| Class | Description |
|---|---|
| AnalyseSkeletonWrapper |
A wrapper plugin to bundle AnalyzeSkeleton into BoneJ2
|
| AnisotropyWrapper<T extends RealType<T> & NativeType<T>> |
A command that analyses the degree of anisotropy in an image.
|
| BoneJCommand | |
| BoneJMain |
A main class for quickly testing the wrapper plugins
|
| CommonMessages |
Common messages displayed for the user
|
| ConnectivityWrapper<T extends RealType<T> & NativeType<T>> |
A wrapper UI class for the Connectivity Ops
|
| ElementFractionWrapper<T extends RealType<T> & NativeType<T>> |
This command estimates the size of the given sample by counting its
foreground elements, and the whole stack by counting all the elements (bone)
and the whole image stack.
|
| EllipsoidFactorWrapper |
ImageJ plugin to describe the local geometry of a binary image in an
oblate/prolate spheroid space.
|
| FitEllipsoidWrapper |
A command that takes point ROIs from the ROI manager, and tries to fit an
ellipsoid on them.
|
| FractalDimensionWrapper<T extends RealType<T> & NativeType<T>> |
This command estimates the fractal dimension of a binary image with the
box-counting algorithm.
|
| IntertrabecularAngleWrapper |
A wrapper UI class to calculate the inter-trabecular angles based on the
study by Reznikov et al (2016): (https://doi.org/10.1016/j.actbio.2016.08.040
).
|
| SkeletoniseWrapper |
A wrapper plugin to bundle Skeletonize3D into BoneJ2
|
| SurfaceAreaWrapper<T extends RealType<T> & NativeType<T>> |
A wrapper command to calculate mesh surface area
|
| SurfaceFractionWrapper<T extends RealType<T> & NativeType<T>> |
First this command creates a surface mesh from both all foreground voxels
(bone) and the whole image stack.
|
| ThicknessWrapper |
An ImageJ2 command that wraps the sc.fiji.localThickness plugin
|
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