| Modifier and Type | Class and Description |
|---|---|
static class |
Logger.SlaveLogger
A logger that wraps a master logger and uses it to echo any received
message.
|
static class |
Logger.StringBuilderLogger
This
Logger outputs to a StringBuilder given at construction. |
| Modifier and Type | Field and Description |
|---|---|
static Logger |
Logger.DEFAULT_LOGGER
This
Logger simply outputs to the standard output and standard
error. |
static Logger |
Logger.IJ_LOGGER
This
Logger outputs to the ImageJ log window, and to the ImageJ
toolbar to report progress. |
static Logger |
Logger.IJTOOLBAR_LOGGER
This
Logger outputs everything to the ImageJ toolbar. |
static Logger |
Logger.VOID_LOGGER
This logger discard any message.
|
| Modifier and Type | Method and Description |
|---|---|
Logger |
Model.getLogger()
Return the logger currently set for this model.
|
| Modifier and Type | Method and Description |
|---|---|
void |
Model.setLogger(Logger logger)
Set the logger that will receive the messages from the processes
occurring within this trackmate.
|
| Constructor and Description |
|---|
SlaveLogger(Logger master,
double progressStart,
double progressRange)
Create a new slave logger that will report progress to its master in
the following way: If a sub-process reports a progress of
val, then the master logger will receive the progress
value progressStart + progressRange * val. |
| Modifier and Type | Field and Description |
|---|---|
protected Logger |
AbstractTMAction.logger |
| Modifier and Type | Method and Description |
|---|---|
static ij.ImagePlus |
CaptureOverlayAction.capture(ij.ImagePlus imp,
int first,
int last,
Logger log)
Generates a new ImagePlus of type RGB, 2D over time, made by capturing
each time frame of the specified ImagePlus.
|
static ij.ImagePlus |
LabelImgExporter.createLabelImagePlus(Model model,
ij.ImagePlus imp,
boolean exportSpotsAsDots,
boolean exportTracksOnly,
Logger logger)
Creates a new label
ImagePlus where the spots of the specified
model are painted as ellipsoids taken from their shape, with their track
ID as pixel value. |
static ij.ImagePlus |
LabelImgExporter.createLabelImagePlus(Model model,
int[] dimensions,
double[] calibration,
boolean exportSpotsAsDots,
boolean exportTracksOnly,
Logger logger)
Creates a new label
ImagePlus where the spots of the specified
model are painted as ellipsoids taken from their shape, with their track
ID as pixel value. |
static ij.ImagePlus |
LabelImgExporter.createLabelImagePlus(TrackMate trackmate,
boolean exportSpotsAsDots,
boolean exportTracksOnly,
Logger logger)
Creates a new label
ImagePlus where the spots of the specified
model are painted as ellipsoids taken from their shape, with their track
ID as pixel value. |
static Img<UnsignedShortType> |
LabelImgExporter.createLabelImg(Model model,
long[] dimensions,
double[] calibration,
boolean exportSpotsAsDots,
boolean exportTracksOnly,
Logger logger)
Creates a new label
Img of UnsignedShortType where the
spots of the specified model are painted as ellipsoids taken from their
shape, with their track ID as pixel value. |
static void |
ISBIChallengeExporter.exportToFile(Model model,
Settings settings,
File file,
Logger logger) |
static void |
RecomputeFeatureAction.recompute(TrackMate trackmate,
Logger logger) |
void |
TrackMateAction.setLogger(Logger logger)
Sets the logger that will receive logs when this action is executed.
|
void |
AbstractTMAction.setLogger(Logger logger) |
static ij.ImagePlus |
ExtractTrackStackAction.trackStack(Settings settings,
List<Spot> path,
double radius,
boolean do3d,
Logger logger) |
static ij.ImagePlus |
ExtractTrackStackAction.trackStack(TrackMate trackmate,
Spot spot,
boolean do3d,
Logger logger) |
static ij.ImagePlus |
ExtractTrackStackAction.trackStack(TrackMate trackmate,
Spot start,
Spot end,
boolean do3d,
Logger logger) |
| Constructor and Description |
|---|
SpotGaussianFitter(Model model,
Settings settings,
Logger logger,
boolean fixRadius) |
| Modifier and Type | Method and Description |
|---|---|
static void |
DetectionUtils.preview(Model model,
Settings settings,
SpotDetectorFactoryBase<?> detectorFactory,
Map<String,Object> detectorSettings,
int frame,
Logger logger,
Consumer<Boolean> buttonEnabler)
Preview a detection results.
|
| Modifier and Type | Field and Description |
|---|---|
protected Logger |
AbstractSemiAutoTracker.logger |
| Constructor and Description |
|---|
AbstractSemiAutoTracker(Model model,
SelectionModel selectionModel,
Logger logger) |
SemiAutoTracker(Model model,
SelectionModel selectionModel,
ij.ImagePlus imp,
Logger logger) |
| Modifier and Type | Method and Description |
|---|---|
Logger |
LogPanel.getLogger() |
Logger |
FilterGuiPanel.getLogger() |
| Constructor and Description |
|---|
SpotDetectorDescriptor(Settings settings,
ConfigurationPanel configurationPanel,
Logger logger) |
SpotTrackerDescriptor(Settings settings,
ConfigurationPanel configurationPanel,
Logger logger) |
StartDialogDescriptor(Settings settings,
Logger logger) |
| Modifier and Type | Field and Description |
|---|---|
protected Logger |
TmXmlWriter.logger |
| Modifier and Type | Method and Description |
|---|---|
static File |
IOUtils.askForFileForLoading(File file,
String title,
Frame parent,
Logger logger)
Prompts the user for a xml file to load from.
|
static File |
IOUtils.askForFileForSaving(File file,
Frame parent,
Logger logger)
Prompts the user for a xml file to save to.
|
static File |
IOUtils.askForFolder(File file,
String title,
Frame parent,
Logger logger)
Prompts the user for a target folder.
|
static boolean |
IOUtils.readBooleanAttribute(org.jdom2.Element element,
String name,
Logger logger) |
static boolean |
IOUtils.readBooleanAttribute(org.jdom2.Element element,
String name,
Logger logger,
boolean defaultValue) |
static double |
IOUtils.readDoubleAttribute(org.jdom2.Element element,
String name,
Logger logger) |
static double |
IOUtils.readDoubleAttribute(org.jdom2.Element element,
String name,
Logger logger,
double defaultValue) |
static double |
IOUtils.readFloatAttribute(org.jdom2.Element element,
String name,
Logger logger) |
static int |
IOUtils.readIntAttribute(org.jdom2.Element element,
String name,
Logger logger)
Read and return an integer attribute from a JDom
Element, and
substitute a default value of 0 if the attribute is not found or of the
wrong type. |
static int |
IOUtils.readIntAttribute(org.jdom2.Element element,
String name,
Logger logger,
int defaultValue) |
| Constructor and Description |
|---|
TGMMImporter(File file,
List<AffineTransform3D> transforms,
Logger logger) |
TGMMImporter(File file,
List<AffineTransform3D> transforms,
Pattern framePattern,
Logger logger) |
TmXmlWriter(File file,
Logger logger)
Creates a new XML file writer for TrackMate.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SpotTracker.setLogger(Logger logger)
Sets the
Logger instance that will receive messages from this
SpotTracker. |
| Modifier and Type | Method and Description |
|---|---|
void |
KalmanTracker.setLogger(Logger logger) |
| Modifier and Type | Field and Description |
|---|---|
protected Logger |
NearestNeighborTracker.logger |
| Modifier and Type | Method and Description |
|---|---|
void |
NearestNeighborTracker.setLogger(Logger logger) |
| Modifier and Type | Method and Description |
|---|---|
void |
OverlapTracker.setLogger(Logger logger) |
| Modifier and Type | Field and Description |
|---|---|
protected Logger |
SparseLAPFrameToFrameTracker.logger |
| Modifier and Type | Method and Description |
|---|---|
void |
SparseLAPTracker.setLogger(Logger logger) |
void |
SparseLAPSegmentTracker.setLogger(Logger logger) |
void |
SparseLAPFrameToFrameTracker.setLogger(Logger logger) |
| Constructor and Description |
|---|
JaqamanLinker(CostMatrixCreator<K,J> costMatrixCreator,
Logger logger)
Creates a new linker for the specified cost matrix creator.
|
| Modifier and Type | Class and Description |
|---|---|
class |
LogRecorder |
| Modifier and Type | Method and Description |
|---|---|
Logger |
JLabelLogger.getLogger() |
| Modifier and Type | Method and Description |
|---|---|
static File |
TMUtils.proposeTrackMateSaveFile(Settings settings,
Logger logger)
Creates a default file path to save the TrackMate session to, based on
the image TrackMate works on.
|
| Constructor and Description |
|---|
LogRecorder(Logger source) |
| Modifier and Type | Method and Description |
|---|---|
Logger |
SpotEditToolConfigPanel.getLogger()
Returns the
Logger that outputs on this config panel. |
| Modifier and Type | Field and Description |
|---|---|
protected Logger |
TrackSchemeFrame.logger |
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