Deprecated API

Contents

• Deprecated Interfaces
• Deprecated Classes
• Deprecated Fields
• Deprecated Methods
• Deprecated Constructors

Deprecated Interfaces

Interface and Description
bdv.viewer.VisibilityAndGrouping.UpdateListener

Deprecated Classes

Class and Description
bdv.tools.boundingbox.BoundingBoxDialog Use TransformedBoxSelectionDialog instead.
bdv.tools.brightness.BrightnessDialog
bdv.tools.brightness.SetupAssignments
bdv.util.volatiles.SharedQueue This class lives now in bigdataviewer-core. Use bdv.cache.SharedQueue instead.
bdv.viewer.state.SourceGroup
bdv.viewer.state.SourceState
bdv.viewer.state.ViewerState
bdv.viewer.VisibilityAndGrouping This is not necessary anymore, because ViewerState can be modified directly. (See ViewerPanel.state().) Manage visibility and currentness of sources and groups, as well as grouping of sources, and display mode.
bdv.viewer.VisibilityAndGrouping.Event
bdv.tools.VisibilityAndGroupingDialog
bdv.util.VolatileRandomAccessibleIntervalMipmapSource use VolatileSource

Deprecated Fields

Field and Description
bdv.viewer.NavigationActions.ALIGN_PLANE

Deprecated Methods

Method and Description
bdv.viewer.ViewerPanel.addGroup(SourceGroup) Modify ViewerPanel.state() directly
bdv.viewer.ViewerPanel.addInterpolationModeListener(InterpolationModeListener) Use interpolationModeListeners().add( listener ).
bdv.viewer.InteractiveDisplayCanvas.addOverlayRenderer(OverlayRenderer) Use overlays().add(renderer) instead
bdv.viewer.ViewerPanel.addRenderTransformListener(TransformListener<AffineTransform3D>) Use renderTransformListeners().add( listener ).
bdv.viewer.ViewerPanel.addRenderTransformListener(TransformListener<AffineTransform3D>, int) Use renderTransformListeners().add( index, listener ).
bdv.viewer.ViewerPanel.addSource(SourceAndConverter<?>) Modify ViewerPanel.state() directly
bdv.viewer.ViewerPanel.addSources(Collection<SourceAndConverter<?>>) Modify ViewerPanel.state() directly
bdv.viewer.VisibilityAndGrouping.addSourceToGroup(int, int)
bdv.viewer.ViewerPanel.addTimePointListener(TimePointListener) Use timePointListeners().add( listener ).
bdv.viewer.ViewerPanel.addTimePointListener(TimePointListener, int) Use timePointListeners().add( index, listener ).
bdv.viewer.ViewerPanel.addTransformListener(TransformListener<AffineTransform3D>) Use transformListeners().add( listener ).
bdv.viewer.ViewerPanel.addTransformListener(TransformListener<AffineTransform3D>, int) Use transformListeners().add( index, listener ).
bdv.viewer.VisibilityAndGrouping.addUpdateListener(VisibilityAndGrouping.UpdateListener)
bdv.util.PlaceHolderOverlayInfo.addVisibilityChangeListener(PlaceHolderOverlayInfo.VisibilityChangeListener) Use visibilityChangeListeners().add(listener) instead.
bdv.viewer.NavigationActions.alignPlaneAction(ViewerPanel, AbstractViewerPanel.AlignPlane, String...)
bdv.viewer.NavigationActions.alignPlanes(ViewerPanel)
bdv.BigDataViewerActions.bookmarks(BookmarksEditor)
bdv.viewer.render.AccumulateProjectorFactory.createAccumulateProjector(ArrayList<VolatileProjector>, ArrayList<Source<?>>, ArrayList<? extends RandomAccessible<? extends A>>, RandomAccessibleInterval<A>, int, ExecutorService) Use AccumulateProjectorFactory.createProjector(List, List, List, RandomAccessibleInterval, int, ExecutorService) instead. The new variant of the method is named "createProjector" instead of "createAccumulateProjector" because it has the same erasure. The default implementation of "createProjector" is forwarded to the (deprecated) "createAccumulateProjector", so existing AccumulateProjectorFactory implementations should keep working.
bdv.BigDataViewerActions.dialog(Actions, BrightnessDialog)
bdv.BigDataViewerActions.dialog(Actions, VisibilityAndGroupingDialog)
bdv.BigDataViewerActions.dialog(BrightnessDialog)
bdv.BigDataViewerActions.dialog(CropDialog)
bdv.BigDataViewerActions.dialog(HelpDialog)
bdv.BigDataViewerActions.dialog(RecordMaxProjectionDialog)
bdv.BigDataViewerActions.dialog(RecordMovieDialog)
bdv.BigDataViewerActions.dialog(VisibilityAndGroupingDialog)
bdv.ui.appearance.AppearanceManager.fromPrefs() Prefs will be replaced eventually by directly using Appearance in BDV
bdv.viewer.VisibilityAndGrouping.getCurrentGroup()
bdv.viewer.VisibilityAndGrouping.getCurrentSource()
bdv.viewer.VisibilityAndGrouping.getDisplayMode()
bdv.BigDataViewer.getInputTriggerConfig(ViewerOptions) This method is no longer used internally. InputTriggerConfigs are now managed through KeymapManager.
bdv.BigDataViewer.getSetupAssignments() Instead getViewer().state() returns the ViewerState that can be modified directly.
bdv.util.BdvHandle.getSetupAssignments()
bdv.viewer.VisibilityAndGrouping.getSourceGroups()
bdv.viewer.VisibilityAndGrouping.getSources()
bdv.tools.boundingbox.BoundingBoxUtil.getSourcesBoundingBox(ViewerState)
bdv.tools.boundingbox.BoundingBoxUtil.getSourcesBoundingBox(ViewerState, int, int)
bdv.tools.boundingbox.BoundingBoxUtil.getSourcesBoundingBoxReal(ViewerState)
bdv.tools.boundingbox.BoundingBoxUtil.getSourcesBoundingBoxReal(ViewerState, int, int)
bdv.viewer.VisibilityAndGrouping.getState()
bdv.viewer.ViewerPanel.getState() Use ViewerPanel.state() instead. Get a copy of the current ViewerState.
bdv.util.BdvFunctions.getUnusedSetupId(BigDataViewer) Ok to use for now, but shouldn't be required in the future.
bdv.util.BdvFunctions.getUnusedSetupId(SetupAssignments) Ok to use for now, but shouldn't be required in the future.
bdv.viewer.ViewerPanel.getVisibilityAndGrouping() Modify ViewerPanel.state() directly Returns the VisibilityAndGrouping that can be used to modify visibility and currentness of sources and groups, as well as grouping of sources, and display mode.
bdv.tools.InitializeViewerState.initBrightness(double, double, AbstractViewerPanel, SetupAssignments)
bdv.tools.InitializeViewerState.initBrightness(double, double, ViewerState, SetupAssignments)
bdv.tools.InitializeViewerState.initBrightness(double, double, ViewerState, SetupAssignments)
bdv.tools.InitializeViewerState.initTransform(int, int, boolean, ViewerState)
bdv.BigDataViewerActions.installActionBindings(InputActionBindings, BigDataViewer, KeyStrokeAdder.Factory)
bdv.viewer.NavigationActions.installActionBindings(InputActionBindings, ViewerPanel, KeyStrokeAdder.Factory)
bdv.viewer.NavigationActions.installAlignPlaneAction(Actions, AbstractViewerPanel, AbstractViewerPanel.AlignPlane, String...)
bdv.viewer.VisibilityAndGrouping.isFusedEnabled()
bdv.viewer.VisibilityAndGrouping.isGroupActive(int)
bdv.viewer.VisibilityAndGrouping.isGroupingEnabled()
bdv.viewer.state.ViewerState.isSingleSourceMode() replaced by ViewerState.getDisplayMode()
bdv.viewer.VisibilityAndGrouping.isSourceActive(int)
bdv.viewer.VisibilityAndGrouping.isSourceVisible(int)
bdv.BigDataViewerActions.manualTransform(ManualTransformationEditor)
bdv.viewer.NavigationActions.modes(ViewerPanel)
bdv.viewer.VisibilityAndGrouping.numGroups()
bdv.viewer.VisibilityAndGrouping.numSources()
bdv.viewer.ViewerPanel.removeAllSources() Modify ViewerPanel.state() directly
bdv.viewer.ViewerPanel.removeGroup(SourceGroup) Modify ViewerPanel.state() directly
bdv.viewer.ViewerPanel.removeInterpolationModeListener(InterpolationModeListener) Use interpolationModeListeners().remove( listener ).
bdv.viewer.InteractiveDisplayCanvas.removeOverlayRenderer(OverlayRenderer) Use overlays().remove(renderer) instead
bdv.viewer.ViewerPanel.removeSource(Source<?>) Modify ViewerPanel.state() directly
bdv.viewer.VisibilityAndGrouping.removeSourceFromGroup(int, int)
bdv.viewer.ViewerPanel.removeSources(Collection<Source<?>>) Modify ViewerPanel.state() directly
bdv.viewer.ViewerPanel.removeTimePointListener(TimePointListener) Use timePointListeners().remove( listener ).
bdv.viewer.ViewerPanel.removeTransformListener(TransformListener<AffineTransform3D>) Use transformListeners().remove( listener ) or renderTransformListeners().remove( listener ) (whichever the listener was added to).
bdv.viewer.VisibilityAndGrouping.removeUpdateListener(VisibilityAndGrouping.UpdateListener)
bdv.util.PlaceHolderOverlayInfo.removeVisibilityChangeListener(PlaceHolderOverlayInfo.VisibilityChangeListener) Use visibilityChangeListeners().remove(listener) instead.
bdv.viewer.VisibilityAndGrouping.setCurrentGroup(int)
bdv.viewer.VisibilityAndGrouping.setCurrentGroupOrSource(int)
bdv.viewer.VisibilityAndGrouping.setCurrentSource(int)
bdv.viewer.VisibilityAndGrouping.setCurrentSource(Source<?>)
bdv.viewer.ViewerPanel.setCurrentViewerTransform(AffineTransform3D) Modify ViewerPanel.state() directly (state().setViewerTransform(t))
bdv.viewer.VisibilityAndGrouping.setDisplayMode(DisplayMode)
bdv.viewer.VisibilityAndGrouping.setFusedEnabled(boolean)
bdv.viewer.VisibilityAndGrouping.setGroupActive(int, boolean)
bdv.viewer.VisibilityAndGrouping.setGroupingEnabled(boolean)
bdv.viewer.VisibilityAndGrouping.setGroupName(int, String)
bdv.viewer.state.ViewerState.setSingleSourceMode(boolean) replaced by ViewerState.setDisplayMode(DisplayMode)
bdv.viewer.VisibilityAndGrouping.setSourceActive(int, boolean)
bdv.viewer.VisibilityAndGrouping.setSourceActive(Source<?>, boolean)
bdv.tools.brightness.ConverterSetup.setViewer(RequestRepaint)
bdv.viewer.overlay.ScaleBarOverlayRenderer.setViewerState(ViewerState)
bdv.viewer.overlay.MultiBoxOverlayRenderer.setViewerState(ViewerState)
bdv.viewer.overlay.SourceInfoOverlayRenderer.setViewerState(ViewerState)
bdv.viewer.NavigationActions.sources(ViewerPanel)
bdv.viewer.NavigationActions.time(ViewerPanel)
bdv.viewer.VisibilityAndGrouping.toggleActiveGroupOrSource(int)
bdv.BigDataViewerActions.toggleDialogAction(Dialog, String, String...)
bdv.ui.appearance.AppearanceManager.toPrefs() Prefs will be replaced eventually by directly using Appearance in BDV
bdv.viewer.VisibilityAndGrouping.update(int)
bdv.util.volatiles.VolatileViews.wrapAsVolatile(RandomAccessible<T>, SharedQueue) Use bdv.cache.SharedQueue instead of bdv.util.volatiles.SharedQueue
bdv.util.volatiles.VolatileViews.wrapAsVolatile(RandomAccessible<T>, SharedQueue, CacheHints) Use bdv.cache.SharedQueue instead of bdv.util.volatiles.SharedQueue
bdv.util.volatiles.VolatileViews.wrapAsVolatile(RandomAccessibleInterval<T>, SharedQueue) Use bdv.cache.SharedQueue instead of bdv.util.volatiles.SharedQueue
bdv.util.volatiles.VolatileViews.wrapAsVolatile(RandomAccessibleInterval<T>, SharedQueue, CacheHints) Use bdv.cache.SharedQueue instead of bdv.util.volatiles.SharedQueue
bdv.export.WriteSequenceToHdf5.writeViewToHdf5PartitionFile(RandomAccessibleInterval<UnsignedShortType>, int, int, ExportMipmapInfo, boolean, boolean, Hdf5BlockWriterThread, ExecutorService, int, ExportScalePyramid.LoopbackHeuristic, ExportScalePyramid.AfterEachPlane, ProgressWriter)
bdv.export.WriteSequenceToHdf5.writeViewToHdf5PartitionFile(RandomAccessibleInterval<UnsignedShortType>, Partition, int, int, ExportMipmapInfo, boolean, boolean, ExportScalePyramid.LoopbackHeuristic, ExportScalePyramid.AfterEachPlane, int, ProgressWriter)

Deprecated Constructors

Constructor and Description
bdv.viewer.render.AccumulateProjector(List<VolatileProjector>, List<? extends RandomAccessible<? extends A>>, RandomAccessibleInterval<B>, int, ExecutorService) Use AccumulateProjector(List, List, RandomAccessibleInterval). The numThreads and executorService arguments are ignored.
bdv.BigDataViewer(ArrayList<ConverterSetup>, ArrayList<SourceAndConverter<?>>, AbstractSpimData<?>, int, CacheControl, String, ProgressWriter, ViewerOptions)
bdv.BigDataViewerActions(KeyStrokeAdder.Factory)
bdv.viewer.NavigationActions(KeyStrokeAdder.Factory)
bdv.util.volatiles.SharedQueue(int)
bdv.util.volatiles.SharedQueue(int, int)
bdv.viewer.VisibilityAndGrouping(ViewerState)
bdv.img.cache.VolatileCachedCellImg(CellGrid, Fraction, Function<NativeImg<T, ? super A>, T>, CacheHints, VolatileCachedCellImg.Get<Cell<A>>) Construct with a VolatileCache using VolatileCachedCellImg(CellGrid, NativeType, CacheHints, VolatileCache).
bdv.img.cache.VolatileCachedCellImg(CellGrid, T, CacheHints, VolatileCachedCellImg.Get<Cell<A>>) Construct with a VolatileCache using VolatileCachedCellImg(CellGrid, NativeType, CacheHints, VolatileCache).