io.scif.formats

Class DICOMFormat.Metadata

java.lang.Object

org.scijava.AbstractContextual

org.scijava.plugin.AbstractRichPlugin

io.scif.AbstractSCIFIOPlugin

io.scif.AbstractHasFormat

io.scif.AbstractHasSource

io.scif.AbstractMetadata

io.scif.formats.DICOMFormat.Metadata

All Implemented Interfaces:

HasColorTable, HasFormat, HasMetaTable, HasSource, Metadata, SCIFIOPlugin, TypedMetadata, Serializable, Comparable<org.scijava.Prioritized>, org.scijava.Contextual, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.plugin.HasPluginInfo, org.scijava.plugin.RichPlugin, org.scijava.plugin.SciJavaPlugin, org.scijava.Prioritized, org.scijava.Versioned

Enclosing class:

DICOMFormat

public static class DICOMFormat.Metadata
extends AbstractMetadata
implements HasColorTable

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
Metadata()

Method Summary

Modifier and Type	Method and Description
void	close(boolean fileOnly) Closes the image source(s) associated with this component, with a toggle to determine if the component itself is reset.
net.imglib2.display.ColorTable	getColorTable(int imageIndex, long planeIndex)
List<org.scijava.io.location.BrowsableLocation>	getCompanionFiles()
String	getDate()
Map<Integer,List<org.scijava.io.location.BrowsableLocation>>	getFileList()
int	getImagesPerFile()
String	getImageType()
int	getMaxPixelValue()
long[]	getOffsets()
String	getOriginalDate()
String	getOriginalInstance()
int	getOriginalSeries()
String	getOriginalTime()
String	getPixelSizeX()
String	getPixelSizeY()
Double	getPixelSizeZ()
double	getRescaleIntercept()
double	getRescaleSlope()
String	getTime()
boolean	isDeflate()
boolean	isInverted()
boolean	isJP2K()
boolean	isJPEG()
boolean	isOddLocations()
boolean	isRLE()
void	populateImageMetadata() Generates format-agnostic image metadata structures based on this instance's format-specific metadata.
void	setCompanionFiles(List<org.scijava.io.location.BrowsableLocation> companionFiles)
void	setDate(String date)
void	setDeflate(boolean isDeflate)
void	setFileList(Map<Integer,List<org.scijava.io.location.BrowsableLocation>> fileList)
void	setImagesPerFile(int imagesPerFile)
void	setImageType(String imageType)
void	setInverted(boolean inverted)
void	setJP2K(boolean isJP2K)
void	setJPEG(boolean isJPEG)
void	setMaxPixelValue(int maxPixelValue)
void	setOddLocations(boolean oddLocations)
void	setOffsets(long[] offsets)
void	setOriginalDate(String originalDate)
void	setOriginalInstance(String originalInstance)
void	setOriginalSeries(int originalSeries)
void	setOriginalTime(String originalTime)
void	setPixelSizeX(String pixelSizeX)
void	setPixelSizeY(String pixelSizeY)
void	setPixelSizeZ(Double pixelSizeZ)
void	setRescaleIntercept(double rescaleIntercept)
void	setRescaleSlope(double rescaleSlope)
void	setRLE(boolean isRLE)
void	setTime(String time)

Methods inherited from class io.scif.AbstractMetadata

add, createImageMetadata, get, getAll, getDatasetName, getDatasetSize, getDestinationLocation, getImageCount, getSource, getSourceLocation, getTable, isFiltered, setDatasetName, setDestinationLocation, setFiltered, setSource, setSourceLocation, setTable

Methods inherited from class io.scif.AbstractHasSource

close

Methods inherited from class io.scif.AbstractHasFormat

asBrowsableLocation, asBrowsableLocation, getFormat, getFormatName

Methods inherited from class io.scif.AbstractSCIFIOPlugin

getVersion, log

Methods inherited from class org.scijava.plugin.AbstractRichPlugin

getInfo, getPriority, setInfo, setPriority, toString

Methods inherited from class org.scijava.AbstractContextual

context, getContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface io.scif.HasFormat

getFormat, getFormatName

Methods inherited from interface io.scif.SCIFIOPlugin

getVersion, log

Methods inherited from interface org.scijava.plugin.RichPlugin

getIdentifier

Methods inherited from interface org.scijava.Contextual

context, getContext, setContext

Methods inherited from interface org.scijava.Prioritized

compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.HasPluginInfo

getInfo, setInfo

Methods inherited from interface org.scijava.Locatable

getLocation

Methods inherited from interface io.scif.HasSource

close

Constructor Detail

Metadata

public Metadata()

Method Detail

getOffsets

public long[] getOffsets()

setOffsets

public void setOffsets(long[] offsets)

getRescaleSlope

public double getRescaleSlope()

setRescaleSlope

public void setRescaleSlope(double rescaleSlope)

getRescaleIntercept

public double getRescaleIntercept()

setRescaleIntercept

public void setRescaleIntercept(double rescaleIntercept)

getPixelSizeX

public String getPixelSizeX()

setPixelSizeX

public void setPixelSizeX(String pixelSizeX)

getPixelSizeY

public String getPixelSizeY()

setPixelSizeY

public void setPixelSizeY(String pixelSizeY)

getPixelSizeZ

public Double getPixelSizeZ()

setPixelSizeZ

public void setPixelSizeZ(Double pixelSizeZ)

isInverted

public boolean isInverted()

setInverted

public void setInverted(boolean inverted)

isJP2K

public boolean isJP2K()

setJP2K

public void setJP2K(boolean isJP2K)

isJPEG

public boolean isJPEG()

setJPEG

public void setJPEG(boolean isJPEG)

isRLE

public boolean isRLE()

setRLE

public void setRLE(boolean isRLE)

isDeflate

public boolean isDeflate()

setDeflate

public void setDeflate(boolean isDeflate)

isOddLocations

public boolean isOddLocations()

setOddLocations

public void setOddLocations(boolean oddLocations)

getMaxPixelValue

public int getMaxPixelValue()

setMaxPixelValue

public void setMaxPixelValue(int maxPixelValue)

getImagesPerFile

public int getImagesPerFile()

setImagesPerFile

public void setImagesPerFile(int imagesPerFile)

getFileList

public Map<Integer,List<org.scijava.io.location.BrowsableLocation>> getFileList()

setFileList

public void setFileList(Map<Integer,List<org.scijava.io.location.BrowsableLocation>> fileList)

getDate

public String getDate()

setDate

public void setDate(String date)

getTime

public String getTime()

setTime

public void setTime(String time)

getImageType

public String getImageType()

setImageType

public void setImageType(String imageType)

getOriginalDate

public String getOriginalDate()

setOriginalDate

public void setOriginalDate(String originalDate)

getOriginalTime

public String getOriginalTime()

setOriginalTime

public void setOriginalTime(String originalTime)

getOriginalInstance

public String getOriginalInstance()

setOriginalInstance

public void setOriginalInstance(String originalInstance)

getOriginalSeries

public int getOriginalSeries()

setOriginalSeries

public void setOriginalSeries(int originalSeries)

getCompanionFiles

public List<org.scijava.io.location.BrowsableLocation> getCompanionFiles()

setCompanionFiles

public void setCompanionFiles(List<org.scijava.io.location.BrowsableLocation> companionFiles)

getColorTable

public net.imglib2.display.ColorTable getColorTable(int imageIndex,
                                                    long planeIndex)

Specified by:

getColorTable in interface HasColorTable

Returns:

The ColorTable associated with this component.

populateImageMetadata

public void populateImageMetadata()

Description copied from interface: Metadata

Generates format-agnostic image metadata structures based on this instance's format-specific metadata.

Specified by:

populateImageMetadata in interface Metadata

close

public void close(boolean fileOnly)
           throws IOException

Description copied from interface: HasSource

Closes the image source(s) associated with this component, with a toggle to determine if the component itself is reset.

Specified by:

close in interface HasSource

Overrides:

close in class AbstractMetadata

Parameters:

fileOnly - - If true, only the associated source(s) are closed.

Throws:

IOException