| Constructor and Description |
|---|
CanvasImage(Image<T> input,
int[] newSize,
int[] offset,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory)
Increase or decrease size of the image in all dimensions
|
CanvasImage(Image<T> input,
int[] newSize,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory) |
ROIAlgorithm(S type,
Image<T> imageIn,
int[] patchSize,
OutOfBoundsStrategyFactory<T> inOutFactory) |
| Modifier and Type | Field and Description |
|---|---|
protected OutOfBoundsStrategyFactory<T> |
AbstractRegionalExtremaFinder.outOfBoundsFactory |
| Modifier and Type | Method and Description |
|---|---|
void |
RegionalExtremaFinder.setOutOfBoundsStrategyFactory(OutOfBoundsStrategyFactory<T> strategy)
Set the strategy used by this extrema finder to deal with edge pixels.
|
void |
AbstractRegionalExtremaFinder.setOutOfBoundsStrategyFactory(OutOfBoundsStrategyFactory<T> strategy) |
| Modifier and Type | Method and Description |
|---|---|
OutOfBoundsStrategyFactory<T> |
FourierTransform.getCustomOutOfBoundsStrategy() |
OutOfBoundsStrategyFactory<T> |
FourierConvolution.getImageOutOfBoundsStrategy() |
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>,S extends ComplexType<S>> |
FFTFunctions.computeFFT(Image<T> img,
S complexType,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory,
int[] imageOffset,
int[] imageSize,
int numThreads,
boolean scale) |
void |
FourierTransform.setCustomOutOfBoundsStrategy(OutOfBoundsStrategyFactory<T> strategy) |
void |
FourierConvolution.setImageOutOfBoundsStrategy(OutOfBoundsStrategyFactory<T> strategy) |
| Constructor and Description |
|---|
FourierTransform(Image<T> image,
S complexType,
OutOfBoundsStrategyFactory<T> strategy) |
| Modifier and Type | Method and Description |
|---|---|
protected static <T extends NumericType<T>> |
GaussianConvolution.computeGaussFloatArray3D(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory,
double[][] kernel,
int numThreads)
This class does the gaussian filtering of an image.
|
| Constructor and Description |
|---|
GaussianConvolution(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory,
double sigma) |
GaussianConvolution(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory,
double[] sigma) |
GaussianConvolution2(Image<A> image,
ImageFactory<B> factoryProcess,
OutOfBoundsStrategyFactory<B> outOfBoundsFactory,
Converter<A,B> converterIn,
double sigma) |
GaussianConvolution2(Image<A> image,
ImageFactory<B> factoryProcess,
OutOfBoundsStrategyFactory<B> outOfBoundsFactory,
Converter<A,B> converterIn,
double[] sigma) |
GaussianConvolution3(Image<A> image,
ImageFactory<B> factoryProcess,
ImageFactory<C> factoryOut,
OutOfBoundsStrategyFactory<B> outOfBoundsFactory,
Converter<A,B> converterIn,
Converter<B,C> converterOut,
double sigma) |
GaussianConvolution3(Image<A> image,
ImageFactory<B> factoryProcess,
ImageFactory<C> factoryOut,
OutOfBoundsStrategyFactory<B> outOfBoundsFactory,
Converter<A,B> converterIn,
Converter<B,C> converterOut,
double[] sigma) |
GaussianConvolution4(Image<A> image,
ImageFactory<B> factoryProcess,
ImageFactory<C> factoryOut,
OutOfBoundsStrategyFactory<B> outOfBoundsFactory,
Converter<A,B> converterIn,
Converter<B,C> converterOut,
B sigma) |
GaussianConvolution4(Image<A> image,
ImageFactory<B> factoryProcess,
ImageFactory<C> factoryOut,
OutOfBoundsStrategyFactory<B> outOfBoundsFactory,
Converter<A,B> converterIn,
Converter<B,C> converterOut,
B[] sigma) |
GaussianConvolutionReal(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory,
double sigma) |
GaussianConvolutionReal(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory,
double[] sigma) |
| Modifier and Type | Field and Description |
|---|---|
protected OutOfBoundsStrategyFactory<B> |
DifferenceOfGaussian.outOfBoundsFactory |
| Constructor and Description |
|---|
DifferenceOfGaussian(Image<A> img,
ImageFactory<B> factory,
Converter<A,B> converter,
OutOfBoundsStrategyFactory<B> outOfBoundsFactory,
double[] sigma1,
double[] sigma2,
B minPeakValue,
B normalizationFactor)
Extracts local minima and maxima of a certain size.
|
DifferenceOfGaussian(Image<A> img,
ImageFactory<B> factory,
Converter<A,B> converter,
OutOfBoundsStrategyFactory<B> outOfBoundsFactory,
double sigma1,
double sigma2,
B minPeakValue,
B normalizationFactor)
Calls the DifferenceOfGaussian constructor with the given sigmas copied into double[] arrays,
one entry per dimension.
|
DifferenceOfGaussianReal(Image<A> img,
ImageFactory<B> factory,
OutOfBoundsStrategyFactory<B> outOfBoundsFactory,
double[] sigma1,
double[] sigma2,
double minPeakValue,
double normalizationFactor) |
DifferenceOfGaussianReal(Image<A> img,
ImageFactory<B> factory,
OutOfBoundsStrategyFactory<B> outOfBoundsFactory,
double sigma1,
double sigma2,
double minPeakValue,
double normalizationFactor) |
DifferenceOfGaussianReal1(Image<A> img,
OutOfBoundsStrategyFactory<A> outOfBoundsFactory,
double[] sigma1,
double[] sigma2,
double minPeakValue,
double normalizationFactor) |
DifferenceOfGaussianReal1(Image<A> img,
OutOfBoundsStrategyFactory<A> outOfBoundsFactory,
double sigma1,
double sigma2,
double minPeakValue,
double normalizationFactor) |
| Modifier and Type | Method and Description |
|---|---|
LocalizableByDimCursor<T> |
Container.createLocalizableByDimCursor(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory) |
| Modifier and Type | Method and Description |
|---|---|
Array3DLocalizableByDimOutOfBoundsCursor<T> |
Array3D.createLocalizableByDimCursor(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory) |
ArrayLocalizableByDimOutOfBoundsCursor<T> |
Array.createLocalizableByDimCursor(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory) |
| Modifier and Type | Method and Description |
|---|---|
CellLocalizableByDimCursor<T> |
CellContainer.createLocalizableByDimCursor(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory) |
| Modifier and Type | Method and Description |
|---|---|
LocalizableByDimCursor<T> |
ConstantContainer.createLocalizableByDimCursor(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory) |
| Modifier and Type | Method and Description |
|---|---|
LocalizableByDimCursor<T> |
DynamicContainer.createLocalizableByDimCursor(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory) |
| Modifier and Type | Method and Description |
|---|---|
ImagePlusLocalizableByDimOutOfBoundsCursor<T> |
ImagePlusContainer.createLocalizableByDimCursor(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory) |
| Modifier and Type | Method and Description |
|---|---|
PlanarLocalizableByDimOutOfBoundsCursor<T> |
PlanarContainer.createLocalizableByDimCursor(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory) |
| Modifier and Type | Method and Description |
|---|---|
ShapeListLocalizableByDimOutOfBoundsCursor<T> |
ShapeListCached.createLocalizableByDimCursor(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory) |
ShapeListLocalizableByDimOutOfBoundsCursor<T> |
ShapeList.createLocalizableByDimCursor(Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory) |
| Constructor and Description |
|---|
Array3DLocalizableByDimOutOfBoundsCursor(Array3D<T,?> container,
Image<T> image,
T type,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
ArrayLocalizableByDimOutOfBoundsCursor(Array<T,?> container,
Image<T> image,
T type,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
| Constructor and Description |
|---|
CellLocalizableByDimOutOfBoundsCursor(CellContainer<T,?> container,
Image<T> image,
T type,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
| Constructor and Description |
|---|
ConstantLocalizableByDimOutOfBoundsCursor(ConstantContainer<T> container,
Image<T> image,
T type,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
| Constructor and Description |
|---|
DynamicLocalizableByDimOutOfBoundsCursor(DynamicContainer<T,?> container,
Image<T> image,
T type,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
| Constructor and Description |
|---|
ImagePlusLocalizableByDimOutOfBoundsCursor(ImagePlusContainer<T,?> container,
Image<T> image,
T type,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
| Constructor and Description |
|---|
PlanarLocalizableByDimOutOfBoundsCursor(PlanarContainer<T,?> container,
Image<T> image,
T type,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
| Constructor and Description |
|---|
ShapeListCachedLocalizableByDimOutOfBoundsCursor(ShapeList<T> container,
Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory,
ShapeListCache<T> cache) |
ShapeListLocalizableByDimOutOfBoundsCursor(ShapeList<T> container,
Image<T> image,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
| Constructor and Description |
|---|
DiscCursor(Image<T> img,
float[] center,
float radius,
float[] calibration,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory)
Construct a
DiscCursor on an image with a given spatial calibration. |
DiscCursor(Image<T> img,
Localizable centerCursor,
float radius,
float[] calibration,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory)
Construct a
DiscCursor on an image with a given spatial calibration
and a given OutOfBoundsStrategyFactory to handle off-bounds locations. |
HyperSphereIterator(Image<T> image,
Localizable center,
int radius,
OutOfBoundsStrategyFactory<T> oobFactory) |
SphereCursor(Image<T> img,
float[] center,
float radius,
float[] calibration,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory)
Construct a
SphereCursor on a 3D image with a given spatial calibration. |
SphereCursor(Image<T> img,
Localizable centerCursor,
float radius,
float[] calibration,
OutOfBoundsStrategyFactory<T> outOfBoundsFactory)
Construct a
SphereCursor on a 3D image with a given spatial calibration
and a given OutOfBoundsStrategyFactory to handle off-bounds locations. |
| Modifier and Type | Method and Description |
|---|---|
LocalizableByDimCursor<T> |
Image.createLocalizableByDimCursor(OutOfBoundsStrategyFactory<T> factory)
Creates a
LocalizableByDimCursor which is able to move freely within and out of Image bounds. |
| Modifier and Type | Field and Description |
|---|---|
protected OutOfBoundsStrategyFactory<T> |
InterpolatorImpl.outOfBoundsStrategyFactory |
protected OutOfBoundsStrategyFactory<T> |
InterpolatorFactory.outOfBoundsStrategyFactory |
| Modifier and Type | Method and Description |
|---|---|
OutOfBoundsStrategyFactory<T> |
InterpolatorImpl.getOutOfBoundsStrategyFactory()
Returns the
OutOfBoundsStrategyFactory used for interpolation |
OutOfBoundsStrategyFactory<T> |
InterpolatorFactory.getOutOfBoundsStrategyFactory() |
OutOfBoundsStrategyFactory<T> |
Interpolator.getOutOfBoundsStrategyFactory()
Returns the
OutOfBoundsStrategyFactory used for interpolation |
| Modifier and Type | Method and Description |
|---|---|
void |
InterpolatorFactory.setOutOfBoundsStrategyFactory(OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
| Constructor and Description |
|---|
InterpolatorFactory(OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
InterpolatorImpl(Image<T> img,
InterpolatorFactory<T> interpolatorFactory,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
| Constructor and Description |
|---|
DCTInterpolator(Image<T> img,
InterpolatorFactory<T> interpolatorFactory,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
DCTInterpolatorFactory(OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
| Constructor and Description |
|---|
LanczosInterpolator(Image<T> img,
InterpolatorFactory<T> interpolatorFactory,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory,
int alpha,
boolean clipping) |
LanczosInterpolatorFactory(OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory)
Creates a new
LanczosInterpolatorFactory with standard parameters (do clipping, alpha=5) |
LanczosInterpolatorFactory(OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory,
int alpha,
boolean clipping)
Creates a new
LanczosInterpolatorFactory using the Lanczos (sinc) interpolation in a certain window |
| Constructor and Description |
|---|
NearestNeighborInterpolator(Image<T> img,
InterpolatorFactory<T> interpolatorFactory,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
NearestNeighborInterpolator1D(Image<T> img,
InterpolatorFactory<T> interpolatorFactory,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
NearestNeighborInterpolator2D(Image<T> img,
InterpolatorFactory<T> interpolatorFactory,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
NearestNeighborInterpolator3D(Image<T> img,
InterpolatorFactory<T> interpolatorFactory,
OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
NearestNeighborInterpolatorFactory(OutOfBoundsStrategyFactory<T> outOfBoundsStrategyFactory) |
| Modifier and Type | Class and Description |
|---|---|
class |
OutOfBoundsStrategyMirrorExpWindowingFactory<T extends RealType<T>>
TODO
|
class |
OutOfBoundsStrategyMirrorFactory<T extends Type<T>>
TODO
|
class |
OutOfBoundsStrategyPeriodicFactory<T extends Type<T>>
TODO
|
class |
OutOfBoundsStrategyValueFactory<T extends Type<T>>
TODO
|
| Modifier and Type | Method and Description |
|---|---|
abstract LocalizableByDimCursor<FloatType> |
IsolatedPixelWeightener.getResultIterator(OutOfBoundsStrategyFactory<FloatType> factory) |
LocalizableByDimCursor<FloatType> |
GaussContent.getResultIterator(OutOfBoundsStrategyFactory<FloatType> factory) |
LocalizableByDimCursor<FloatType> |
EntropyFast.getResultIterator(OutOfBoundsStrategyFactory<FloatType> factory) |
LocalizableByDimCursor<FloatType> |
AverageContent.getResultIterator(OutOfBoundsStrategyFactory<FloatType> factory) |
| Modifier and Type | Field and Description |
|---|---|
OutOfBoundsStrategyFactory<FloatType> |
SPIMConfiguration.strategyFactoryGauss |
OutOfBoundsStrategyFactory<FloatType> |
SPIMConfiguration.strategyFactoryOutput |
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>> |
DetectionSegmentation.extractBeadsLaPlaceImgLib(Image<T> img,
OutOfBoundsStrategyFactory<T> oobsFactory,
float imageSigma,
float sigma1,
float sigma2,
float minPeakValue,
float minInitialPeakValue,
boolean findMax,
boolean findMin,
int debugLevel) |
static <T extends RealType<T>> |
DetectionSegmentation.extractBeadsLaPlaceImgLib(Image<T> img,
OutOfBoundsStrategyFactory<T> oobsFactory,
float imageSigma,
float initialSigma,
float minPeakValue,
float minInitialPeakValue,
int stepsPerOctave,
boolean findMax,
boolean findMin,
int debugLevel) |
| Modifier and Type | Method and Description |
|---|---|
static ArrayList<DifferenceOfGaussianPeak<FloatType>> |
DetectionSegmentation.extractBeadsLaPlaceImgLib(Image<FloatType> img,
OutOfBoundsStrategyFactory<FloatType> oobsFactory,
float imageSigma,
float sigma1,
float sigma2,
float minPeakValue,
float minInitialPeakValue,
boolean findMax,
boolean findMin,
int localization,
int iterations,
double[] sigma,
int[] region,
int debugLevel) |
| Constructor and Description |
|---|
Affine2D(Object fn,
float scaleX,
float shearX,
float shearY,
float scaleY,
float translateX,
float translateY,
AbstractAffine3D.Mode mode,
OutOfBoundsStrategyFactory<N> oobf) |
Affine3D(Object fn,
float[] matrix,
AbstractAffine3D.Mode mode,
OutOfBoundsStrategyFactory<T> oobf) |
Affine3D(Object fn,
float scaleX,
float shearX,
float shearY,
float scaleY,
float translateX,
float translateY,
AbstractAffine3D.Mode mode,
OutOfBoundsStrategyFactory<T> oobf) |
Gauss(IFunction fn,
OutOfBoundsStrategyFactory<T> oobs,
double sigma) |
Gauss(IFunction fn,
OutOfBoundsStrategyFactory<T> oobs,
double[] sigma) |
Gauss(Image<T> img,
OutOfBoundsStrategyFactory<T> oobs,
double sigma) |
Gauss(Image<T> img,
OutOfBoundsStrategyFactory<T> oobs,
double[] sigma) |
MedianFilter(IFunction fn,
float radius,
OutOfBoundsStrategyFactory<T> oobs) |
MedianFilter(Image<T> img,
float radius,
OutOfBoundsStrategyFactory<T> oobs) |
| Constructor and Description |
|---|
AbstractAffine3D(Image<T> img,
float[] matrix,
AbstractAffine3D.Mode mode,
OutOfBoundsStrategyFactory<T> oobf) |
AbstractAffine3D(Image<T> img,
float scaleX,
float shearX,
float shearY,
float scaleY,
float translateX,
float translateY,
AbstractAffine3D.Mode mode,
OutOfBoundsStrategyFactory<T> oobf) |
| Constructor and Description |
|---|
DifferenceOfGaussianNewPeakFinder(Image<FloatType> img,
OutOfBoundsStrategyFactory<FloatType> outOfBoundsFactory,
double[] sigma1,
double[] sigma2,
double minPeakValue,
double normalizationFactor) |
Copyright © 2015–2021 Fiji. All rights reserved.