Uses of Class
fiji.plugin.trackmate.SpotCollection

Packages that use SpotCollection

Package	Description
fiji.plugin.trackmate
fiji.plugin.trackmate.action
fiji.plugin.trackmate.features
fiji.plugin.trackmate.tracking
fiji.plugin.trackmate.tracking.jaqaman	Classes that implements the tracking logic of the framework described first in:
fiji.plugin.trackmate.tracking.kalman
fiji.plugin.trackmate.tracking.kdtree
fiji.plugin.trackmate.tracking.manual	Classes implementing the manual tracker.
fiji.plugin.trackmate.tracking.overlap

Uses of SpotCollection in fiji.plugin.trackmate

Fields in fiji.plugin.trackmate declared as SpotCollection

Modifier and Type	Field and Description
protected SpotCollection	Model.spots The spots managed by this model.

Methods in fiji.plugin.trackmate that return SpotCollection

Modifier and Type	Method and Description
static SpotCollection	SpotCollection.fromCollection(Iterable<Spot> spots) Creates a new SpotCollection containing only the specified spots.
static SpotCollection	SpotCollection.fromMap(Map<Integer,Set<Spot>> source) Creates a new SpotCollection from a copy of the specified map of sets.
SpotCollection	Model.getSpots() Returns the spot collection managed by this model.

Methods in fiji.plugin.trackmate with parameters of type SpotCollection

Modifier and Type	Method and Description
void	Model.setSpots(SpotCollection spots, boolean doNotify) Set the SpotCollection managed by this model.

Uses of SpotCollection in fiji.plugin.trackmate.action

Methods in fiji.plugin.trackmate.action with parameters of type SpotCollection

Modifier and Type	Method and Description
static <T extends RealType<T> & NativeType<T>> ImgPlus<T>	LabelImgExporter.createLabelImg(SpotCollection spots, long[] dimensions, double[] calibration, boolean exportSpotsAsDots, LabelImgExporter.LabelIdPainting labelIdPainting, T outputType, Logger logger) Creates a new label ImgPlus of FloatType where the spots are painted with an ID.

Uses of SpotCollection in fiji.plugin.trackmate.features

Methods in fiji.plugin.trackmate.features with parameters of type SpotCollection

Modifier and Type	Method and Description
void	SpotFeatureCalculator.computeSpotFeatures(SpotCollection toCompute, boolean doLogIt) Calculates all the spot features configured in the Settings object, but only for the spots in the specified collection.

Uses of SpotCollection in fiji.plugin.trackmate.tracking

Methods in fiji.plugin.trackmate.tracking with parameters of type SpotCollection

Modifier and Type	Method and Description
default SpotTracker	SpotImageTrackerFactory.create(SpotCollection spots, Map<String,Object> settings)
SpotTracker	SpotTrackerFactory.create(SpotCollection spots, Map<String,Object> settings) Instantiates and returns a new SpotTracker configured to operate on the specified SpotCollection, using the specified settins map.
SpotTracker	SpotImageTrackerFactory.create(SpotCollection spots, Map<String,Object> settings, ij.ImagePlus input) Instantiates and returns a new SpotTracker configured to operate on the specified SpotCollection, using the specified settins map.

Uses of SpotCollection in fiji.plugin.trackmate.tracking.jaqaman

Fields in fiji.plugin.trackmate.tracking.jaqaman declared as SpotCollection

Modifier and Type	Field and Description
protected SpotCollection	SparseLAPFrameToFrameTracker.spots

Methods in fiji.plugin.trackmate.tracking.jaqaman with parameters of type SpotCollection

Modifier and Type	Method and Description
SpotTracker	SparseLAPTrackerFactory.create(SpotCollection spots, Map<String,Object> settings)

Constructors in fiji.plugin.trackmate.tracking.jaqaman with parameters of type SpotCollection

Constructor and Description
SparseLAPFrameToFrameTracker(SpotCollection spots, Map<String,Object> settings)
SparseLAPTracker(SpotCollection spots, Map<String,Object> settings)

Uses of SpotCollection in fiji.plugin.trackmate.tracking.kalman

Methods in fiji.plugin.trackmate.tracking.kalman that return SpotCollection

Modifier and Type	Method and Description
SpotCollection	KalmanTracker.getPredictions() Returns the saved predicted state as a SpotCollection.

Methods in fiji.plugin.trackmate.tracking.kalman with parameters of type SpotCollection

Modifier and Type	Method and Description
SpotTracker	AdvancedKalmanTrackerFactory.create(SpotCollection spots, Map<String,Object> settings)
SpotTracker	KalmanTrackerFactory.create(SpotCollection spots, Map<String,Object> settings)

Constructors in fiji.plugin.trackmate.tracking.kalman with parameters of type SpotCollection

Constructor and Description
AdvancedKalmanTracker(SpotCollection spots, Map<String,Object> settings)
KalmanTracker(SpotCollection spots, double maxSearchRadius, int maxFrameGap, double initialSearchRadius, Map<String,Double> featurePenalties)

Uses of SpotCollection in fiji.plugin.trackmate.tracking.kdtree

Fields in fiji.plugin.trackmate.tracking.kdtree declared as SpotCollection

Modifier and Type	Field and Description
protected SpotCollection	NearestNeighborTracker.spots

Methods in fiji.plugin.trackmate.tracking.kdtree with parameters of type SpotCollection

Modifier and Type	Method and Description
SpotTracker	NearestNeighborTrackerFactory.create(SpotCollection spots, Map<String,Object> settings)

Constructors in fiji.plugin.trackmate.tracking.kdtree with parameters of type SpotCollection

Constructor and Description
NearestNeighborTracker(SpotCollection spots, Map<String,Object> settings)

Uses of SpotCollection in fiji.plugin.trackmate.tracking.manual

Methods in fiji.plugin.trackmate.tracking.manual with parameters of type SpotCollection

Modifier and Type	Method and Description
SpotTracker	ManualTrackerFactory.create(SpotCollection spots, Map<String,Object> settings)

Uses of SpotCollection in fiji.plugin.trackmate.tracking.overlap

Methods in fiji.plugin.trackmate.tracking.overlap with parameters of type SpotCollection

Modifier and Type	Method and Description
SpotTracker	OverlapTrackerFactory.create(SpotCollection spots, Map<String,Object> settings)

Constructors in fiji.plugin.trackmate.tracking.overlap with parameters of type SpotCollection

Constructor and Description
OverlapTracker(SpotCollection spots, OverlapTracker.IoUCalculation method, double minIoU, double enlargeFactor)