Format implementations for all file formats that are
supported by default in SCIFIO.See: Description
| Class | Description |
|---|---|
| APNGFormat | |
| APNGFormat.ACTLChunk |
Represents the acTL chunk of the APNG image format.
|
| APNGFormat.APNGChunk |
A parent class for all APNG Chunk classes.
|
| APNGFormat.APNGTranslator |
This class can be used for translating any io.scif.Metadata to Metadata for
writing Animated Portable Network Graphics (APNG) files.
|
| APNGFormat.Checker |
File format SCIFIO Checker for Animated Portable Network Graphics (APNG)
images.
|
| APNGFormat.FCTLChunk |
Represents the fcTL chunk of the APNG image format.
|
| APNGFormat.FDATChunk |
Represents the fdAT chunk of the APNG image format.
|
| APNGFormat.IDATChunk |
Represents the IDAT chunk of the APNG image format.
|
| APNGFormat.IENDChunk |
This class represents the critical IEND chunk that signifies the end of a
PNG stream.
|
| APNGFormat.IHDRChunk |
Represents the IHDR chunk of the APNG image format.
|
| APNGFormat.Metadata |
File format SCIFIO Metadata for Animated Portable Network Graphics (APNG)
images.
|
| APNGFormat.Parser |
File format SCIFIO Parser for Animated Portable Network Graphics (APNG)
images.
|
| APNGFormat.PLTEChunk |
Represents the PLTE chunk of the APNG image format.
|
| APNGFormat.Reader |
File format SCIFIO Reader for Animated Portable Network Graphics (APNG)
images.
|
| APNGFormat.Writer |
The SCIFIO file format writer for PNG and APNG files.
|
| AVIFormat |
AVIReader is the file format reader for AVI files.
|
| AVIFormat.Checker | |
| AVIFormat.Metadata | |
| AVIFormat.Parser | |
| AVIFormat.Reader | |
| AVIFormat.Translator | |
| AVIFormat.Writer | |
| BMPFormat |
BMPReader is the file format reader for
Microsoft Bitmap
(BMP) files.
|
| BMPFormat.Checker | |
| BMPFormat.Metadata | |
| BMPFormat.Parser | |
| BMPFormat.Reader | |
| DICOMFormat |
DICOMReader is the file format reader for DICOM files.
|
| DICOMFormat.Checker | |
| DICOMFormat.DICOMTag | |
| DICOMFormat.Metadata | |
| DICOMFormat.Parser | |
| DICOMFormat.Reader | |
| EPSFormat |
Reader is the file format reader for Encapsulated PostScript (EPS) files.
|
| EPSFormat.EPSTranslator |
Necessary dummy translator, so that an EPS-OMEXML translator can be used.
|
| EPSFormat.Metadata | |
| EPSFormat.Parser | |
| EPSFormat.Reader | |
| EPSFormat.Writer | |
| FITSFormat |
FitsReader is the file format reader for Flexible Image Transport System
(FITS) images.
|
| FITSFormat.Metadata | |
| FITSFormat.Parser | |
| FITSFormat.Reader | |
| GIFFormat |
Handler for the GIF file format.
|
| GIFFormat.Checker | |
| GIFFormat.Metadata | |
| GIFFormat.Parser | |
| GIFFormat.Reader | |
| ICSFormat |
SCIFIO Format supporting the
ICS image
format.
|
| ICSFormat.ICSTranslator |
SCIFIO file format Translator for ICS Metadata objects to the SCIFIO Core
metadata type.
|
| ICSFormat.ICSUtils |
Collection of utility methods and constants for working with ICS images.
|
| ICSFormat.Metadata |
SCIFIO Metadata object for ICS images.
|
| ICSFormat.Parser |
SCIFIO file format Parser for ICS images.
|
| ICSFormat.Reader |
File format SCIFIO Reader for Image Cytometry Standard (ICS) images.
|
| ICSFormat.Writer |
SCIFIO file format writer for ICS version 1 and 2 files.
|
| ImageIOFormat |
ImageIOReader is the superclass for file format readers that use the
javax.imageio package.
|
| ImageIOFormat.ImageIOTranslator | |
| ImageIOFormat.Metadata | |
| ImageIOFormat.Parser<M extends ImageIOFormat.Metadata> | |
| ImageIOFormat.Reader<M extends ImageIOFormat.Metadata> | |
| ImageIOFormat.Writer<M extends ImageIOFormat.Metadata> | |
| JPEG2000Format |
JPEG2000Reader is the file format reader for JPEG-2000 images.
|
| JPEG2000Format.Checker | |
| JPEG2000Format.Index | |
| JPEG2000Format.Metadata | |
| JPEG2000Format.Parser | |
| JPEG2000Format.Reader | |
| JPEG2000Format.Writer | |
| JPEGFormat |
JPEGReader is the file format reader for JPEG images.
|
| JPEGFormat.Checker | |
| JPEGFormat.Metadata | |
| JPEGFormat.Parser | |
| JPEGFormat.Reader | |
| JPEGFormat.Writer | |
| JPEGTileFormat |
Reader for decoding JPEG images using java.awt.Toolkit.
|
| JPEGTileFormat.Metadata | |
| JPEGTileFormat.Parser | |
| JPEGTileFormat.Reader | |
| KontronFormat |
The file format reader for Kontron IMG files
Kontron IMG files are generated by a Kontron controller computer attached to
Alan Boyde's Zeiss DSM 962 scanning electron microscope.
|
| KontronFormat.Checker | |
| KontronFormat.Metadata | |
| KontronFormat.Parser | |
| KontronFormat.Reader | |
| MicromanagerFormat |
MicromanagerReader is the file format reader for Micro-Manager files.
|
| MicromanagerFormat.Checker | |
| MicromanagerFormat.Metadata | |
| MicromanagerFormat.MicromanagerTranslator |
Necessary dummy translator, so that a Micromanager-OMEXML translator can be
used
|
| MicromanagerFormat.Parser | |
| MicromanagerFormat.Position | |
| MicromanagerFormat.Reader | |
| MinimalTIFFFormat |
MinimalTiffReader is the superclass for file format readers compatible with
or derived from the TIFF 6.0 file format.
|
| MinimalTIFFFormat.Checker | |
| MinimalTIFFFormat.Metadata | |
| MinimalTIFFFormat.Parser<M extends MinimalTIFFFormat.Metadata> | |
| MinimalTIFFFormat.Reader<M extends MinimalTIFFFormat.Metadata> | |
| MNGFormat |
A handler for the Multiple-image Network Graphics (MNG) file format.
|
| MNGFormat.Checker | |
| MNGFormat.Metadata | |
| MNGFormat.Parser | |
| MNGFormat.Reader | |
| NRRDFormat |
File format reader for NRRD files; see http://teem.sourceforge.net/nrrd.
|
| NRRDFormat.Checker | |
| NRRDFormat.Metadata | |
| NRRDFormat.Parser | |
| NRRDFormat.Reader | |
| PCXFormat |
PCXReader is the file format reader for PCX files (originally used by PC
Paintbrush; now used in Zeiss' LSM Image Browser).
|
| PCXFormat.Checker | |
| PCXFormat.Metadata | |
| PCXFormat.Parser | |
| PCXFormat.Reader | |
| PGMFormat |
Handler plugin for the PGM file format.
|
| PGMFormat.Checker | |
| PGMFormat.Metadata | |
| PGMFormat.Parser | |
| PGMFormat.Reader | |
| ScancoISQFormat |
The file format reader for Scanco ISQ files
ISQ images are generated by Scanco X-ray microtomography scanners
Scanco ISQ Header Information:
Scanco uses OpenVMS on Alpha workstations
Little endian byte order (the least significant bit occupies the lowest
memory position)
BYTE
00 char check[16]; // CTDATA-HEADER_V1
16 int data_type;
20 int nr_of_bytes;
24 int nr_of_blocks;
28 int patient_index;
32 int scanner_id;
36 int creation_date[2];
44 int dimx_p;
48 int dimy_p;
52 int dimz_p;
56 int dimx_µm;
60 int dimy_µm;
64 int dimz_µm;
68 int slice_thickness_µm;
72 int slice_increment_µm;
76 int slice_1_pos_µm;
80 int min_data_value;
84 int max_data_value;
88 int mu_scaling;
92 int nr_of_samples;
96 int nr_of_projections;
100 int scandist_µm;
104 int scanner_type;
108 int sampletime_µs;
112 int index_measurement;
116 int site;
120 int reference_line_µm;
124 int recon_alg;
128 char name[40];
168 int energy; // V
172 int intensity; // µA
...
508 int data_offset; // Number of optional header blocks
|
| ScancoISQFormat.Checker | |
| ScancoISQFormat.Metadata | |
| ScancoISQFormat.Parser | |
| ScancoISQFormat.Reader | |
| StratecPQCTFormat |
The file format reader for Stratec pQCT files.
|
| StratecPQCTFormat.Checker | |
| StratecPQCTFormat.Metadata | |
| StratecPQCTFormat.Parser | |
| StratecPQCTFormat.Reader | |
| TestImgFormat |
TestImgFormat is the file format reader for creatign test input data.
|
| TestImgFormat.Checker | |
| TestImgFormat.Metadata |
Metadata class for Fake format.
|
| TestImgFormat.Parser |
Parser for Fake file format.
|
| TestImgFormat.Reader |
Reader for the Fake file format.
|
| TestImgFormat.TestImgTranslator |
Translator from
Metadata to TestImgFormat$Metadata . |
| TestImgFormat.TestImgUtils |
Helper methods for the test img file format.
|
| TIFFFormat |
Handler for the TIFF file format.
|
| TIFFFormat.BaseTIFFParser |
BaseTiffParser is the superclass for file format readers compatible with or
derived from the TIFF 6.0 file format.
|
| TIFFFormat.Metadata | |
| TIFFFormat.Parser | |
| TIFFFormat.Reader<M extends TIFFFormat.Metadata> |
TiffReader is the file format reader for regular TIFF files, not of any
specific TIFF variant.
|
| TIFFFormat.TIFFTranslator |
This class can be used for translating any io.scif.Metadata to Metadata for
writing TIFF. files.
|
| TIFFFormat.Writer<M extends TIFFFormat.Metadata> |
TiffWriter is the file format writer for TIFF files.
|
| TIFFJAIFormat |
TiffJAIReader is a file format reader for TIFF images.
|
| TIFFJAIFormat.Metadata | |
| TIFFJAIFormat.Parser | |
| TIFFJAIFormat.Reader |
Format implementations for all file formats that are
supported by default in SCIFIO.
The set of default formats are all open formats that can be freely read and written, to facilitate the inclusion of SCIFIO as an image IO library in external projects.
Format as nested
classes.FormatCopyright © 2011–2026 SCIFIO. All rights reserved.