Format format
boolean filtered
boolean openDataset
boolean bufferedReading
MetadataLevel level
boolean filterMetadata
boolean saveOriginalMetadata
boolean writeSequential
boolean failIfOverwriting
ColorModel model
int fps
String compression
CodecOptions options
boolean group
SCIFIOConfig.ImgMode[] imgModes
boolean openAll
Range range
ImageRegion region
boolean computeMinMax
PlaneConverter planeConverter
ImgFactoryHeuristic imgFactoryHeuristic
boolean writeRGB
org.scijava.log.LogService logService
Metadata meta
InitializeService initializeService
int lutLength
ImageMetadata imgMeta
APNGFormat.ACTLChunk actl
APNGFormat.IHDRChunk ihdr
APNGFormat.PLTEChunk plte
APNGFormat.IENDChunk iend
boolean separateDefault
boolean signed
boolean littleEndian
List<E> offsets
List<E> lengths
short bmpBitsPerPixel
int bmpCompression
int bmpScanLineSize
int bmpColorsUsed
int bmpWidth
int bytesPerPlane
net.imglib2.display.ColorTable lut
ByteArrayPlane lastPlane
long lastPlaneIndex
int[] lastDims
net.imglib2.display.ColorTable8 palette
int compression
long global
boolean invertY
net.imglib2.display.ColorTable8 lut8
net.imglib2.display.ColorTable16 lut16
long[] offsets
boolean isJP2K
boolean isJPEG
boolean isRLE
boolean isDeflate
boolean oddLocations
int maxPixelValue
int imagesPerFile
double rescaleSlope
double rescaleIntercept
boolean inverted
String pixelSizeX
String pixelSizeY
Double pixelSizeZ
String date
String time
String imageType
String originalDate
String originalTime
String originalInstance
int originalSeries
int start
boolean binary
boolean isTiff
IFDList ifds
long pixelOffset
net.imglib2.display.ColorTable8 cachedTable
boolean interlace
int ix
int iy
int iw
int ih
int blockSize
int dispose
int lastDispose
boolean transparency
int transIndex
boolean versionTwo
long offset
boolean hasInstrumentData
boolean storedRGB
String icsId
String idsId
Map<K,V> keyValPairs
org.scijava.io.location.Location icsLocation
org.scijava.io.location.Location idsLocation
long pixelsOffset
JPEG2000Format.Index lastIndex
Integer resolutionLevels
JPEGTileDecoder decoder
long width
long height
IFDList ifds
IFDList thumbnailIFDs
List<E> subResolutionIFDs
ifds.TiffParser tiffParser
boolean equalStrips
boolean use64Bit
long lastPlane
boolean noSubresolutions
Integer resolutionLevels
JPEG2000CodecOptions j2kCodecOptions
io.scif.formats.MNGFormat.MNGDatasetInfo datasetInfo
boolean isJNG
org.scijava.io.location.Location dataFile
String encoding
long offset
Reader helper
String[] pixelSizes
boolean lookForCompanion
boolean initializeHelper
long offset
int bytesPerLine
int nColorPlanes
net.imglib2.display.ColorTable8 lut
boolean rawBits
long offset
int patientIndex
int scannerId
LocalDate creationDate
int width
int height
int slices
int physicalWidth
int physicalHeight
int physicalDepth
int sliceThickness
int sliceSpacing
int firstSlicePosition
int minDataValue
int maxDataValue
int muScaling
int samples
int projections
int scanDistance
int scannerType
int samplingTime
int measurementIndex
int site
int referenceLine
int reconstructionAlgorithm
String patientName
int energy
int intensity
int dataOffset
double voxelWidth
double voxelHeight
double voxelDepth
int sliceBytes
short height
short width
short slices
NB in theory the format supports 3D files, but they are are exceedingly rare. However slice number is still often used in metadata. People take individual images of the same object, and mark down slice info as if they were in the same stack.
double sliceStart
double sliceDistance
String patientName
int patientNumber
int patientAge
short patientMeasurementNumber
Date patientBirthDate
String patientId
Date measurementDate
String measurementInfo
double resolution
short topEdge
short leftEdge
String deviceName
double objectSize
String[] axes
long[] lengths
double[] scales
String[] units
int planarDims
int interleavedDims
int thumbSizeX
int thumbSizeY
String pixelType
boolean indexed
boolean falseColor
boolean little
boolean metadataComplete
boolean thumbnail
boolean orderCertain
int lutLength
int scaleFactor
int images
net.imglib2.display.ColorTable[][] luts
int[][] valueToIndex
boolean populateImageMetadata
String creationDate
String experimenterFirstName
String experimenterLastName
String experimenterEmail
String imageDescription
org.scijava.io.location.Location companionFile
String description
String calibrationUnit
Double timeIncrement
Integer xOrigin
Integer yOrigin
byte[][] lut
List<E> colorTable
org.scijava.util.ReflectedUniverse r
int numPages
QTJavaService qtJavaService
int[] times
Image image
long pixelOffset
long pixelBytes
int bitsPerPixel
int rawSize
List<E> offsets
byte[] prevPixels
long prevPlane
boolean canUsePrevious
String codec
String altCodec
int altPlanes
int scale
List<E> chunkSizes
boolean interlaced
boolean spork
boolean flip
int rowBytes
boolean versionOne
org.scijava.log.LogService log
long numer
long denom
org.scijava.Context context
org.scijava.log.LogService logService
FormatService formatService
InitializeService initializeService
GUIService guiService
Reader myReader
Writer myWriter
JPanel pane
ImageIcon icon
JLabel iconLabel
JPanel sliderPanel
JSlider nSlider
JLabel probeLabel
JMenuItem fileView
JMenuItem fileSave
String filename
BufferedImage[] images
boolean anim
int fps
boolean canCloseReader
StringBuffer sb
org.scijava.log.LogService logService
InitializeService initializeService
Reader reader
String loadId
String lastId
Thread loader
boolean loaderAlive
Runnable refresher
JLabel iconLabel
JLabel formatLabel
JLabel resLabel
JLabel zctLabel
JLabel typeLabel
ImageIcon icon
String iconText
String formatText
String resText
String npText
String typeText
String iconTip
String formatTip
String resTip
String zctTip
String typeTip
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