Package net.preibisch.mvrecon.process.boundingbox

Class BoundingBoxMaximalGroupOverlap<V extends mpicbg.spim.data.sequence.ViewId>

java.lang.Object

net.preibisch.mvrecon.process.boundingbox.BoundingBoxMaximalGroupOverlap<V>

All Implemented Interfaces:

BoundingBoxEstimation

public class BoundingBoxMaximalGroupOverlap<V extends mpicbg.spim.data.sequence.ViewId>
extends Object
implements BoundingBoxEstimation

Field Summary

Fields

Modifier and Type	Field	Description
protected final mpicbg.spim.data.registration.ViewRegistrations	vrs
protected final Map<Integer,? extends mpicbg.spim.data.generic.sequence.BasicViewSetup>	vss

Constructor Summary

Constructors

Constructor	Description
BoundingBoxMaximalGroupOverlap(Collection<? extends Iterable<V>> viewGroups, mpicbg.spim.data.generic.AbstractSpimData<?> spimData)
BoundingBoxMaximalGroupOverlap(Collection<? extends Iterable<V>> viewGroups, mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<? extends mpicbg.spim.data.generic.sequence.BasicViewSetup,?,?> sd, mpicbg.spim.data.registration.ViewRegistrations vrs)

Method Summary

Modifier and Type	Method	Description
BoundingBox	estimate(String title)
static net.imglib2.FinalRealInterval	estimateBounds(net.imglib2.RealInterval interval, net.imglib2.realtransform.AffineGet transform)	Calculate the boundary interval of an interval after it has been transformed by transform.
static net.imglib2.RealInterval	getMinBoundingInterval(Collection<Collection<net.imglib2.util.Pair<net.imglib2.RealInterval,net.imglib2.realtransform.AffineGet>>> viewGroups)
static net.imglib2.RealInterval	getMinBoundingIntervalSingle(Collection<net.imglib2.util.Pair<net.imglib2.RealInterval,net.imglib2.realtransform.AffineGet>> views)
static void	main(String[] args)
static net.imglib2.FinalRealInterval	realUnion(net.imglib2.RealInterval intervalA, net.imglib2.RealInterval intervalB)	Compute the smallest interval that contains both input intervals.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

vrs

protected final mpicbg.spim.data.registration.ViewRegistrations vrs

vss

protected final Map<Integer,? extends mpicbg.spim.data.generic.sequence.BasicViewSetup> vss

Constructor Details

BoundingBoxMaximalGroupOverlap

public BoundingBoxMaximalGroupOverlap(Collection<? extends Iterable<V>> viewGroups,
 mpicbg.spim.data.generic.AbstractSpimData<?> spimData)

BoundingBoxMaximalGroupOverlap

public BoundingBoxMaximalGroupOverlap(Collection<? extends Iterable<V>> viewGroups,
 mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<? extends mpicbg.spim.data.generic.sequence.BasicViewSetup,?,?> sd,
 mpicbg.spim.data.registration.ViewRegistrations vrs)

Method Details

estimate

public BoundingBox estimate(String title)

Specified by:

estimate in interface BoundingBoxEstimation

getMinBoundingInterval

public static net.imglib2.RealInterval getMinBoundingInterval(Collection<Collection<net.imglib2.util.Pair<net.imglib2.RealInterval,net.imglib2.realtransform.AffineGet>>> viewGroups)

realUnion

public static net.imglib2.FinalRealInterval realUnion(net.imglib2.RealInterval intervalA,
 net.imglib2.RealInterval intervalB)

Compute the smallest interval that contains both input intervals. Create a FinalInterval that represents that interval.

Parameters:

intervalA - input interval

intervalB - input interval

Returns:

union of input intervals

getMinBoundingIntervalSingle

public static net.imglib2.RealInterval getMinBoundingIntervalSingle(Collection<net.imglib2.util.Pair<net.imglib2.RealInterval,net.imglib2.realtransform.AffineGet>> views)

estimateBounds

public static net.imglib2.FinalRealInterval estimateBounds(net.imglib2.RealInterval interval,
 net.imglib2.realtransform.AffineGet transform)

Calculate the boundary interval of an interval after it has been transformed by transform. generalized version of code in AffineTransform3D

Parameters:

interval - - the interval

transform - - the transform

Returns:

- boundary of transformed interval

main

public static void main(String[] args)