Uses of Interface
io.scif.Format

Packages that use Format

Package	Description
io.scif	Provides the interfaces and default implementations for the components of SCIFIO, and the context for instantiating these components.
io.scif.filters	Provides wrapping classes for modifying the performance of one or more of a {link io.scif.Format}'s components.
io.scif.formats	Provides Format implementations for all file formats that are supported by default in SCIFIO.
io.scif.formats.qt
io.scif.gui	Provides classes for working with BufferedImage in SCIFIO.
io.scif.services	Provides a set of Services (singletons within a given context) for working with SCIFIO objects.

Uses of Format in io.scif

Classes in io.scif that implement Format

Modifier and Type	Class and Description
class	AbstractFormat Abstract superclass of all SCIFIO Format implementations.

Methods in io.scif that return Format

Modifier and Type	Method and Description
Format	DefaultParser.getFormat()
Format	DefaultMetadata.getFormat()
Format	DefaultReader.getFormat()
Format	DefaultChecker.getFormat()
Format	AbstractHasFormat.getFormat()
Format	DefaultWriter.getFormat()
Format	HasFormat.getFormat() Provides a link back to the format associated with this component.

Uses of Format in io.scif.filters

Methods in io.scif.filters that return Format

Modifier and Type	Method and Description
Format	AbstractReaderFilter.getFormat()
Format	AbstractMetadataWrapper.getFormat()

Uses of Format in io.scif.formats

Classes in io.scif.formats that implement Format

Modifier and Type	Class and Description
class	APNGFormat SCIFIO Format supporting the PNG and APNG image formats.
class	AVIFormat AVIReader is the file format reader for AVI files.
class	BMPFormat BMPReader is the file format reader for Microsoft Bitmap (BMP) files.
class	DICOMFormat DICOMReader is the file format reader for DICOM files.
class	EPSFormat Reader is the file format reader for Encapsulated PostScript (EPS) files.
class	FITSFormat FitsReader is the file format reader for Flexible Image Transport System (FITS) images.
class	GIFFormat Handler for the GIF file format.
class	ICSFormat SCIFIO Format supporting the ICS image format.
class	ImageIOFormat ImageIOReader is the superclass for file format readers that use the javax.imageio package.
class	JPEG2000Format JPEG2000Reader is the file format reader for JPEG-2000 images.
class	JPEGFormat JPEGReader is the file format reader for JPEG images.
class	JPEGTileFormat Reader for decoding JPEG images using java.awt.Toolkit.
class	KontronFormat The file format reader for Kontron IMG files Kontron IMG files are generated by a Kontron controller computer attached to Alan Boyde's Zeiss DSM 962 scanning electron microscope.
class	MicromanagerFormat MicromanagerReader is the file format reader for Micro-Manager files.
class	MinimalTIFFFormat MinimalTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.
class	MNGFormat A handler for the Multiple-image Network Graphics (MNG) file format.
class	NRRDFormat File format reader for NRRD files; see http://teem.sourceforge.net/nrrd.
class	PCXFormat PCXReader is the file format reader for PCX files (originally used by PC Paintbrush; now used in Zeiss' LSM Image Browser).
class	PGMFormat Handler plugin for the PGM file format.
class	ScancoISQFormat The file format reader for Scanco ISQ files ISQ images are generated by Scanco X-ray microtomography scanners Scanco ISQ Header Information: Scanco uses OpenVMS on Alpha workstations Little endian byte order (the least significant bit occupies the lowest memory position) BYTE 00 char check[16]; // CTDATA-HEADER_V1 16 int data_type; 20 int nr_of_bytes; 24 int nr_of_blocks; 28 int patient_index; 32 int scanner_id; 36 int creation_date[2]; 44 int dimx_p; 48 int dimy_p; 52 int dimz_p; 56 int dimx_µm; 60 int dimy_µm; 64 int dimz_µm; 68 int slice_thickness_µm; 72 int slice_increment_µm; 76 int slice_1_pos_µm; 80 int min_data_value; 84 int max_data_value; 88 int mu_scaling; 92 int nr_of_samples; 96 int nr_of_projections; 100 int scandist_µm; 104 int scanner_type; 108 int sampletime_µs; 112 int index_measurement; 116 int site; 120 int reference_line_µm; 124 int recon_alg; 128 char name[40]; 168 int energy; // V 172 int intensity; // µA ... 508 int data_offset; // Number of optional header blocks
class	StratecPQCTFormat The file format reader for Stratec pQCT files.
class	TestImgFormat TestImgFormat is the file format reader for creatign test input data.
class	TIFFFormat Handler for the TIFF file format.
class	TIFFJAIFormat TiffJAIReader is a file format reader for TIFF images.

Uses of Format in io.scif.formats.qt

Classes in io.scif.formats.qt that implement Format

Modifier and Type	Class and Description
class	LegacyQTFormat LegacyQTReader is a file format reader for QuickTime movie files.
class	NativeQTFormat NativeQTReader is the file format reader for QuickTime movie files.
class	PICTFormat PictReader is the file format reader for Apple PICT files.

Uses of Format in io.scif.gui

Methods in io.scif.gui that return Format

Modifier and Type	Method and Description
Format	FormatFileFilter.getFormat() Returns the filter's format.

Method parameters in io.scif.gui with type arguments of type Format

Modifier and Type	Method and Description
JFileChooser	GUIService.buildFileChooser(Collection<Format> formats) Constructs a file chooser for the given file format handler.
JFileChooser	DefaultGUIService.buildFileChooser(Collection<Format> formats)
JFileChooser	GUIService.buildFileChooser(Collection<Format> formats, boolean preview) Constructs a file chooser for the given file format handler.
JFileChooser	DefaultGUIService.buildFileChooser(Collection<Format> formats, boolean preview)
FileFilter[]	GUIService.buildFileFilters(Collection<Format> formats) Constructs a list of file filters for the given file format handler.
FileFilter[]	DefaultGUIService.buildFileFilters(Collection<Format> formats)

Constructors in io.scif.gui with parameters of type Format

Constructor and Description
FormatFileFilter(Format format) Constructs a new filter that accepts files of the given format's type.

Uses of Format in io.scif.services

Methods in io.scif.services with type parameters of type Format

Modifier and Type	Method and Description
<F extends Format> F	DefaultFormatService.getFormatFromClass(Class<F> formatClass)
<F extends Format> F	FormatService.getFormatFromClass(Class<F> formatClass) Lookup method for the Format map.

Methods in io.scif.services that return Format

Modifier and Type	Method and Description
Format	DefaultFormatService.getFormat(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> source)
Format	FormatService.getFormat(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> source) As FormatService.getFormat(Location) but takes an initialized DataHandle.
Format	DefaultFormatService.getFormat(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> source, SCIFIOConfig config)
Format	FormatService.getFormat(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> source, SCIFIOConfig config) As FormatService.getFormat(Location, SCIFIOConfig) but takes an initialized DataHandle.
Format	DefaultFormatService.getFormat(org.scijava.io.location.Location id)
Format	FormatService.getFormat(org.scijava.io.location.Location id) Returns the first Format known to be compatible with the source provided.
Format	DefaultFormatService.getFormat(org.scijava.io.location.Location id, SCIFIOConfig config)
Format	FormatService.getFormat(org.scijava.io.location.Location id, SCIFIOConfig config) Returns the first Format known to be compatible with the source provided.
<C extends Checker> Format	DefaultFormatService.getFormatFromChecker(Class<C> checkerClass)
<C extends Checker> Format	FormatService.getFormatFromChecker(Class<C> checkerClass) Format lookup method using the Checker component.
Format	DefaultFormatService.getFormatFromComponent(Class<?> componentClass)
Format	FormatService.getFormatFromComponent(Class<?> componentClass) Returns the Format compatible with this component class, or null if no matching Format can be found.
<M extends Metadata> Format	DefaultFormatService.getFormatFromMetadata(Class<M> metadataClass)
<M extends Metadata> Format	FormatService.getFormatFromMetadata(Class<M> metadataClass) Format lookup method using the Metadata component.
<P extends Parser> Format	DefaultFormatService.getFormatFromParser(Class<P> parserClass)
<P extends Parser> Format	FormatService.getFormatFromParser(Class<P> parserClass) Format lookup method using the Parser component.
<R extends Reader> Format	DefaultFormatService.getFormatFromReader(Class<R> readerClass)
<R extends Reader> Format	FormatService.getFormatFromReader(Class<R> readerClass) Format lookup method using the Reader component
<W extends Writer> Format	DefaultFormatService.getFormatFromWriter(Class<W> writerClass)
<W extends Writer> Format	FormatService.getFormatFromWriter(Class<W> writerClass) Format lookup method using the Writer component.

Methods in io.scif.services that return types with arguments of type Format

Modifier and Type	Method and Description
Set<Format>	DefaultFormatService.getAllFormats()
Set<Format>	FormatService.getAllFormats() Returns a list of all Formats within this context.
List<Format>	DefaultFormatService.getFormatList(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> source)
List<Format>	FormatService.getFormatList(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> source) As FormatService.getFormatList(Location) but takes an initialized DataHandle.
List<Format>	DefaultFormatService.getFormatList(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> source, SCIFIOConfig config, boolean greedy)
List<Format>	FormatService.getFormatList(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> source, SCIFIOConfig config, boolean greedy) As FormatService.getFormatList(Location, SCIFIOConfig, boolean) but takes an initialized DataHandle.
List<Format>	DefaultFormatService.getFormatList(org.scijava.io.location.Location id)
List<Format>	FormatService.getFormatList(org.scijava.io.location.Location id) Returns a list of all formats that are compatible with the source provided, ordered by their priority.
List<Format>	DefaultFormatService.getFormatList(org.scijava.io.location.Location id, SCIFIOConfig config, boolean greedy)
List<Format>	FormatService.getFormatList(org.scijava.io.location.Location id, SCIFIOConfig config, boolean greedy) Returns a list of all formats that are compatible with the source provided, ordered by their priority.
Collection<Format>	DefaultFormatService.getOutputFormats()
Collection<Format>	FormatService.getOutputFormats()

Methods in io.scif.services with parameters of type Format

Modifier and Type	Method and Description
void	DefaultFormatService.addComponents(Format format)
void	FormatService.addComponents(Format format) Creates mappings between this Format and its components.
boolean	DefaultFormatService.addFormat(Format format)
<M extends Metadata> boolean	FormatService.addFormat(Format format) Makes the provided Format available for image IO operations in this context.
void	DefaultFormatService.removeComponents(Format format)
void	FormatService.removeComponents(Format format) Removes any mappings involving this Format's components.
boolean	DefaultFormatService.removeFormat(Format format)
boolean	FormatService.removeFormat(Format format) Removes the provided Format from this context, if it was previously available.