| Package | Description |
|---|---|
| io.scif |
Provides the interfaces and default implementations for the components of
SCIFIO, and the context for instantiating these components.
|
| io.scif.filters |
Provides wrapping classes for modifying the performance of one or more of a
{link io.scif.Format}'s components.
|
| io.scif.formats |
Provides
Format implementations for all file formats that are
supported by default in SCIFIO. |
| io.scif.formats.qt | |
| io.scif.gui |
Provides classes for working with
BufferedImage in
SCIFIO. |
| io.scif.img |
Provides SCIFIO-based classes for working with
ImgPlus
from the imglib2 library. |
| io.scif.util |
Provides utility classes for common operations on or by SCIFIO components.
|
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractImageMetadata
Abstract superclass of all
ImageMetadata implementations. |
class |
DefaultImageMetadata
Default implementation of
ImageMetadata. |
| Modifier and Type | Method and Description |
|---|---|
ImageMetadata |
DefaultImageMetadata.copy() |
ImageMetadata |
ImageMetadata.copy() |
ImageMetadata |
Metadata.get(int imageIndex)
Returns the ImageMetadata at the specified image within this dataset.
|
ImageMetadata |
AbstractMetadata.get(int imageIndex) |
ImageMetadata |
AbstractPlane.getImageMetadata() |
ImageMetadata |
Plane.getImageMetadata()
Gets the
ImageMetadata associated with this plane. |
| Modifier and Type | Method and Description |
|---|---|
List<ImageMetadata> |
Metadata.getAll()
Returns the list of ImageMetadata associated with this dataset.
|
List<ImageMetadata> |
AbstractMetadata.getAll() |
| Modifier and Type | Method and Description |
|---|---|
void |
Metadata.add(ImageMetadata meta)
Adds the provided image metadata to this dataset metadata
|
void |
AbstractMetadata.add(ImageMetadata meta) |
void |
AbstractImageMetadata.copy(ImageMetadata toCopy) |
void |
ImageMetadata.copy(ImageMetadata toCopy)
Populates this ImageMetadata using the provided instance.
|
ByteArrayPlane |
ByteArrayReader.createPlane(ImageMetadata meta,
net.imglib2.Interval bounds) |
Plane |
Reader.createPlane(ImageMetadata meta,
net.imglib2.Interval bounds)
Creates a blank plane compatible with this reader.
|
P |
AbstractPlane.populate(ImageMetadata meta,
net.imglib2.Interval bounds) |
Plane |
Plane.populate(ImageMetadata meta,
net.imglib2.Interval bounds)
Populates this planes offsets, dimensions and Metadata.
|
P |
AbstractPlane.populate(ImageMetadata meta,
T data,
net.imglib2.Interval bounds) |
DataPlane<T> |
DataPlane.populate(ImageMetadata meta,
T data,
net.imglib2.Interval bounds)
As
DataPlane.populate(Object, Interval), but also sets the ImageMetadata of
the source from which this Plane was read. |
void |
AbstractPlane.setImageMetadata(ImageMetadata meta) |
void |
Plane.setImageMetadata(ImageMetadata meta)
Sets the ImageMetadata representation of the underlying image.
|
| Modifier and Type | Method and Description |
|---|---|
void |
Translator.translate(Metadata source,
List<ImageMetadata> sourceImgMeta,
Metadata destination)
As
Translator.translate(Metadata, Metadata) with the format-specific and
image metadata explicitly split out. |
void |
AbstractTranslator.translate(Metadata source,
List<ImageMetadata> sourceImgMeta,
Metadata dest) |
protected void |
DefaultTranslator.translateImageMetadata(List<ImageMetadata> source,
Metadata dest) |
protected abstract void |
AbstractTranslator.translateImageMetadata(List<ImageMetadata> source,
N dest)
Use format-agnostic metadata (
ImageMetadata to populate the
destination's format-specific metadata. |
protected void |
AbstractTranslator.typedTranslate(M typedSource,
List<ImageMetadata> sourceImgMeta,
N typedDest)
This method provides a hook for subclasses that need access to both the
Metadata and ImageMetadata. |
| Constructor and Description |
|---|
AbstractImageMetadata(ImageMetadata copy) |
AbstractPlane(ImageMetadata meta,
net.imglib2.Interval bounds) |
BufferedImagePlane(ImageMetadata meta,
net.imglib2.Interval bounds) |
ByteArrayPlane(ImageMetadata meta,
net.imglib2.Interval bounds) |
DefaultImageMetadata(ImageMetadata copy) |
| Constructor and Description |
|---|
AbstractMetadata(List<ImageMetadata> list) |
DefaultMetadata(List<ImageMetadata> list) |
| Modifier and Type | Method and Description |
|---|---|
ImageMetadata |
FileStitcherMetadata.get(int imageIndex) |
| Modifier and Type | Method and Description |
|---|---|
void |
AbstractMetadataWrapper.add(ImageMetadata meta) |
void |
MetadataWrapper.add(ImageMetadata meta,
boolean passUp) |
void |
AbstractMetadataWrapper.add(ImageMetadata meta,
boolean passUp) |
Plane |
AbstractReaderFilter.createPlane(ImageMetadata meta,
net.imglib2.Interval bounds) |
void |
FileStitcherMetadata.setImgMeta(ImageMetadata imgMeta) |
| Modifier and Type | Method and Description |
|---|---|
void |
APNGFormat.APNGTranslator.translateImageMetadata(List<ImageMetadata> source,
APNGFormat.Metadata dest) |
protected void |
AVIFormat.Translator.translateImageMetadata(List<ImageMetadata> source,
AVIFormat.Metadata dest) |
void |
ICSFormat.ICSTranslator.translateImageMetadata(List<ImageMetadata> source,
ICSFormat.Metadata dest) |
protected void |
ImageIOFormat.ImageIOTranslator.translateImageMetadata(List<ImageMetadata> source,
ImageIOFormat.Metadata dest) |
void |
TestImgFormat.TestImgTranslator.translateImageMetadata(List<ImageMetadata> source,
TestImgFormat.Metadata dest) |
void |
TIFFFormat.TIFFTranslator.translateImageMetadata(List<ImageMetadata> source,
TIFFFormat.Metadata dest) |
| Modifier and Type | Method and Description |
|---|---|
void |
LegacyQTFormat.LegacyQTTranslator.translateImageMetadata(List<ImageMetadata> source,
LegacyQTFormat.Metadata dest) |
void |
NativeQTFormat.NativeQTTranslator.translateImageMetadata(List<ImageMetadata> source,
NativeQTFormat.Metadata dest) |
| Modifier and Type | Method and Description |
|---|---|
static BufferedImage |
AWTImageTools.blankImage(ImageMetadata meta,
long[] axes,
int type)
Creates a blank image with the given dimensions and transfer type.
|
BufferedImagePlane |
BufferedImageReader.createPlane(ImageMetadata meta,
net.imglib2.Interval bounds) |
| Constructor and Description |
|---|
XYCTuple(ImageMetadata meta,
long[] axisLengths) |
| Modifier and Type | Method and Description |
|---|---|
ImageMetadata |
SCIFIOImgPlus.getImageMetadata() |
| Modifier and Type | Method and Description |
|---|---|
void |
SCIFIOImgPlus.setImageMetadata(ImageMetadata imageMeta)
Sets the
ImageMetadata object for this ImgPlus. |
| Modifier and Type | Method and Description |
|---|---|
static long[] |
FormatTools.defaultMinMax(ImageMetadata iMeta)
Helper method to get the default range for the specified
ImageMetadata. |
static double |
FormatTools.getScale(ImageMetadata imageMeta,
net.imagej.axis.AxisType axisType)
Gets the average scale over the specified axis of the given image metadata.
|
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