| Package | Description |
|---|---|
| io.scif |
Provides the interfaces and default implementations for the components of
SCIFIO, and the context for instantiating these components.
|
| io.scif.formats |
Provides
Format implementations for all file formats that are
supported by default in SCIFIO. |
| io.scif.formats.qt |
| Modifier and Type | Method and Description |
|---|---|
ByteArrayPlane |
ByteArrayReader.createPlane(ImageMetadata meta,
net.imglib2.Interval bounds) |
ByteArrayPlane |
ByteArrayReader.createPlane(net.imglib2.Interval bounds) |
ByteArrayPlane |
DefaultReader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config)
Non-functional openPlane implementation.
|
| Modifier and Type | Method and Description |
|---|---|
ByteArrayPlane |
DefaultReader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config)
Non-functional openPlane implementation.
|
| Modifier and Type | Method and Description |
|---|---|
ByteArrayPlane |
AVIFormat.Metadata.getLastPlane() |
ByteArrayPlane |
NRRDFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
FITSFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
MinimalTIFFFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
PGMFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
JPEGTileFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
JPEG2000Format.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
BMPFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
KontronFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
PCXFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
EPSFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
MicromanagerFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
GIFFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
ScancoISQFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
StratecPQCTFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
DICOMFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
AVIFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
ICSFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
TestImgFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
| Modifier and Type | Method and Description |
|---|---|
ByteArrayPlane |
NRRDFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
FITSFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
MinimalTIFFFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
PGMFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
JPEGTileFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
JPEG2000Format.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
BMPFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
KontronFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
PCXFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
EPSFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
MicromanagerFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
GIFFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
ScancoISQFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
StratecPQCTFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
DICOMFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
AVIFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
ICSFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
TestImgFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
void |
AVIFormat.Metadata.setLastPlane(ByteArrayPlane lastPlane) |
| Modifier and Type | Method and Description |
|---|---|
ByteArrayPlane |
PICTFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
NativeQTFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
| Modifier and Type | Method and Description |
|---|---|
ByteArrayPlane |
PICTFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
ByteArrayPlane |
NativeQTFormat.Reader.openPlane(int imageIndex,
long planeIndex,
ByteArrayPlane plane,
net.imglib2.Interval bounds,
SCIFIOConfig config) |
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