Package net.preibisch.mvrecon.fiji.plugin.boundingbox

Class BoundingBoxGUI

java.lang.Object

net.preibisch.mvrecon.fiji.spimdata.boundingbox.BoundingBox

net.preibisch.mvrecon.fiji.plugin.boundingbox.BoundingBoxGUI

All Implemented Interfaces:

Comparable<BoundingBox>, net.imglib2.Dimensions, net.imglib2.EuclideanSpace, net.imglib2.Interval, net.imglib2.RealInterval

Direct Known Subclasses:

AutomaticReorientationBoundingBoxGUI, BDVBoundingBoxGUI, MaximumBoundingBoxGUI, MinFilterThresholdBoundingBoxGUI, ModifyDefinedBoundingBoxGUI

public abstract class BoundingBoxGUI
extends BoundingBox

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
class	BoundingBoxGUI.ManageListeners

Field Summary

Fields

Modifier and Type	Field	Description
static int[]	defaultMax
static int[]	defaultMin
protected final SpimData2	spimData
protected final List<mpicbg.spim.data.sequence.ViewId>	viewIdsToProcess

Fields inherited from class net.preibisch.mvrecon.fiji.spimdata.boundingbox.BoundingBox

max, min, title

Constructor Summary

Constructors

Constructor	Description
BoundingBoxGUI(SpimData2 spimData, List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess)
BoundingBoxGUI(SpimData2 spimData, List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess, BoundingBox bb)

Method Summary

Modifier and Type	Method	Description
protected abstract boolean	allowModifyDimensions()
protected static boolean	findRange(SpimData2 spimData, List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess, int[] rangeMin, int[] rangeMax)
abstract String	getDescription()
protected ij.gui.GenericDialog	getSimpleDialog(boolean allowModifyDimensions)
abstract BoundingBoxGUI	newInstance(SpimData2 spimData, List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess)
boolean	queryParameters()
protected abstract boolean	setUpDefaultValues(int[] rangeMin, int[] rangeMax)	populates this.min[] and this.max[] from the defaultMin and defaultMax

Methods inherited from class net.preibisch.mvrecon.fiji.spimdata.boundingbox.BoundingBox

compareTo, dimension, dimensions, getBoundingBoxDescription, getDimensions, getMax, getMin, getTitle, max, max, max, min, min, min, numDimensions, realMax, realMax, realMax, realMin, realMin, realMin, setTitle, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.imglib2.Dimensions

dimensions, dimensionsAsLongArray, dimensionsAsPoint

Methods inherited from interface net.imglib2.Interval

maxAsLongArray, maxAsPoint, minAsLongArray, minAsPoint

Methods inherited from interface net.imglib2.RealInterval

maxAsDoubleArray, maxAsRealPoint, minAsDoubleArray, minAsRealPoint

Field Details

defaultMin

public static int[] defaultMin

defaultMax

public static int[] defaultMax

viewIdsToProcess

protected final List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess

spimData

protected final SpimData2 spimData

Constructor Details

BoundingBoxGUI

public BoundingBoxGUI(SpimData2 spimData,
 List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess)

BoundingBoxGUI

public BoundingBoxGUI(SpimData2 spimData,
 List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess,
 BoundingBox bb)

Method Details

allowModifyDimensions

protected abstract boolean allowModifyDimensions()

queryParameters

public boolean queryParameters()

getSimpleDialog

protected ij.gui.GenericDialog getSimpleDialog(boolean allowModifyDimensions)

findRange

protected static boolean findRange(SpimData2 spimData,
 List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess,
 int[] rangeMin,
 int[] rangeMax)

setUpDefaultValues

protected abstract boolean setUpDefaultValues(int[] rangeMin,
 int[] rangeMax)

populates this.min[] and this.max[] from the defaultMin and defaultMax

Parameters:

rangeMin - - will be populated with the maximal dimension that all views span

rangeMax - - will be populated with the maximal dimension that all views span

Returns:

true if it was successful, otherwise false

newInstance

public abstract BoundingBoxGUI newInstance(SpimData2 spimData,
 List<mpicbg.spim.data.sequence.ViewId> viewIdsToProcess)

Parameters:

spimData - - the spimdata

viewIdsToProcess - - which view ids to fuse

Returns:

- a new instance without any special properties

getDescription

public abstract String getDescription()

Returns:

- to be displayed in the generic dialog