Uses of Class
net.preibisch.mvrecon.fiji.spimdata.boundingbox.BoundingBox

Packages that use BoundingBox

Package	Description
net.preibisch.mvrecon.fiji.plugin
net.preibisch.mvrecon.fiji.plugin.boundingbox
net.preibisch.mvrecon.fiji.plugin.fusion
net.preibisch.mvrecon.fiji.plugin.util
net.preibisch.mvrecon.fiji.spimdata.boundingbox
net.preibisch.mvrecon.process.boundingbox
net.preibisch.mvrecon.process.fusion.lazy
net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.overlap

Uses of BoundingBox in net.preibisch.mvrecon.fiji.plugin

Methods in net.preibisch.mvrecon.fiji.plugin that return BoundingBox

Modifier and Type	Method	Description
BoundingBox	Define_Bounding_Box.defineBoundingBox(SpimData2 data, List<mpicbg.spim.data.sequence.ViewId> viewIds)
BoundingBox	Define_Bounding_Box.defineBoundingBox(SpimData2 data, List<mpicbg.spim.data.sequence.ViewId> viewIds, String xmlFileName, boolean saveXML)

Method parameters in net.preibisch.mvrecon.fiji.plugin with type arguments of type BoundingBox

Modifier and Type	Method	Description
protected String	Define_Bounding_Box.updateDefaultName(String defaultName, List<BoundingBox> bbs)

Uses of BoundingBox in net.preibisch.mvrecon.fiji.plugin.boundingbox

Subclasses of BoundingBox in net.preibisch.mvrecon.fiji.plugin.boundingbox

Modifier and Type	Class	Description
class	AutomaticReorientationBoundingBoxGUI
class	BDVBoundingBoxGUI
class	BoundingBoxGUI
class	MaximumBoundingBoxGUI
class	MinFilterThresholdBoundingBoxGUI
class	ModifyDefinedBoundingBoxGUI

Constructors in net.preibisch.mvrecon.fiji.plugin.boundingbox with parameters of type BoundingBox

Modifier	Constructor	Description
	BoundingBoxGUI(SpimData2 spimData, List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess, BoundingBox bb)

Uses of BoundingBox in net.preibisch.mvrecon.fiji.plugin.fusion

Methods in net.preibisch.mvrecon.fiji.plugin.fusion that return BoundingBox

Modifier and Type	Method	Description
BoundingBox	DeconvolutionGUI.getBoundingBox()

Method parameters in net.preibisch.mvrecon.fiji.plugin.fusion with type arguments of type BoundingBox

Modifier and Type	Method	Description
static String[]	FusionGUI.getBoundingBoxChoices(List<BoundingBox> allBoxes)
static String[]	FusionGUI.getBoundingBoxChoices(List<BoundingBox> allBoxes, boolean showDimensions)

Uses of BoundingBox in net.preibisch.mvrecon.fiji.plugin.util

Method parameters in net.preibisch.mvrecon.fiji.plugin.util with type arguments of type BoundingBox

Modifier and Type	Method	Description
static void	GUIHelper.displayBoundingBoxes(ij.gui.GenericDialog gd, List<BoundingBox> bbs)

Uses of BoundingBox in net.preibisch.mvrecon.fiji.spimdata.boundingbox

Methods in net.preibisch.mvrecon.fiji.spimdata.boundingbox that return types with arguments of type BoundingBox

Modifier and Type	Method	Description
List<BoundingBox>	BoundingBoxes.getBoundingBoxes()

Methods in net.preibisch.mvrecon.fiji.spimdata.boundingbox with parameters of type BoundingBox

Modifier and Type	Method	Description
void	BoundingBoxes.addBoundingBox(BoundingBox box)
protected org.jdom2.Element	XmlIoBoundingBoxes.boundingBoxToXml(BoundingBox bb)
int	BoundingBox.compareTo(BoundingBox o)
static String	BoundingBox.getBoundingBoxDescription(BoundingBox bb)

Constructor parameters in net.preibisch.mvrecon.fiji.spimdata.boundingbox with type arguments of type BoundingBox

Modifier	Constructor	Description
	BoundingBoxes(Collection<BoundingBox> boundingBoxes)

Uses of BoundingBox in net.preibisch.mvrecon.process.boundingbox

Methods in net.preibisch.mvrecon.process.boundingbox that return BoundingBox

Modifier and Type	Method	Description
BoundingBox	BoundingBoxBigDataViewer.estimate(String title)
BoundingBox	BoundingBoxEstimation.estimate(String title)
BoundingBox	BoundingBoxMaximal.estimate(String title)
BoundingBox	BoundingBoxMaximalGroupOverlap.estimate(String title)
BoundingBox	BoundingBoxMinFilterThreshold.estimate(String title)
BoundingBox	BoundingBoxReorientation.estimate(String title)
static BoundingBox	BoundingBoxTools.getBoundingBox(SpimData2 spimData, String bbTitle)	Finds a bounding box by title in the SpimData2 bounding box collection.
static BoundingBox	BoundingBoxTools.maximalBoundingBox(Collection<? extends mpicbg.spim.data.sequence.ViewId> views, HashMap<? extends mpicbg.spim.data.sequence.ViewId,net.imglib2.Dimensions> dimensions, HashMap<? extends mpicbg.spim.data.sequence.ViewId,net.imglib2.realtransform.AffineTransform3D> registrations, String title)
static <V extends mpicbg.spim.data.sequence.ViewId> BoundingBox	BoundingBoxTools.maximalBoundingBox(SpimData2 spimData, Collection<V> viewIds, String title)

Methods in net.preibisch.mvrecon.process.boundingbox that return types with arguments of type BoundingBox

Modifier and Type	Method	Description
static List<BoundingBox>	BoundingBoxTools.getAllBoundingBoxes(SpimData2 spimData, Collection<mpicbg.spim.data.sequence.ViewId> currentlySelected, boolean addBoundingBoxForAllViews)

Uses of BoundingBox in net.preibisch.mvrecon.process.fusion.lazy

Methods in net.preibisch.mvrecon.process.fusion.lazy that return BoundingBox

Modifier and Type	Method	Description
static BoundingBox	LazyFusionTools.getBoundingBox(SpimData2 data, List<mpicbg.spim.data.sequence.ViewId> viewIds, String boundingBoxName)

Uses of BoundingBox in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.overlap

Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.overlap that return BoundingBox

Modifier and Type	Method	Description
static BoundingBox	SimpleBoundingBoxOverlap.getBoundingBox(mpicbg.spim.data.generic.sequence.BasicViewSetup vs, mpicbg.spim.data.registration.ViewRegistration vr)
static BoundingBox	SimpleBoundingBoxOverlap.getBoundingBox(net.imglib2.Dimensions dims, net.imglib2.realtransform.AffineTransform3D transform)
static <V extends mpicbg.spim.data.sequence.ViewId> BoundingBox	SimpleBoundingBoxOverlap.getBoundingBox(V view, Map<Integer,? extends mpicbg.spim.data.generic.sequence.BasicViewSetup> vss, mpicbg.spim.data.registration.ViewRegistrations vrs)

Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.overlap that return types with arguments of type BoundingBox

Modifier and Type	Method	Description
Map<V,BoundingBox>	SimpleBoundingBoxOverlap.precomputeBoundingBoxes(Collection<V> views)	Pre-compute all bounding boxes for a collection of views in parallel.

Methods in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.overlap with parameters of type BoundingBox

Modifier and Type	Method	Description
static boolean	SimpleBoundingBoxOverlap.overlaps(BoundingBox bb1, BoundingBox bb2)

Method parameters in net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.overlap with type arguments of type BoundingBox

Modifier and Type	Method	Description
ArrayList<net.imglib2.util.Pair<V,V>>	SimpleBoundingBoxOverlap.removeNonOverlappingPairsParallel(List<net.imglib2.util.Pair<V,V>> pairs, Map<V,BoundingBox> boundingBoxes)	Filter overlapping pairs using pre-computed bounding boxes in parallel.