Package fiji.plugin.trackmate.tracking.jaqaman

Classes that implements the tracking logic of the framework described first in:

See: Description

Class Summary

Class	Description
JaqamanLinker<K extends Comparable<K>,J extends Comparable<J>>	Links two lists of objects based on the LAP framework described in Jaqaman et al., Nature Methods, 2008.
LAPUtils
SegmentTracker	This class tracks deals with the second step of tracking according to the LAP tracking framework formulated by Jaqaman, K.
SegmentTrackerFactory	Base class for trackers with split/merge actions.
SimpleSparseLAPTrackerFactory
SparseLAPFrameToFrameTracker
SparseLAPTracker
SparseLAPTrackerFactory

Package fiji.plugin.trackmate.tracking.jaqaman Description

Classes that implements the tracking logic of the framework described first in:

Robust single-particle tracking in live-cell time-lapse sequences.
Khuloud Jaqaman, Dinah Loerke, Marcel Mettlen, Hirotaka Kuwata, Sergio Grinstein, Sandra L Schmid, Gaudenz Danuser.
Nat Methods. 2008 Aug;5(8):695-702. doi: 10.1038/nmeth.1237. Epub 2008 Jul 20.
 

The trackers implemented here have some substantial changes compared to the tracker described in the paper above. There changes are summarized here. The general framework is also used elsewhere in TrackMate for other trackers.

Author:

Jean-Yves Tinevez