Uses of Class
bdv.export.ExportMipmapInfo

Packages that use ExportMipmapInfo

Package	Description
bdv.export
bdv.export.n5
bdv.spimdata.tools

Uses of ExportMipmapInfo in bdv.export

Methods in bdv.export that return ExportMipmapInfo

Modifier and Type	Method and Description
static ExportMipmapInfo	ProposeMipmaps.proposeMipmaps(BasicViewSetup setup) Propose number of mipmap levels as well subsampling factors and chunk size for each level, based on the image and voxel size of the given setup.
static ExportMipmapInfo	ProposeMipmaps.proposeMipmaps(BasicViewSetup setup, int maxNumElements) Propose number of mipmap levels as well subsampling factors and chunk size for each level, based on the image and voxel size of the given setup.

Methods in bdv.export that return types with arguments of type ExportMipmapInfo

Modifier and Type	Method and Description
static Map<Integer,ExportMipmapInfo>	ProposeMipmaps.proposeMipmaps(AbstractSequenceDescription<?,?,?> seq) Propose number of mipmap levels as well subsampling factors and chunk size for each level, for each setup of the given sequence.

Methods in bdv.export with parameters of type ExportMipmapInfo

Modifier and Type	Method and Description
static <T extends RealType<T> & NativeType<T>,D> void	ExportScalePyramid.writeScalePyramid(RandomAccessibleInterval<T> img, T type, ExportMipmapInfo mipmapInfo, ExportScalePyramid.DatasetIO<D,T> io, ExecutorService executorService, int numThreads, ExportScalePyramid.LoopbackHeuristic loopbackHeuristic, ExportScalePyramid.AfterEachPlane afterEachPlane, ProgressWriter progressWriter) Write an image to a chunked mipmap representation.
static <T extends RealType<T> & NativeType<T>> void	WriteSequenceToHdf5.writeViewToHdf5PartitionFile(RandomAccessibleInterval<T> img, T type, int timepointIdPartition, int setupIdPartition, ExportMipmapInfo mipmapInfo, boolean writeMipmapInfo, boolean deflate, bdv.export.Hdf5BlockWriterThread writerQueue, ExecutorService executorService, int numThreads, ExportScalePyramid.LoopbackHeuristic loopbackHeuristic, ExportScalePyramid.AfterEachPlane afterEachPlane, ProgressWriter progressWriter) Write a single view to a hdf5 partition file, in a chunked, mipmaped representation.
static void	WriteSequenceToHdf5.writeViewToHdf5PartitionFile(RandomAccessibleInterval<UnsignedShortType> img, int timepointIdPartition, int setupIdPartition, ExportMipmapInfo mipmapInfo, boolean writeMipmapInfo, boolean deflate, bdv.export.Hdf5BlockWriterThread writerQueue, ExecutorService executorService, int numThreads, ExportScalePyramid.LoopbackHeuristic loopbackHeuristic, ExportScalePyramid.AfterEachPlane afterEachPlane, ProgressWriter progressWriter) Deprecated.
static void	WriteSequenceToHdf5.writeViewToHdf5PartitionFile(RandomAccessibleInterval<UnsignedShortType> img, Partition partition, int timepointIdPartition, int setupIdPartition, ExportMipmapInfo mipmapInfo, boolean writeMipmapInfo, boolean deflate, ExportScalePyramid.LoopbackHeuristic loopbackHeuristic, ExportScalePyramid.AfterEachPlane afterEachPlane, int numCellCreatorThreads, ProgressWriter progressWriter) Deprecated.

Method parameters in bdv.export with type arguments of type ExportMipmapInfo

Modifier and Type	Method and Description
static void	WriteSequenceToHdf5.writeHdf5File(AbstractSequenceDescription<?,?,?> seq, Map<Integer,ExportMipmapInfo> perSetupMipmapInfo, boolean deflate, File hdf5File, ExportScalePyramid.LoopbackHeuristic loopbackHeuristic, ExportScalePyramid.AfterEachPlane afterEachPlane, int numCellCreatorThreads, ProgressWriter progressWriter) Create a hdf5 file containing image data from all views and all timepoints in a chunked, mipmaped representation.
static void	WriteSequenceToHdf5.writeHdf5PartitionFile(AbstractSequenceDescription<?,?,?> seq, Map<Integer,ExportMipmapInfo> perSetupMipmapInfo, boolean deflate, Partition partition, ExportScalePyramid.LoopbackHeuristic loopbackHeuristic, ExportScalePyramid.AfterEachPlane afterEachPlane, int numCellCreatorThreads, ProgressWriter progressWriter) Create a hdf5 partition file containing image data for a subset of views and timepoints in a chunked, mipmaped representation.
static void	WriteSequenceToHdf5.writeHdf5PartitionLinkFile(AbstractSequenceDescription<?,?,?> seq, Map<Integer,ExportMipmapInfo> perSetupMipmapInfo) Create a hdf5 master file linking to image data from all views and all timepoints.
static void	WriteSequenceToHdf5.writeHdf5PartitionLinkFile(AbstractSequenceDescription<?,?,?> seq, Map<Integer,ExportMipmapInfo> perSetupMipmapInfo, ArrayList<Partition> partitions, File hdf5File) Create a hdf5 master file linking to image data from all views and all timepoints.

Uses of ExportMipmapInfo in bdv.export.n5

Method parameters in bdv.export.n5 with type arguments of type ExportMipmapInfo

Modifier and Type

Method and Description

static void

WriteSequenceToN5.writeN5File(AbstractSequenceDescription<?,?,?> seq, Map<Integer,ExportMipmapInfo> perSetupMipmapInfo, org.janelia.saalfeldlab.n5.Compression compression, File n5File, ExportScalePyramid.LoopbackHeuristic loopbackHeuristic, ExportScalePyramid.AfterEachPlane afterEachPlane, int numCellCreatorThreads, ProgressWriter progressWriter) Create a n5 group containing image data from all views and all timepoints in a chunked, mipmaped representation.

Uses of ExportMipmapInfo in bdv.spimdata.tools

Methods in bdv.spimdata.tools that return types with arguments of type ExportMipmapInfo

Modifier and Type	Method and Description
static Map<Integer,ExportMipmapInfo>	MergePartitionList.getHdf5PerSetupExportMipmapInfos(AbstractSequenceDescription<?,?,?> seq) Return map from setup id to ExportMipmapInfo for the Hdf5ImageLoader of the specified AbstractSequenceDescription.