io.scif.img.converters

Interface PlaneConverter

All Superinterfaces:

Comparable<org.scijava.Prioritized>, org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.plugin.RichPlugin, SCIFIOPlugin, org.scijava.plugin.SciJavaPlugin, org.scijava.plugin.SingletonPlugin, org.scijava.Versioned

All Known Implementing Classes:

AbstractPlaneConverter, ArrayDataAccessConverter, PlanarAccessConverter, RandomAccessConverter

public interface PlaneConverter
extends SCIFIOPlugin, org.scijava.plugin.SingletonPlugin

Interface for using planes read by SCIFIO Readers to populate ImgPlus instances.

Author:

Mark Hiner

Method Summary

Modifier and Type	Method and Description
<T extends net.imglib2.type.numeric.RealType<T>> void	populatePlane(Reader reader, int imageIndex, int planeIndex, byte[] source, net.imagej.ImgPlus<T> dest, SCIFIOConfig config)

Methods inherited from interface io.scif.SCIFIOPlugin

getVersion, log

Methods inherited from interface org.scijava.plugin.RichPlugin

getIdentifier

Methods inherited from interface org.scijava.Contextual

context, getContext, setContext

Methods inherited from interface org.scijava.Prioritized

compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.HasPluginInfo

getInfo, setInfo

Methods inherited from interface org.scijava.Locatable

getLocation

Method Detail

populatePlane

<T extends net.imglib2.type.numeric.RealType<T>> void populatePlane(Reader reader,
                                                                    int imageIndex,
                                                                    int planeIndex,
                                                                    byte[] source,
                                                                    net.imagej.ImgPlus<T> dest,
                                                                    SCIFIOConfig config)

Parameters:

reader - Reader that was used to open the source plane

imageIndex - image index within the dataset

planeIndex - plane index within the image

source - the opened plane

dest - the ImgPlus to populate

config - SCIFIOConfig for opening this plane