Uses of Class vib.FastMatrix (Fiji Javadocs 0-SNAPSHOT API)

Packages that use FastMatrix
Package Description

landmarks

util

vib

vib.app.module

vib.transforms

Packages that use FastMatrix
Package	Description
landmarks
util
vib
vib.app.module
vib.transforms

Uses of FastMatrix in landmarks

Methods in landmarks that return FastMatrix
Modifier and Type	Method and Description
`static FastMatrix`	AffineFromLandmarks.`bestBetweenPoints(NamedPointSet points0, ij.ImagePlus image0, NamedPointSet points1, ij.ImagePlus image1)`
`static FastMatrix`	AffineFromLandmarks.`generateAffine(NamedPointWorld a1, NamedPointWorld b1, NamedPointWorld c1, NamedPointWorld d1, NamedPointWorld a2, NamedPointWorld b2, NamedPointWorld c2, NamedPointWorld d2)`

Methods in landmarks with parameters of type FastMatrix
Modifier and Type	Method and Description
`static double`	AffineFromLandmarks.`evaluateFastMatrix(FastMatrix fm, NamedPointSet from, NamedPointSet to)`
`NamedPointWorld`	NamedPointWorld.`transformWith(FastMatrix m)`

Uses of FastMatrix in util

Methods in util that return FastMatrix
Modifier and Type Method and Description

static FastMatrix CMTKTransformation.parseTypedStreamAffine(File f)

Methods in util that return FastMatrix
Modifier and Type	Method and Description
`static FastMatrix`	CMTKTransformation.`parseTypedStreamAffine(File f)`

Uses of FastMatrix in vib

Fields in vib declared as FastMatrix
Modifier and Type	Field and Description
`FastMatrix`	TransformedImage.`matrix`

Methods in vib that return FastMatrix
Modifier and Type	Method and Description
`static FastMatrix`	FastMatrix.`average(FastMatrix[] array)`
`static FastMatrix`	FastMatrix.`bestLinear(Point3d[] x, Point3d[] y)`
`static FastMatrix`	Center_Transformation.`bestRigid(AmiraTable tModel, AmiraTable tTemplate)`
`static FastMatrix`	FastMatrix.`bestRigid(Point3d[] set1, Point3d[] set2)` Find the best rigid transformation from set1 to set2.
`static FastMatrix`	FastMatrix.`bestRigid(Point3d[] set1, Point3d[] set2, boolean allowScaling)`
`FastMatrix`	FastMatrix.`composeWith(FastMatrix followedBy)`
`FastMatrix`	FastMatrix.`copyFrom(FloatMatrix f)`
`FastMatrix[]`	FastMatrix.`decompose()`
`FastMatrix`	RegistrationOptimizer.`doRegister(double tol)`
`static FastMatrix`	FastMatrix.`fromCalibration(ij.ImagePlus image)`
`static FastMatrix`	RegistrationOptimizer.`getEulerMatrix(double[] x)`
`static FastMatrix`	RegistrationOptimizer.`getEulerMatrix(double a1, double a2, double a3, double tX, double tY, double tZ, double cX, double cY, double cZ)`
`FastMatrix`	FastMatrix.`inverse()`
`static FastMatrix[]`	FastMatrix.`parseMatrices(String m)`
`static FastMatrix`	FastMatrix.`parseMatrix(String m)`
`FastMatrix`	FastMatrix.`plus(FastMatrix other)`
`FastMatrix`	RigidRegistration.`rigidRegistration(TransformedImage trans, String materialBBox, String initial, int mat1, int mat2, boolean noOptimization, int level, int stopLevel, double tolerance, int nInitialPositions, boolean showTransformed, boolean showDifferenceImage, boolean fastButInaccurate, ArrayList<ij.ImagePlus> alsoTransform)`
`static FastMatrix`	FastMatrix.`rotate(double angle, int axis)`
`static FastMatrix`	FastMatrix.`rotateAround(double nx, double ny, double nz, double angle)`
`static FastMatrix`	FastMatrix.`rotateEuler(double a1, double a2, double a3)`
`static FastMatrix`	FastMatrix.`rotateEulerAt(double a1, double a2, double a3, double cx, double cy, double cz)`
`static FastMatrix`	FastMatrix.`rotateFromTo(double aX, double aY, double aZ, double bX, double bY, double bZ)`
`static FastMatrix`	FastMatrix.`rotateToAlignVectors(double[] v2_template, double[] v1_template, double[] v2_domain, double[] v1_domain)`
`FastMatrix`	FastMatrix.`scale(double x, double y, double z)`
`FastMatrix`	FastMatrix.`times(FastMatrix o)`
`static FastMatrix`	FastMatrix.`translate(double x, double y, double z)`
`static FastMatrix`	FastMatrix.`translateToCenter(ij.ImagePlus image)`

Methods in vib with parameters of type FastMatrix
Modifier and Type	Method and Description
`static FastMatrix`	FastMatrix.`average(FastMatrix[] array)`
`abstract double`	RegistrationOptimizer.`calculateBadness(FastMatrix matrix)`
`FastMatrix`	FastMatrix.`composeWith(FastMatrix followedBy)`
`boolean`	FastMatrix.`equals(FastMatrix other)`
`FastMatrix`	FastMatrix.`plus(FastMatrix other)`
`void`	TransformedImage.`setTransformation(FastMatrix matrix)`
`FastMatrix`	FastMatrix.`times(FastMatrix o)`
`static Point3d[]`	ElasticTransformedImage.`transformPoints(Point3d[] origPoints, FastMatrix matrix)`

Constructors in vib with parameters of type FastMatrix
Constructor and Description
`ElasticTransformedImage(InterpolatedImage orig, InterpolatedImage trans, Point3d[] origPoints, FastMatrix initialTransform)`
`FastMatrix(FastMatrix f)`

Uses of FastMatrix in vib.app.module

Methods in vib.app.module with parameters of type FastMatrix
Modifier and Type	Method and Description
`void`	AverageBrain.`doit(ij.ImagePlus image, String[] fileNames, FastMatrix[] matrices)`

Uses of FastMatrix in vib.transforms

Subclasses of FastMatrix in vib.transforms
Modifier and Type Class and Description

class FastMatrixTransform

Methods in vib.transforms with parameters of type FastMatrix
Modifier and Type Method and Description

FastMatrixTransform FastMatrixTransform.composeWithFastMatrix(FastMatrix followedBy)

Constructors in vib.transforms with parameters of type FastMatrix
Constructor and Description

FastMatrixTransform(FastMatrix f)

Uses of Classvib.FastMatrix

Uses of FastMatrix in landmarks

Uses of FastMatrix in util

Uses of FastMatrix in vib

Uses of FastMatrix in vib.app.module

Uses of FastMatrix in vib.transforms

Uses of Class
vib.FastMatrix