io.scif.formats

Class ICSFormat

java.lang.Object

org.scijava.AbstractContextual

org.scijava.plugin.AbstractRichPlugin

io.scif.AbstractSCIFIOPlugin

io.scif.AbstractFormat

io.scif.formats.ICSFormat

All Implemented Interfaces:

Format, SCIFIOPlugin, Comparable<org.scijava.Prioritized>, org.scijava.Contextual, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.plugin.HasPluginInfo, org.scijava.plugin.RichPlugin, org.scijava.plugin.SciJavaPlugin, org.scijava.Prioritized, org.scijava.Versioned

public class ICSFormat
extends AbstractFormat

SCIFIO Format supporting the ICS image format.

Author:

Mark Hiner

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ICSFormat.ICSTranslator SCIFIO file format Translator for ICS Metadata objects to the SCIFIO Core metadata type.
static class	ICSFormat.ICSUtils Collection of utility methods and constants for working with ICS images.
static class	ICSFormat.Metadata SCIFIO Metadata object for ICS images.
static class	ICSFormat.Parser SCIFIO file format Parser for ICS images.
static class	ICSFormat.Reader File format SCIFIO Reader for Image Cytometry Standard (ICS) images.
static class	ICSFormat.Writer SCIFIO file format writer for ICS version 1 and 2 files.

Constructor Summary

Constructors

Constructor and Description
ICSFormat()

Method Summary

Modifier and Type	Method and Description
protected String[]	makeSuffixArray() Helper method to cache the suffix array for a format.

Methods inherited from class io.scif.AbstractFormat

createChecker, createMetadata, createParser, createReader, createWriter, getCheckerClass, getFormatName, getMetadataClass, getParserClass, getReaderClass, getSuffixes, getWriterClass, isEnabled, setEnabled

Methods inherited from class io.scif.AbstractSCIFIOPlugin

getVersion, log

Methods inherited from class org.scijava.plugin.AbstractRichPlugin

getInfo, getPriority, setInfo, setPriority, toString

Methods inherited from class org.scijava.AbstractContextual

context, getContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface io.scif.Format

ownsLocationType

Methods inherited from interface io.scif.SCIFIOPlugin

getVersion, log

Methods inherited from interface org.scijava.plugin.RichPlugin

getIdentifier

Methods inherited from interface org.scijava.Contextual

context, getContext, setContext

Methods inherited from interface org.scijava.Prioritized

compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.HasPluginInfo

getInfo, setInfo

Methods inherited from interface org.scijava.Locatable

getLocation

Constructor Detail

ICSFormat

public ICSFormat()

Method Detail

makeSuffixArray

protected String[] makeSuffixArray()

Description copied from class: AbstractFormat

Helper method to cache the suffix array for a format. Concrete format classes should implement this method, returning an array of supported suffixes.

Specified by:

makeSuffixArray in class AbstractFormat

Returns:

Valid suffixes for this file format.