| Package | Description |
|---|---|
| mpicbg.stitching | |
| plugin |
| Modifier and Type | Method and Description |
|---|---|
ImageCollectionElement |
ImagePlusTimePoint.getElement() |
| Modifier and Type | Method and Description |
|---|---|
protected static Roi |
CollectionStitchingImgLib.getROI(ImageCollectionElement e1,
ImageCollectionElement e2) |
void |
Downsampler.run(ImageCollectionElement element)
Scales the specified
ImageCollectionElement based on the previous
Downsampler.getInput(int, int) call. |
| Modifier and Type | Method and Description |
|---|---|
protected static Vector<ComparePair> |
CollectionStitchingImgLib.findOverlappingTiles(ArrayList<ImageCollectionElement> elements,
StitchingParameters params) |
void |
Downsampler.run(List<ImageCollectionElement> elements)
Scales all provided
ImageCollectionElements based on the previous
Downsampler.getInput(int, int) call. |
static ArrayList<ImagePlusTimePoint> |
CollectionStitchingImgLib.stitchCollection(ArrayList<ImageCollectionElement> elements,
StitchingParameters params) |
| Constructor and Description |
|---|
ImagePlusTimePoint(ij.ImagePlus imp,
int impId,
int timepoint,
Model model,
ImageCollectionElement element) |
| Modifier and Type | Method and Description |
|---|---|
protected ArrayList<ImageCollectionElement> |
Stitching_Grid.getAllFilesInDirectory(String directory,
boolean confirmFiles) |
protected ArrayList<ImageCollectionElement> |
Stitching_Grid.getGridLayout(GridType grid,
int gridSizeX,
int gridSizeY,
double overlapX,
double overlapY,
String directory,
String filenames,
int startI,
int startX,
int startY,
boolean virtual,
Downsampler ds) |
protected ArrayList<ImageCollectionElement> |
Stitching_Grid.getLayoutFromFile(String directory,
String layoutFile,
Downsampler ds) |
protected ArrayList<ImageCollectionElement> |
Stitching_Grid.getLayoutFromMultiSeriesFile(String multiSeriesFile,
double increaseOverlap,
boolean ignoreCalibration,
boolean invertX,
boolean invertY,
boolean ignoreZStage,
Downsampler ds) |
| Modifier and Type | Method and Description |
|---|---|
protected void |
Stitching_Grid.writeRegisteredTileConfiguration(File file,
ArrayList<ImageCollectionElement> elements) |
protected void |
Stitching_Grid.writeTileConfiguration(File file,
ArrayList<ImageCollectionElement> elements) |
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