Gridded3DSet (VisAD 2.0.0-scijava-2-SNAPSHOT API)

java.lang.Object
- visad.ThingImpl
- - visad.DataImpl
  - - visad.Set
    - - visad.SimpleSet
      - visad.SampledSet
        
        visad.GriddedSet
        
        visad.Gridded3DSet

All Implemented Interfaces:

Serializable, Cloneable, Data, GriddedSetIface, SampledSetIface, SetIface, SimpleSetIface, Thing

Direct Known Subclasses:

Gridded3DDoubleSet, Linear3DSet
```
public class Gridded3DSet
extends GriddedSet
```
Gridded3DSet represents a finite set of samples of R^3.

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class visad.DataImpl
  DataImpl.Syncher

Field Summary
- Fields inherited from interface visad.Data
  ABS, ACOS, ACOS_DEGREES, ADD, ASIN, ASIN_DEGREES, ATAN, ATAN_DEGREES, ATAN2, ATAN2_DEGREES, CEIL, COS, COS_DEGREES, DEGREES_TO_RADIANS, DEPENDENT, DIVIDE, EXP, FLOOR, INDEPENDENT, INV_ATAN2, INV_ATAN2_DEGREES, INV_DIVIDE, INV_POW, INV_REMAINDER, INV_SUBTRACT, LOG, MAX, MIN, MULTIPLY, NEAREST_NEIGHBOR, NEGATE, NO_ERRORS, NOP, POW, RADIANS_TO_DEGREES, REMAINDER, RINT, ROUND, SIN, SIN_DEGREES, SQRT, SUBTRACT, TAN, TAN_DEGREES, WEIGHTED_AVERAGE

Constructor Summary

Constructors
Constructor and Description
`Gridded3DSet(MathType type, float[][] samples, int lengthX)` a 3-D set with manifold dimension = 1, with null errors, CoordinateSystem and Units are defaults from type
`Gridded3DSet(MathType type, float[][] samples, int lengthX, CoordinateSystem coord_sys, Unit[] units, ErrorEstimate[] errors)` a 3-D set with manifold dimension = 1; samples array is organized float[3][number_of_samples] where lengthX = number_of_samples; no geometric constraint on samples; coordinate_system and units must be compatible with defaults for type, or may be null; errors may be null
`Gridded3DSet(MathType type, float[][] samples, int lengthX, CoordinateSystem coord_sys, Unit[] units, ErrorEstimate[] errors, boolean copy)`
`Gridded3DSet(MathType type, float[][] samples, int lengthX, int lengthY)` a 3-D set with manifold dimension = 2, with null errors, CoordinateSystem and Units are defaults from type
`Gridded3DSet(MathType type, float[][] samples, int lengthX, int lengthY, CoordinateSystem coord_sys, Unit[] units, ErrorEstimate[] errors)` a 3-D set with manifold dimension = 2; samples array is organized float[3][number_of_samples] where lengthX * lengthY = number_of_samples; no geometric constraint on samples; the X component increases fastest in the second index of samples; coordinate_system and units must be compatible with defaults for type, or may be null; errors may be null
`Gridded3DSet(MathType type, float[][] samples, int lengthX, int lengthY, CoordinateSystem coord_sys, Unit[] units, ErrorEstimate[] errors, boolean copy)`
`Gridded3DSet(MathType type, float[][] samples, int lengthX, int lengthY, int lengthZ)` a 3-D set whose topology is a lengthX x lengthY x lengthZ grid, with null errors, CoordinateSystem and Units are defaults from type
`Gridded3DSet(MathType type, float[][] samples, int lengthX, int lengthY, int lengthZ, CoordinateSystem coord_sys, Unit[] units, ErrorEstimate[] errors)` a 3-D set whose topology is a lengthX x lengthY x lengthZ grid; samples array is organized float[3][number_of_samples] where lengthX * lengthY * lengthZ = number_of_samples; samples must form a non-degenerate 3-D grid (no bow-tie-shaped grid cubes); the X component increases fastest and the Z component slowest in the second index of samples; coordinate_system and units must be compatible with defaults for type, or may be null; errors may be null
`Gridded3DSet(MathType type, float[][] samples, int lengthX, int lengthY, int lengthZ, CoordinateSystem coord_sys, Unit[] units, ErrorEstimate[] errors, boolean copy)`
`Gridded3DSet(MathType type, float[][] samples, int lengthX, int lengthY, int lengthZ, CoordinateSystem coord_sys, Unit[] units, ErrorEstimate[] errors, boolean copy, boolean test)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`Object`	`cloneButType(MathType type)` copy this Set, but give it a new MathType; this is safe, since constructor checks consistency of DomainCoordinateSystem and SetUnits with Type
`static int`	`flags(float isovalue, int[] ptFLAG, int[] ptAUX, int[] pcube, float[] ptGRID, int xdim, int ydim, int zdim)`
`float[][]`	`getNormals(float[][] grid)`
`float[]`	`getStartPoint(float x, float y, float z)`
`float[][]`	`gridToValue(float[][] grid)` Transform an array of non-integer grid coordinates to an array of values in R^DomainDimension.
`float[][]`	`gridToValue(float[][] grid, boolean altFormat)` Transform an array of non-integer grid coordinates to an array of values in R^DomainDimension.
`float[][]`	`indexToValue(int[] index)` convert an array of 1-D indices to an array of values in R^DomainDimension
`static void`	`main(String[] argv)`
`static void`	`make_normals(float[] VX, float[] VY, float[] VZ, float[] NX, float[] NY, float[] NZ, int nvertex, int npolygons, float[] Pnx, float[] Pny, float[] Pnz, float[] NxA, float[] NxB, float[] NyA, float[] NyB, float[] NzA, float[] NzB, int[] Pol_f_Vert, int[] Vert_f_Pol)`
`VisADGeometryArray`	`make2DGeometry(byte[][] color_values, boolean indexed)` create a 2-D GeometryArray from this Set and color_values
`VisADGeometryArray[][]`	`makeIsoLines(float[] intervals, float lowlimit, float highlimit, float base, float[] fieldValues, byte[][] color_values, boolean[] swap, boolean dash, boolean fill, ScalarMap[] smap, double[] scale, double label_size, boolean sphericalDisplayCS)` return basic lines in array[0], fill-ins in array[1] and labels in array[2]
`VisADGeometryArray`	`makeIsoSurface(float isolevel, float[] fieldValues, byte[][] color_values, boolean indexed)`
`VisADGeometryArray`	`makeIsoSurfaceMissingSpatial(float isolevel, float[] fieldValues, byte[][] color_values, boolean indexed, ShadowRealTupleType Domain, ShadowRealTupleType domain_reference, Unit[] domain_units, CoordinateSystem dataCoordinateSystem, CoordinateSystem coord_sys, ShadowRealType[] DomainReferenceComponents, DisplayTupleType spatial_tuple, float[][] spatial_offset_values)`
`static float[]`	`makeNormals(float[] coordinates, int LengthX, int LengthY)`
`static int`	`poly_triangle_stripe(int[] vet_pol, int[] Tri_Stripe, int nvertex, int npolygons, int[] Pol_f_Vert, int[] Vert_f_Pol)`
`float[][]`	`valueToGrid(float[][] value)` transform an array of values in R^DomainDimension to an array of non-integer grid coordinates
`float[][]`	`valueToGrid(float[][] value, int[] guess)` transform an array of values in R^DomainDimension to an array of non-integer grid coordinates
`int[]`	`valueToIndex(float[][] value)` convert an array of values in R^DomainDimension to an array of 1-D indices

Methods inherited from class visad.GriddedSet
create, create, create, create, equals, getLength, getLengths, getNeighbors, getNeighbors, getWedge, hashCode, longString, makeSpatial, valueToInterp, valueToInterp

Methods inherited from class visad.SampledSet
clone, computeRanges, computeRanges, cram_missing, finalize, getHi, getLow, getMySamples, getNeighbors, getSamples, getSamples, isMissing, make1DGeometry, make3DGeometry, makePointGeometry, setCacheSizeThreshold, setGeometryArray, setGeometryArray, setMySamples

Methods inherited from class visad.SimpleSet
getManifoldDimension

Methods inherited from class visad.Set
__getitem__, __len__, addEqualsCache, addNotEqualsCache, copyDoubles, copyFloats, doubleToFloat, doubleToIndex, equalUnitAndCS, floatToDouble, getCoordinateSystem, getDimension, getDoubles, getDoubles, getLength, getSetErrors, getSetUnits, indexToDouble, longString, merge1DSets, testEqualsCache, testNotEqualsCache, unary, unitAndCSHashCode

Methods inherited from class visad.DataImpl
__add__, __add__, __div__, __div__, __mod__, __mod__, __mul__, __mul__, __neg__, __pow__, __pow__, __radd__, __rdiv__, __rmod__, __rmul__, __rpow__, __rsub__, __sub__, __sub__, abs, abs, acos, acos, acosDegrees, acosDegrees, add, add, adjustSamplingError, asin, asin, asinDegrees, asinDegrees, atan, atan, atan2, atan2, atan2Degrees, atan2Degrees, atanDegrees, atanDegrees, binary, binary, ceil, ceil, changeMathType, computeRanges, computeRanges, cos, cos, cosDegrees, cosDegrees, dataClone, divide, divide, exp, exp, floor, floor, getType, local, log, log, max, max, min, min, multiply, multiply, negate, negate, notifyReferences, pow, pow, remainder, remainder, rint, rint, round, round, sin, sin, sinDegrees, sinDegrees, sqrt, sqrt, subtract, subtract, tan, tan, tanDegrees, tanDegrees, toString, unary

Methods inherited from class visad.ThingImpl
addReference, removeReference

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface visad.SampledSetIface
getHi, getLow

Methods inherited from interface visad.SetIface
cram_missing, doubleToIndex, equalUnitAndCS, getCoordinateSystem, getDimension, getDoubles, getDoubles, getLength, getManifoldDimension, getNeighbors, getSamples, getSamples, getSetErrors, getSetUnits, indexToDouble, make1DGeometry, make3DGeometry, makePointGeometry, merge1DSets

Methods inherited from interface visad.Data
abs, abs, acos, acos, acosDegrees, acosDegrees, add, add, adjustSamplingError, asin, asin, asinDegrees, asinDegrees, atan, atan, atan2, atan2, atan2Degrees, atan2Degrees, atanDegrees, atanDegrees, binary, binary, ceil, ceil, changeMathType, computeRanges, computeRanges, computeRanges, cos, cos, cosDegrees, cosDegrees, dataClone, divide, divide, exp, exp, floor, floor, getType, isMissing, local, log, log, longString, max, max, min, min, multiply, multiply, negate, negate, pow, pow, remainder, remainder, rint, rint, round, round, sin, sin, sinDegrees, sinDegrees, sqrt, sqrt, subtract, subtract, tan, tan, tanDegrees, tanDegrees, unary, unary

Methods inherited from interface visad.Thing
addReference, removeReference

Constructor Detail

Gridded3DSet

public Gridded3DSet(MathType type,
                    float[][] samples,
                    int lengthX,
                    int lengthY,
                    int lengthZ)
             throws VisADException

a 3-D set whose topology is a lengthX x lengthY x lengthZ grid, with null errors, CoordinateSystem and Units are defaults from type

Throws:: VisADException

Gridded3DSet
```
public Gridded3DSet(MathType type,
                    float[][] samples,
                    int lengthX,
                    int lengthY,
                    int lengthZ,
                    CoordinateSystem coord_sys,
                    Unit[] units,
                    ErrorEstimate[] errors)
             throws VisADException
```
a 3-D set whose topology is a lengthX x lengthY x lengthZ grid; samples array is organized float[3][number_of_samples] where lengthX * lengthY * lengthZ = number_of_samples; samples must form a non-degenerate 3-D grid (no bow-tie-shaped grid cubes); the X component increases fastest and the Z component slowest in the second index of samples; coordinate_system and units must be compatible with defaults for type, or may be null; errors may be null

Throws:

VisADException

Gridded3DSet

public Gridded3DSet(MathType type,
                    float[][] samples,
                    int lengthX,
                    int lengthY,
                    int lengthZ,
                    CoordinateSystem coord_sys,
                    Unit[] units,
                    ErrorEstimate[] errors,
                    boolean copy)
             throws VisADException

Throws:: VisADException

Gridded3DSet

public Gridded3DSet(MathType type,
                    float[][] samples,
                    int lengthX,
                    int lengthY,
                    int lengthZ,
                    CoordinateSystem coord_sys,
                    Unit[] units,
                    ErrorEstimate[] errors,
                    boolean copy,
                    boolean test)
             throws VisADException

Throws:: VisADException

Gridded3DSet

public Gridded3DSet(MathType type,
                    float[][] samples,
                    int lengthX,
                    int lengthY)
             throws VisADException

a 3-D set with manifold dimension = 2, with null errors, CoordinateSystem and Units are defaults from type

Throws:: VisADException

Gridded3DSet
```
public Gridded3DSet(MathType type,
                    float[][] samples,
                    int lengthX,
                    int lengthY,
                    CoordinateSystem coord_sys,
                    Unit[] units,
                    ErrorEstimate[] errors)
             throws VisADException
```
a 3-D set with manifold dimension = 2; samples array is organized float[3][number_of_samples] where lengthX * lengthY = number_of_samples; no geometric constraint on samples; the X component increases fastest in the second index of samples; coordinate_system and units must be compatible with defaults for type, or may be null; errors may be null

Throws:

VisADException

Gridded3DSet

public Gridded3DSet(MathType type,
                    float[][] samples,
                    int lengthX,
                    int lengthY,
                    CoordinateSystem coord_sys,
                    Unit[] units,
                    ErrorEstimate[] errors,
                    boolean copy)
             throws VisADException

Throws:: VisADException

Gridded3DSet

public Gridded3DSet(MathType type,
                    float[][] samples,
                    int lengthX)
             throws VisADException

a 3-D set with manifold dimension = 1, with null errors, CoordinateSystem and Units are defaults from type

Throws:: VisADException

Gridded3DSet

public Gridded3DSet(MathType type,
                    float[][] samples,
                    int lengthX,
                    CoordinateSystem coord_sys,
                    Unit[] units,
                    ErrorEstimate[] errors)
             throws VisADException

a 3-D set with manifold dimension = 1; samples array is organized float[3][number_of_samples] where lengthX = number_of_samples; no geometric constraint on samples; coordinate_system and units must be compatible with defaults for type, or may be null; errors may be null

Throws:: VisADException

Gridded3DSet

public Gridded3DSet(MathType type,
                    float[][] samples,
                    int lengthX,
                    CoordinateSystem coord_sys,
                    Unit[] units,
                    ErrorEstimate[] errors,
                    boolean copy)
             throws VisADException

Throws:: VisADException

Method Detail

indexToValue
```
public float[][] indexToValue(int[] index)
                       throws VisADException
```
Description copied from class: GriddedSet

convert an array of 1-D indices to an array of values in R^DomainDimension

Specified by:

indexToValue in interface SetIface

Overrides:

indexToValue in class GriddedSet

Parameters:

index - array of integer indices

Returns:

float[domain_dimension][indices.length] array of Set values

Throws:

VisADException - a VisAD error occurred

valueToIndex
```
public int[] valueToIndex(float[][] value)
                   throws VisADException
```
convert an array of values in R^DomainDimension to an array of 1-D indices

Specified by:

valueToIndex in interface SetIface

Overrides:

valueToIndex in class GriddedSet

Parameters:

value - float[domain_dimension][number_of_values] array of Set values

Returns:

array of integer indices

Throws:

VisADException - a VisAD error occurred

gridToValue
```
public float[][] gridToValue(float[][] grid)
                      throws VisADException
```
Transform an array of non-integer grid coordinates to an array of values in R^DomainDimension.

Specified by:

gridToValue in interface GriddedSetIface

Overrides:

gridToValue in class GriddedSet

Parameters:

grid - Grid values, where dim1 is the grid coordinate dimension and dim2 is the length of the grid.

Returns:

R^n coordinates where dim1 is DomainDimension and dim2 is the length of the grid.

Throws:

VisADException

gridToValue
```
public float[][] gridToValue(float[][] grid,
                             boolean altFormat)
                      throws VisADException
```
Transform an array of non-integer grid coordinates to an array of values in R^DomainDimension.

Parameters:

grid - Grid values, where dim1 is the grid coordinate dimension and dim2 is the length of the grid.

Returns:

R^n coordinates where dim1 is 1 and dim2 is gird_len*coord_dim.

Throws:

VisADException

valueToGrid
```
public float[][] valueToGrid(float[][] value)
                      throws VisADException
```
Description copied from class: GriddedSet

transform an array of values in R^DomainDimension to an array of non-integer grid coordinates

Specified by:

valueToGrid in interface GriddedSetIface

Overrides:

valueToGrid in class GriddedSet

Parameters:

value - The array of points for which non-integer grid coordinates are desired. value[i][j] is the i-th coordinate of the j-th point.

Returns:

The array of grid coordinates corresponding to the points. Element [i][j] is the i-th non-integer grid coordinate of the j-th point.

Throws:

VisADException - VisAD failure.

valueToGrid
```
public float[][] valueToGrid(float[][] value,
                             int[] guess)
                      throws VisADException
```
transform an array of values in R^DomainDimension to an array of non-integer grid coordinates

Overrides:

valueToGrid in class GriddedSet

Throws:

VisADException

getStartPoint

public float[] getStartPoint(float x,
                             float y,
                             float z)

makeIsoLines

public VisADGeometryArray[][] makeIsoLines(float[] intervals,
                                           float lowlimit,
                                           float highlimit,
                                           float base,
                                           float[] fieldValues,
                                           byte[][] color_values,
                                           boolean[] swap,
                                           boolean dash,
                                           boolean fill,
                                           ScalarMap[] smap,
                                           double[] scale,
                                           double label_size,
                                           boolean sphericalDisplayCS)
                                    throws VisADException

Description copied from class: Set

return basic lines in array[0], fill-ins in array[1] and labels in array[2]

Specified by:: makeIsoLines in interface SetIface
Overrides:: makeIsoLines in class Set
Throws:: VisADException

getNormals

public float[][] getNormals(float[][] grid)
                     throws VisADException

Throws:: VisADException

makeIsoSurface

public VisADGeometryArray makeIsoSurface(float isolevel,
                                         float[] fieldValues,
                                         byte[][] color_values,
                                         boolean indexed)
                                  throws VisADException

Specified by:: makeIsoSurface in interface SetIface
Overrides:: makeIsoSurface in class Set
Throws:: VisADException

makeIsoSurfaceMissingSpatial

public VisADGeometryArray makeIsoSurfaceMissingSpatial(float isolevel,
                                                       float[] fieldValues,
                                                       byte[][] color_values,
                                                       boolean indexed,
                                                       ShadowRealTupleType Domain,
                                                       ShadowRealTupleType domain_reference,
                                                       Unit[] domain_units,
                                                       CoordinateSystem dataCoordinateSystem,
                                                       CoordinateSystem coord_sys,
                                                       ShadowRealType[] DomainReferenceComponents,
                                                       DisplayTupleType spatial_tuple,
                                                       float[][] spatial_offset_values)
                                                throws VisADException

Throws:: VisADException

flags

public static int flags(float isovalue,
                        int[] ptFLAG,
                        int[] ptAUX,
                        int[] pcube,
                        float[] ptGRID,
                        int xdim,
                        int ydim,
                        int zdim)

make_normals

public static void make_normals(float[] VX,
                                float[] VY,
                                float[] VZ,
                                float[] NX,
                                float[] NY,
                                float[] NZ,
                                int nvertex,
                                int npolygons,
                                float[] Pnx,
                                float[] Pny,
                                float[] Pnz,
                                float[] NxA,
                                float[] NxB,
                                float[] NyA,
                                float[] NyB,
                                float[] NzA,
                                float[] NzB,
                                int[] Pol_f_Vert,
                                int[] Vert_f_Pol)
                         throws VisADException

Throws:: VisADException

poly_triangle_stripe

public static int poly_triangle_stripe(int[] vet_pol,
                                       int[] Tri_Stripe,
                                       int nvertex,
                                       int npolygons,
                                       int[] Pol_f_Vert,
                                       int[] Vert_f_Pol)
                                throws VisADException

Throws:: VisADException

makeNormals

public static float[] makeNormals(float[] coordinates,
                                  int LengthX,
                                  int LengthY)

make2DGeometry

public VisADGeometryArray make2DGeometry(byte[][] color_values,
                                         boolean indexed)
                                  throws VisADException

create a 2-D GeometryArray from this Set and color_values

Specified by:: make2DGeometry in interface SetIface
Overrides:: make2DGeometry in class Set
Throws:: VisADException

cloneButType
```
public Object cloneButType(MathType type)
                    throws VisADException
```
Description copied from class: Set

copy this Set, but give it a new MathType; this is safe, since constructor checks consistency of DomainCoordinateSystem and SetUnits with Type

Specified by:

cloneButType in interface SetIface

Overrides:

cloneButType in class GriddedSet

Parameters:

type - The MathType for the clone.

Returns:

A clone of this set with the new MathType.

Throws:

VisADException - VisAD failure.

main

public static void main(String[] argv)
                 throws VisADException

Throws:: VisADException

Class Gridded3DSet

Nested Class Summary

Nested classes/interfaces inherited from class visad.DataImpl

Field Summary

Fields inherited from interface visad.Data

Constructor Summary

Method Summary

Methods inherited from class visad.GriddedSet

Methods inherited from class visad.SampledSet

Methods inherited from class visad.SimpleSet

Methods inherited from class visad.Set

Methods inherited from class visad.DataImpl

Methods inherited from class visad.ThingImpl

Methods inherited from class java.lang.Object

Methods inherited from interface visad.SampledSetIface

Methods inherited from interface visad.SetIface

Methods inherited from interface visad.Data

Methods inherited from interface visad.Thing

Constructor Detail

Gridded3DSet

Gridded3DSet

Gridded3DSet

Gridded3DSet

Gridded3DSet

Gridded3DSet

Gridded3DSet

Gridded3DSet

Gridded3DSet

Gridded3DSet

Method Detail

indexToValue

valueToIndex

gridToValue

gridToValue

valueToGrid

valueToGrid

getStartPoint

makeIsoLines

getNormals

makeIsoSurface

makeIsoSurfaceMissingSpatial

flags

make_normals

poly_triangle_stripe

makeNormals

make2DGeometry

cloneButType

main