| Package | Description |
|---|---|
| sc.fiji.snt |
SNT core classes
|
| sc.fiji.snt.analysis |
Analysis of
Trees. |
| sc.fiji.snt.analysis.graph |
Classes for handling neuronal reconstructions as graphs
|
| sc.fiji.snt.analysis.sholl.parsers |
Parsers to retrieve Profiles from multiple sources (2D/3D images, reconstructions, and tables)
|
| sc.fiji.snt.annotation |
Classes handling neuropil annotations and atlases metadata.
|
| sc.fiji.snt.gui |
Customizations and commands for SNT's GUI.
|
| sc.fiji.snt.gui.cmds |
Scijava-based GUIs for SNT built-in commands.
|
| sc.fiji.snt.io |
Classes for importing reconstructions into SNT.
|
| sc.fiji.snt.plugin |
SNT add-ons as IJ2 commands
|
| sc.fiji.snt.tracing | |
| sc.fiji.snt.tracing.artist | |
| sc.fiji.snt.tracing.image | |
| sc.fiji.snt.util |
Miscellaneous SNT utilities, including classes defining reconstruction nodes.
|
| sc.fiji.snt.viewer |
Visualization of reconstructions
|
| Class and Description |
|---|
| Fill
Defines a filled structure.
|
| Fill.Node
Defines a node in a filled structure.
|
| FillConverter.ResultType |
| FillerProgressCallback |
| FillManagerUI
Implements the Fill Manager dialog.
|
| FillManagerUI.State |
| HessianGenerationCallback |
| NearPoint
This class encapsulates the relationship between an arbitrary point
(nearPoint.x,nearPoint.y,nearPoint.z) close to a particular point on a
particular path.
|
| Path
This class represents a traced segment (i.e., a Path) in a
reconstruction.
|
| PathAndFillManager
The PathAndFillManager is responsible for importing, handling and managing of
Paths and Fills.
|
| PathManagerUI
Implements the Path Manager Dialog.
|
| PathTransformer
Classes transforming
Paths should implement this interface. |
| SciViewSNT
Bridges SNT to
SciView, allowing Trees to be rendered as scenery objects |
| SearchProgressCallback |
| SNT
Implements the SNT plugin.
|
| SNT.CostType |
| SNT.FilterType |
| SNT.HeuristicType |
| SNT.SearchImageType |
| SNT.SearchType |
| SNTPrefs
Class handling SNT preferences.
|
| SNTUI
Implements SNT's main dialog.
|
| TracerCanvas |
| Tree
Utility class to access a Collection of Paths (typically a complete
reconstruction) .
|
| TreeProperties
Allows standardized metadata to be associated to a
Tree. |
| Class and Description |
|---|
| Path
This class represents a traced segment (i.e., a Path) in a
reconstruction.
|
| SNT
Implements the SNT plugin.
|
| Tree
Utility class to access a Collection of Paths (typically a complete
reconstruction) .
|
| Class and Description |
|---|
| Path
This class represents a traced segment (i.e., a Path) in a
reconstruction.
|
| Tree
Utility class to access a Collection of Paths (typically a complete
reconstruction) .
|
| Class and Description |
|---|
| Tree
Utility class to access a Collection of Paths (typically a complete
reconstruction) .
|
| Class and Description |
|---|
| Tree
Utility class to access a Collection of Paths (typically a complete
reconstruction) .
|
| Class and Description |
|---|
| Path
This class represents a traced segment (i.e., a Path) in a
reconstruction.
|
| PathManagerUI
Implements the Path Manager Dialog.
|
| SNT
Implements the SNT plugin.
|
| SNTUI
Implements SNT's main dialog.
|
| Class and Description |
|---|
| SNT
Implements the SNT plugin.
|
| SNTService
Service for accessing and scripting the active instance of
SNT. |
| SNTUI
Implements SNT's main dialog.
|
| Class and Description |
|---|
| Tree
Utility class to access a Collection of Paths (typically a complete
reconstruction) .
|
| Class and Description |
|---|
| Tree
Utility class to access a Collection of Paths (typically a complete
reconstruction) .
|
| Class and Description |
|---|
| Fill
Defines a filled structure.
|
| Path
This class represents a traced segment (i.e., a Path) in a
reconstruction.
|
| SearchProgressCallback |
| SNT
Implements the SNT plugin.
|
| SNT.SearchImageType |
| Class and Description |
|---|
| TracerCanvas |
| Class and Description |
|---|
| SNT.SearchImageType |
| Class and Description |
|---|
| Path
This class represents a traced segment (i.e., a Path) in a
reconstruction.
|
| PathTransformer
Classes transforming
Paths should implement this interface. |
| SNT
Implements the SNT plugin.
|
| Class and Description |
|---|
| SNT
Implements the SNT plugin.
|
| Tree
Utility class to access a Collection of Paths (typically a complete
reconstruction) .
|
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