| Package | Description |
|---|---|
| bunwarpj |
Provides the main and utility classes to run the ImageJ/Fiji plugin
bUnwarpJ_: consistent and elastic image registration. |
| Modifier and Type | Method and Description |
|---|---|
PointHandler |
MainDialog.getSourcePh()
Get source point handler.
|
PointHandler |
MainDialog.getTargetPh()
Get target point handler.
|
| Modifier and Type | Method and Description |
|---|---|
void |
MainDialog.grayImage(PointHandler ph)
Method to color the area of the mask.
|
void |
PointHandler.setSecondaryPointHandler(ij.ImagePlus secondaryImp,
PointHandler secondaryPh)
Set the secondary point handler.
|
void |
PointAction.setSecondaryPointHandler(ij.ImagePlus secondaryImp,
PointHandler secondaryPh)
Set the secondary point handler.
|
void |
PointToolbar.setSource(ij.ImagePlus sourceImp,
PointHandler sourcePh)
Set the source image.
|
void |
PointToolbar.setTarget(ij.ImagePlus targetImp,
PointHandler targetPh)
Set the target image.
|
void |
FinalAction.setup(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel source,
BSplineModel target,
PointHandler sourcePh,
PointHandler targetPh,
Mask sourceMsk,
Mask targetMsk,
double[][] sourceAffineMatrix,
double[][] targetAffineMatrix,
int min_scale_deformation,
int max_scale_deformation,
int min_scale_image,
double divWeight,
double curlWeight,
double landmarkWeight,
double imageWeight,
double consistencyWeight,
double stopThreshold,
int outputLevel,
boolean showMarquardtOptim,
int accurate_mode)
Pass parameter from
MainDialog to
FinalAction. |
| Constructor and Description |
|---|
IODialog(Frame parentWindow,
ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
PointHandler sourcePh,
PointHandler targetPh,
MainDialog dialog)
Create a new instance of IODialog.
|
PointAction(ij.ImagePlus imp,
PointHandler ph,
PointToolbar tb,
MainDialog dialog)
Create an instance of PointAction.
|
Transformation(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel source,
BSplineModel target,
PointHandler sourcePh,
PointHandler targetPh,
Mask sourceMsk,
Mask targetMsk,
double[][] sourceAffineMatrix,
double[][] targetAffineMatrix,
int min_scale_deformation,
int max_scale_deformation,
int min_scale_image,
double divWeight,
double curlWeight,
double landmarkWeight,
double imageWeight,
double consistencyWeight,
double stopThreshold,
int outputLevel,
boolean showMarquardtOptim,
int accurate_mode,
String fn_tnf_1,
String fn_tnf_2,
ij.ImagePlus output_ip_1,
ij.ImagePlus output_ip_2,
MainDialog dialog)
Create an instance of Transformation.
|
Transformation(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel source,
BSplineModel target,
PointHandler sourcePh,
PointHandler targetPh,
Mask sourceMsk,
Mask targetMsk,
double[][] sourceAffineMatrix,
double[][] targetAffineMatrix,
int min_scale_deformation,
int max_scale_deformation,
int min_scale_image,
double divWeight,
double curlWeight,
double landmarkWeight,
double imageWeight,
double consistencyWeight,
double stopThreshold,
int outputLevel,
boolean showMarquardtOptim,
int accurate_mode,
String fn_tnf_1,
String fn_tnf_2,
ij.ImagePlus output_ip_1,
ij.ImagePlus output_ip_2,
MainDialog dialog,
ij.process.ImageProcessor originalSourceIP,
ij.process.ImageProcessor originalTargetIP)
Create an instance of Transformation.
|
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