Package net.preibisch.mvrecon.process.fusion.lazy

Class LazyFusionTools

java.lang.Object

net.preibisch.mvrecon.process.fusion.lazy.LazyFusionTools

public class LazyFusionTools
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
static int	defaultAffineExpansion
static int[]	defaultBlockSize2d
static int[]	defaultBlockSize3d
static int	defaultNonrigidExpansion

Constructor Summary

Constructors

Constructor	Description
LazyFusionTools()

Method Summary

Modifier and Type	Method	Description
static HashMap<mpicbg.spim.data.sequence.ViewId,net.imglib2.Dimensions>	assembleDimensions(Collection<? extends mpicbg.spim.data.sequence.ViewId> viewIds, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> viewDescriptions)
static HashMap<mpicbg.spim.data.sequence.ViewId,net.imglib2.Dimensions>	assembleDimensions(Collection<? extends mpicbg.spim.data.sequence.ViewId> viewIds, mpicbg.spim.data.SpimData data)
static double	estimateAnisotropy(mpicbg.spim.data.SpimData data, List<mpicbg.spim.data.sequence.ViewId> viewIds)
static BoundingBox	getBoundingBox(SpimData2 data, List<mpicbg.spim.data.sequence.ViewId> viewIds, String boundingBoxName)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.RandomAccessibleInterval<T>	initLazy(Consumer<net.imglib2.RandomAccessibleInterval<T>> consumer, net.imglib2.Interval fusionInterval, int[] blockSize, T type)
static final ArrayList<mpicbg.spim.data.sequence.ViewId>	overlappingViewIds(net.imglib2.Interval targetBlock, Collection<? extends mpicbg.spim.data.sequence.ViewId> allViewIds, Map<? extends mpicbg.spim.data.sequence.ViewId,? extends net.imglib2.realtransform.AffineTransform3D> viewRegistrations, Map<? extends mpicbg.spim.data.sequence.ViewId,? extends net.imglib2.Dimensions> viewDimensions, int expandOverlap)
static boolean	overlaps(net.imglib2.Interval interval1, net.imglib2.Interval interval2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

defaultAffineExpansion

public static int defaultAffineExpansion

defaultNonrigidExpansion

public static int defaultNonrigidExpansion

defaultBlockSize2d

public static int[] defaultBlockSize2d

defaultBlockSize3d

public static int[] defaultBlockSize3d

Constructor Details

LazyFusionTools

public LazyFusionTools()

Method Details

initLazy

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>
net.imglib2.RandomAccessibleInterval<T> initLazy(Consumer<net.imglib2.RandomAccessibleInterval<T>> consumer,
 net.imglib2.Interval fusionInterval,
 int[] blockSize,
 T type)

estimateAnisotropy

public static double estimateAnisotropy(mpicbg.spim.data.SpimData data,
 List<mpicbg.spim.data.sequence.ViewId> viewIds)

getBoundingBox

public static BoundingBox getBoundingBox(SpimData2 data,
 List<mpicbg.spim.data.sequence.ViewId> viewIds,
 String boundingBoxName)
                                  throws IllegalArgumentException

Throws:

IllegalArgumentException

assembleDimensions

public static HashMap<mpicbg.spim.data.sequence.ViewId,net.imglib2.Dimensions> assembleDimensions(Collection<? extends mpicbg.spim.data.sequence.ViewId> viewIds,
 mpicbg.spim.data.SpimData data)

assembleDimensions

public static HashMap<mpicbg.spim.data.sequence.ViewId,net.imglib2.Dimensions> assembleDimensions(Collection<? extends mpicbg.spim.data.sequence.ViewId> viewIds,
 Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> viewDescriptions)

overlappingViewIds

public static final ArrayList<mpicbg.spim.data.sequence.ViewId> overlappingViewIds(net.imglib2.Interval targetBlock,
 Collection<? extends mpicbg.spim.data.sequence.ViewId> allViewIds,
 Map<? extends mpicbg.spim.data.sequence.ViewId,? extends net.imglib2.realtransform.AffineTransform3D> viewRegistrations,
 Map<? extends mpicbg.spim.data.sequence.ViewId,? extends net.imglib2.Dimensions> viewDimensions,
 int expandOverlap)

overlaps

public static boolean overlaps(net.imglib2.Interval interval1,
 net.imglib2.Interval interval2)