io.scif.formats

Class TIFFFormat.Metadata

java.lang.Object

org.scijava.AbstractContextual

org.scijava.plugin.AbstractRichPlugin

io.scif.AbstractSCIFIOPlugin

io.scif.AbstractHasFormat

io.scif.AbstractHasSource

io.scif.AbstractMetadata

io.scif.formats.MinimalTIFFFormat.Metadata

io.scif.formats.TIFFFormat.Metadata

All Implemented Interfaces:

HasColorTable, HasFormat, HasMetaTable, HasSource, Metadata, SCIFIOPlugin, TypedMetadata, Serializable, Comparable<org.scijava.Prioritized>, org.scijava.Contextual, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.plugin.HasPluginInfo, org.scijava.plugin.RichPlugin, org.scijava.plugin.SciJavaPlugin, org.scijava.Prioritized, org.scijava.Versioned

Enclosing class:

TIFFFormat

public static class TIFFFormat.Metadata
extends MinimalTIFFFormat.Metadata

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
Metadata()

Method Summary

Modifier and Type	Method and Description
void	close(boolean fileOnly) Closes the image source(s) associated with this component, with a toggle to determine if the component itself is reset.
void	createImageMetadata(int imageCount) Creates the specified number of blank ImageMetadata.
String	getCalibrationUnit()
net.imglib2.display.ColorTable	getColorTable(int imageIndex, long planeIndex)
org.scijava.io.location.Location	getCompanionFile()
String	getCreationDate()
String	getDescription()
String	getExperimenterEmail()
String	getExperimenterFirstName()
String	getExperimenterLastName()
String	getImageDescription()
byte[][]	getLut()
Double	getTimeIncrement()
Integer	getxOrigin()
Integer	getyOrigin()
void	populateImageMetadata() Generates format-agnostic image metadata structures based on this instance's format-specific metadata.
void	setCalibrationUnit(String calibrationUnit)
void	setCompanionFile(org.scijava.io.location.Location companionFile)
void	setCreationDate(String creationDate)
void	setDescription(String description)
void	setExperimenterEmail(String experimenterEmail)
void	setExperimenterFirstName(String experimenterFirstName)
void	setExperimenterLastName(String experimenterLastName)
void	setImageDescription(String imageDescription)
void	setLut(byte[][] lut)
void	setTimeIncrement(Double timeIncrement)
void	setxOrigin(Integer xOrigin)
void	setyOrigin(Integer yOrigin)

Methods inherited from class io.scif.formats.MinimalTIFFFormat.Metadata

getIfds, getJ2kCodecOptions, getLastPlane, getResolutionLevels, getSubResolutionIFDs, getThumbnailIFDs, getTiffParser, isEqualStrips, isNoSubresolutions, isUse64Bit, setEqualStrips, setIfds, setJ2kCodecOptions, setLastPlane, setNoSubresolutions, setResolutionLevels, setSubResolutionIFDs, setThumbnailIFDs, setTiffParser, setUse64Bit

Methods inherited from class io.scif.AbstractMetadata

add, get, getAll, getDatasetName, getDatasetSize, getDestinationLocation, getImageCount, getSource, getSourceLocation, getTable, isFiltered, setDatasetName, setDestinationLocation, setFiltered, setSource, setSourceLocation, setTable

Methods inherited from class io.scif.AbstractHasSource

close

Methods inherited from class io.scif.AbstractHasFormat

asBrowsableLocation, asBrowsableLocation, getFormat, getFormatName

Methods inherited from class io.scif.AbstractSCIFIOPlugin

getVersion, log

Methods inherited from class org.scijava.plugin.AbstractRichPlugin

getInfo, getPriority, setInfo, setPriority, toString

Methods inherited from class org.scijava.AbstractContextual

context, getContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface io.scif.HasFormat

getFormat, getFormatName

Methods inherited from interface io.scif.SCIFIOPlugin

getVersion, log

Methods inherited from interface org.scijava.plugin.RichPlugin

getIdentifier

Methods inherited from interface org.scijava.Contextual

context, getContext, setContext

Methods inherited from interface org.scijava.Prioritized

compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.HasPluginInfo

getInfo, setInfo

Methods inherited from interface org.scijava.Locatable

getLocation

Methods inherited from interface io.scif.HasSource

close

Constructor Detail

Metadata

public Metadata()

Method Detail

getCompanionFile

public org.scijava.io.location.Location getCompanionFile()

setCompanionFile

public void setCompanionFile(org.scijava.io.location.Location companionFile)

getDescription

public String getDescription()

setDescription

public void setDescription(String description)

getCalibrationUnit

public String getCalibrationUnit()

setCalibrationUnit

public void setCalibrationUnit(String calibrationUnit)

getTimeIncrement

public Double getTimeIncrement()

setTimeIncrement

public void setTimeIncrement(Double timeIncrement)

getxOrigin

public Integer getxOrigin()

setxOrigin

public void setxOrigin(Integer xOrigin)

getyOrigin

public Integer getyOrigin()

setyOrigin

public void setyOrigin(Integer yOrigin)

getCreationDate

public String getCreationDate()

setCreationDate

public void setCreationDate(String creationDate)

getExperimenterFirstName

public String getExperimenterFirstName()

getLut

public byte[][] getLut()

setLut

public void setLut(byte[][] lut)

setExperimenterFirstName

public void setExperimenterFirstName(String experimenterFirstName)

getExperimenterLastName

public String getExperimenterLastName()

setExperimenterLastName

public void setExperimenterLastName(String experimenterLastName)

getExperimenterEmail

public String getExperimenterEmail()

setExperimenterEmail

public void setExperimenterEmail(String experimenterEmail)

getImageDescription

public String getImageDescription()

setImageDescription

public void setImageDescription(String imageDescription)

getColorTable

public net.imglib2.display.ColorTable getColorTable(int imageIndex,
                                                    long planeIndex)

Specified by:

getColorTable in interface HasColorTable

Overrides:

getColorTable in class MinimalTIFFFormat.Metadata

Returns:

The ColorTable associated with this component.

createImageMetadata

public void createImageMetadata(int imageCount)

Description copied from interface: Metadata

Creates the specified number of blank ImageMetadata.

Specified by:

createImageMetadata in interface Metadata

Overrides:

createImageMetadata in class AbstractMetadata

Parameters:

imageCount - - Number of ImageMetadata to create.

populateImageMetadata

public void populateImageMetadata()

Description copied from interface: Metadata

Generates format-agnostic image metadata structures based on this instance's format-specific metadata.

Specified by:

populateImageMetadata in interface Metadata

Overrides:

populateImageMetadata in class MinimalTIFFFormat.Metadata

close

public void close(boolean fileOnly)
           throws IOException

Description copied from interface: HasSource

Closes the image source(s) associated with this component, with a toggle to determine if the component itself is reset.

Specified by:

close in interface HasSource

Overrides:

close in class MinimalTIFFFormat.Metadata

Parameters:

fileOnly - - If true, only the associated source(s) are closed.

Throws:

IOException