mpicbg.spim.data.generic.sequence

Class AbstractSequenceDescription<V extends BasicViewSetup,D extends BasicViewDescription<V>,L extends BasicImgLoader>

java.lang.Object

mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<V,D,L>

Type Parameters:

V - ViewSetup type

Direct Known Subclasses:

SequenceDescription

public abstract class AbstractSequenceDescription<V extends BasicViewSetup,D extends BasicViewDescription<V>,L extends BasicImgLoader>
extends Object

A SPIM sequence consisting of a list of timepoints and a list of view setups. Every (timepoint, setup) pair is a view (i.e., an image stack acquired at that time with that setup).

Author:

Tobias Pietzsch <tobias.pietzsch@gmail.com>

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	AbstractSequenceDescription()
	AbstractSequenceDescription(TimePoints timepoints, Map<Integer,? extends V> setups, L imgLoader, MissingViews missingViews)

Method Summary

Modifier and Type	Method and Description
protected abstract D	createViewDescription(int timepointId, int setupId)
protected void	createViewDescriptions()
L	getImgLoader()
MissingViews	getMissingViews()
TimePoints	getTimePoints()
Map<ViewId,D>	getViewDescriptions()
Map<Integer,? extends V>	getViewSetups()
List<V>	getViewSetupsOrdered()
void	setImgLoader(L imgLoader)
protected void	setMissingViews(MissingViews missingViews)
protected void	setTimePoints(TimePoints timepoints)
protected void	setViewSetups(Map<Integer,? extends V> setups)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractSequenceDescription

public AbstractSequenceDescription(TimePoints timepoints,
                                   Map<Integer,? extends V> setups,
                                   L imgLoader,
                                   MissingViews missingViews)

AbstractSequenceDescription

protected AbstractSequenceDescription()

Method Detail

getTimePoints

public TimePoints getTimePoints()

getViewSetups

public Map<Integer,? extends V> getViewSetups()

getViewSetupsOrdered

public List<V> getViewSetupsOrdered()

getImgLoader

public L getImgLoader()

getMissingViews

public MissingViews getMissingViews()

getViewDescriptions

public Map<ViewId,D> getViewDescriptions()

setTimePoints

protected void setTimePoints(TimePoints timepoints)

setViewSetups

protected void setViewSetups(Map<Integer,? extends V> setups)

setImgLoader

public void setImgLoader(L imgLoader)

setMissingViews

protected void setMissingViews(MissingViews missingViews)

createViewDescriptions

protected void createViewDescriptions()

createViewDescription

protected abstract D createViewDescription(int timepointId,
                                           int setupId)