| Modifier and Type | Method and Description |
|---|---|
protected BasicViewDescription<BasicViewSetup> |
SequenceDescriptionMinimal.createViewDescription(int timepointId,
int setupId) |
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractSequenceDescription<V extends BasicViewSetup,D extends BasicViewDescription<V>,L extends BasicImgLoader>
A SPIM sequence consisting of a list of timepoints and a list of view setups.
|
| Modifier and Type | Method and Description |
|---|---|
static <V extends BasicViewSetup,D extends BasicViewDescription<V>> |
BasicViewDescription.markMissingViews(Map<ViewId,D> viewDescriptions,
MissingViews missingViews) |
| Modifier and Type | Class and Description |
|---|---|
class |
ViewDescription |
| Modifier and Type | Class and Description |
|---|---|
class |
GenericLoadParseQueryXML<AS extends AbstractSpimData<S>,S extends AbstractSequenceDescription<V,D,L>,V extends BasicViewSetup,D extends BasicViewDescription<V>,L extends BasicImgLoader,X extends XmlIoAbstractSpimData<S,AS>>
Interface for interactive parsing of spimdata XMLs
|
| Modifier and Type | Field and Description |
|---|---|
protected BasicViewDescription<? extends BasicViewSetup> |
ViewSetupExplorerPanel.firstSelectedVD |
| Modifier and Type | Field and Description |
|---|---|
protected ArrayList<BasicViewDescription<? extends BasicViewSetup>> |
ViewSetupTableModel.elements |
protected HashSet<BasicViewDescription<? extends BasicViewSetup>> |
ViewSetupExplorerPanel.selectedRows |
| Modifier and Type | Method and Description |
|---|---|
BasicViewDescription<? extends BasicViewSetup> |
ViewSetupExplorerPanel.firstSelectedVD() |
| Modifier and Type | Method and Description |
|---|---|
protected ArrayList<BasicViewDescription<? extends BasicViewSetup>> |
ViewSetupTableModel.elements() |
ArrayList<BasicViewDescription<? extends BasicViewSetup>> |
ViewSetupTableModel.getElements() |
HashSet<BasicViewDescription<? extends BasicViewSetup>> |
ViewSetupExplorerPanel.getSelectedRows() |
List<BasicViewDescription<? extends BasicViewSetup>> |
ViewSetupExplorerPanel.selectedRows() |
| Modifier and Type | Method and Description |
|---|---|
void |
SelectedViewDescriptionListener.seletedViewDescription(BasicViewDescription<? extends BasicViewSetup> viewDescription) |
static void |
ViewSetupExplorerPanel.updateBDV(BigDataViewer bdv,
boolean colorMode,
AbstractSpimData<?> data,
BasicViewDescription<? extends BasicViewSetup> firstVD,
Collection<? extends BasicViewDescription<? extends BasicViewSetup>> selectedRows) |
| Modifier and Type | Method and Description |
|---|---|
static void |
ViewSetupExplorerPanel.updateBDV(BigDataViewer bdv,
boolean colorMode,
AbstractSpimData<?> data,
BasicViewDescription<? extends BasicViewSetup> firstVD,
Collection<? extends BasicViewDescription<? extends BasicViewSetup>> selectedRows) |
| Modifier and Type | Method and Description |
|---|---|
protected BasicViewDescription<?> |
InterestPointTableModel.getCurrentViewDescription() |
| Modifier and Type | Method and Description |
|---|---|
static String |
InterestPointTableModel.label(ViewInterestPoints viewInterestPoints,
BasicViewDescription<?> vd,
int row) |
void |
InterestPointExplorer.seletedViewDescription(BasicViewDescription<? extends BasicViewSetup> viewDescription) |
protected void |
InterestPointTableModel.updateViewDescription(BasicViewDescription<?> vd,
boolean isFirst) |
void |
InterestPointExplorerPanel.updateViewDescription(BasicViewDescription<?> vd,
boolean isFirst) |
| Modifier and Type | Method and Description |
|---|---|
protected BasicViewDescription<?> |
RegistrationTableModel.getCurrentViewDescription() |
| Modifier and Type | Method and Description |
|---|---|
void |
RegistrationExplorer.seletedViewDescription(BasicViewDescription<? extends BasicViewSetup> viewDescription) |
protected void |
RegistrationTableModel.updateViewDescription(BasicViewDescription<?> vd) |
void |
RegistrationExplorerPanel.updateViewDescription(BasicViewDescription<?> vd) |
| Modifier and Type | Method and Description |
|---|---|
protected static Angle |
LegacySlideBook6ImgLoader.getAngle(BasicViewDescription<?> vd) |
protected static Angle |
LegacyLightSheetZ1ImgLoader.getAngle(BasicViewDescription<?> vd) |
protected static Channel |
LegacySlideBook6ImgLoader.getChannel(BasicViewDescription<?> vd) |
protected static Channel |
LegacyLightSheetZ1ImgLoader.getChannel(BasicViewDescription<?> vd) |
protected static Illumination |
LegacySlideBook6ImgLoader.getIllumination(BasicViewDescription<?> vd) |
protected static Illumination |
LegacyLightSheetZ1ImgLoader.getIllumination(BasicViewDescription<?> vd) |
static <T extends RealType<T> & NativeType<T>> |
LegacyMicroManagerImgLoader.populateImage(ArrayImg<T,?> img,
BasicViewDescription<?> vd,
MultipageTiffReader r) |
| Constructor and Description |
|---|
DHMImgLoader(File directory,
String stackDir,
String amplitudeDir,
String phaseDir,
List<String> timepoints,
List<String> zPlanes,
String extension,
int ampChannelId,
int phaseChannelId,
AbstractSequenceDescription<? extends BasicViewSetup,? extends BasicViewDescription<?>,?> sd) |
LegacyDHMImgLoader(File directory,
String stackDir,
String amplitudeDir,
String phaseDir,
List<String> timepoints,
List<String> zPlanes,
String extension,
int ampChannelId,
int phaseChannelId,
AbstractSequenceDescription<? extends BasicViewSetup,? extends BasicViewDescription<?>,?> sd) |
LegacyMicroManagerImgLoader(File mmFile,
AbstractSequenceDescription<? extends BasicViewSetup,? extends BasicViewDescription<?>,?> sequenceDescription) |
MicroManagerImgLoader(File mmFile,
AbstractSequenceDescription<? extends BasicViewSetup,? extends BasicViewDescription<?>,?> sequenceDescription) |
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