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A

about() - Method in class org.scijava.app.AbstractApp
 
about() - Method in interface org.scijava.app.App
Displays information about the application.
about() - Method in interface org.scijava.platform.AppEventService
Deprecated.
Use App.about() instead.
about() - Method in class org.scijava.platform.DefaultAppEventService
Deprecated.
 
AbstractApp - Class in org.scijava.app
Abstract superclass of App implementations.
AbstractApp() - Constructor for class org.scijava.app.AbstractApp
 
AbstractAutoCompleter - Class in org.scijava.script
Abstract base class for AutoCompleter implementations.
AbstractAutoCompleter(ScriptLanguage) - Constructor for class org.scijava.script.AbstractAutoCompleter
 
AbstractAWTMenuCreator<T> - Class in org.scijava.ui.awt.menu
Populates an AWT menu structure with menu items from a ShadowMenu.
AbstractAWTMenuCreator() - Constructor for class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
AbstractBasicDetails - Class in org.scijava
Abstract superclass of BasicDetails implementations.
AbstractBasicDetails() - Constructor for class org.scijava.AbstractBasicDetails
 
AbstractCodeRunner - Class in org.scijava.run
Abstract superclass of CodeRunner implementations.
AbstractCodeRunner() - Constructor for class org.scijava.run.AbstractCodeRunner
 
AbstractConsoleArgument - Class in org.scijava.console
Abstract superclass of ConsoleArgument implementations.
AbstractConsoleArgument() - Constructor for class org.scijava.console.AbstractConsoleArgument
 
AbstractConsoleArgument(String...) - Constructor for class org.scijava.console.AbstractConsoleArgument
 
AbstractConsoleArgument(int, String...) - Constructor for class org.scijava.console.AbstractConsoleArgument
 
AbstractConsolePane<C> - Class in org.scijava.ui.console
Abstract base class of ConsolePane implementations.
AbstractConsolePane(Context) - Constructor for class org.scijava.ui.console.AbstractConsolePane
 
AbstractContextual - Class in org.scijava
Abstract base class for Contextual objects.
AbstractContextual() - Constructor for class org.scijava.AbstractContextual
 
AbstractConverter<I,O> - Class in org.scijava.convert
Abstract superclass for Converter plugins.
AbstractConverter() - Constructor for class org.scijava.convert.AbstractConverter
 
AbstractConvertService - Class in org.scijava.convert
Abstract superclass for ConvertService implementations.
AbstractConvertService() - Constructor for class org.scijava.convert.AbstractConvertService
 
AbstractDataHandle<L extends Location> - Class in org.scijava.io.handle
Abstract base class for DataHandle plugins.
AbstractDataHandle() - Constructor for class org.scijava.io.handle.AbstractDataHandle
 
AbstractDisplay<T> - Class in org.scijava.display
Abstract superclass of Display implementations.
AbstractDisplay(Class<T>) - Constructor for class org.scijava.display.AbstractDisplay
 
AbstractDisplayViewer<T> - Class in org.scijava.ui.viewer
The AbstractDisplayViewer provides some basic generic implementations for a DisplayViewer such as storing and providing the display, window and panel for a DisplayViewer.
AbstractDisplayViewer() - Constructor for class org.scijava.ui.viewer.AbstractDisplayViewer
 
AbstractDragAndDropData - Class in org.scijava.ui.dnd
Abstract superclass for DragAndDropData implementations.
AbstractDragAndDropData() - Constructor for class org.scijava.ui.dnd.AbstractDragAndDropData
 
AbstractDragAndDropHandler<D> - Class in org.scijava.ui.dnd
Abstract superclass for DragAndDropHandlers.
AbstractDragAndDropHandler() - Constructor for class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
AbstractEvaluator - Class in org.scijava.parse.eval
Base class for Evaluator implementations.
AbstractEvaluator() - Constructor for class org.scijava.parse.eval.AbstractEvaluator
 
AbstractEvaluator(ExpressionParser) - Constructor for class org.scijava.parse.eval.AbstractEvaluator
 
AbstractGateway - Class in org.scijava
Abstract superclass for Gateway implementations.
AbstractGateway() - Constructor for class org.scijava.AbstractGateway
 
AbstractGateway(String, Context) - Constructor for class org.scijava.AbstractGateway
 
AbstractHandlerPlugin<D> - Class in org.scijava.plugin
Abstract base class for HandlerPlugin implementations.
AbstractHandlerPlugin() - Constructor for class org.scijava.plugin.AbstractHandlerPlugin
 
AbstractHandlerService<DT,PT extends HandlerPlugin<DT>> - Class in org.scijava.plugin
Abstract base class for HandlerServices.
AbstractHandlerService() - Constructor for class org.scijava.plugin.AbstractHandlerService
 
AbstractHigherOrderHandle<L extends Location> - Class in org.scijava.io.handle
Abstract superclass for DataHandles that operate over other DataHandles.
AbstractHigherOrderHandle(DataHandle<L>) - Constructor for class org.scijava.io.handle.AbstractHigherOrderHandle
 
AbstractIndexWriter - Class in org.scijava.annotations
Writes annotations as JSON-formatted files.
AbstractIndexWriter() - Constructor for class org.scijava.annotations.AbstractIndexWriter
 
AbstractIndexWriter.StreamFactory - Interface in org.scijava.annotations
 
AbstractInputHarvester<P,W> - Class in org.scijava.widget
Abstract superclass for InputHarvesters.
AbstractInputHarvester() - Constructor for class org.scijava.widget.AbstractInputHarvester
 
AbstractInputHarvesterPlugin<P,W> - Class in org.scijava.ui
AbstractInputHarvesterPlugin is an InputHarvester that implements the PreprocessorPlugin interface.
AbstractInputHarvesterPlugin() - Constructor for class org.scijava.ui.AbstractInputHarvesterPlugin
 
AbstractInputPanel<P,W> - Class in org.scijava.widget
Abstract superclass of UI-specific InputPanel implementations.
AbstractInputPanel() - Constructor for class org.scijava.widget.AbstractInputPanel
 
AbstractInputWidget<T,W> - Class in org.scijava.widget
Base class for input widgets.
AbstractInputWidget() - Constructor for class org.scijava.widget.AbstractInputWidget
 
AbstractIOPlugin<D> - Class in org.scijava.io
Abstract base class for IOPlugins.
AbstractIOPlugin() - Constructor for class org.scijava.io.AbstractIOPlugin
 
AbstractLevelsFilter - Class in org.scijava.config.logback
Filters log messages, keeping only certain levels.
AbstractLevelsFilter(Level...) - Constructor for class org.scijava.config.logback.AbstractLevelsFilter
 
AbstractLocation - Class in org.scijava.io.location
Abstract base class for Location implementations.
AbstractLocation() - Constructor for class org.scijava.io.location.AbstractLocation
 
AbstractLocationResolver - Class in org.scijava.io.location
Abstract super class for LocationResolver plugins.
AbstractLocationResolver(String...) - Constructor for class org.scijava.io.location.AbstractLocationResolver
 
AbstractLogService - Class in org.scijava.log
Base class for LogService implementations.
AbstractLogService() - Constructor for class org.scijava.log.AbstractLogService
 
AbstractLogService(Properties) - Constructor for class org.scijava.log.AbstractLogService
 
AbstractMenuCreator<T,M> - Class in org.scijava.menu
Abstract helper class for generating a menu structure.
AbstractMenuCreator() - Constructor for class org.scijava.menu.AbstractMenuCreator
 
AbstractModule - Class in org.scijava.module
Abstract superclass of Module implementations.
AbstractModule() - Constructor for class org.scijava.module.AbstractModule
 
AbstractModuleInfo - Class in org.scijava.module
Abstract superclass of ModuleInfo implementation.
AbstractModuleInfo() - Constructor for class org.scijava.module.AbstractModuleInfo
 
AbstractModuleItem<T> - Class in org.scijava.module
Abstract superclass of ModuleItem implementations.
AbstractModuleItem(ModuleInfo) - Constructor for class org.scijava.module.AbstractModuleItem
 
AbstractPlatform - Class in org.scijava.platform
Abstract superclass of platform implementations.
AbstractPlatform() - Constructor for class org.scijava.platform.AbstractPlatform
 
AbstractPOMHandler - Class in org.scijava.minimaven
Abstract base class for POM SAX handlers.
AbstractPOMHandler() - Constructor for class org.scijava.minimaven.AbstractPOMHandler
 
AbstractPostprocessorPlugin - Class in org.scijava.module.process
Abstract base class for plugin postprocessors.
AbstractPostprocessorPlugin() - Constructor for class org.scijava.module.process.AbstractPostprocessorPlugin
 
AbstractPrefService - Class in org.scijava.prefs
Abstract PrefService implementation.
AbstractPrefService() - Constructor for class org.scijava.prefs.AbstractPrefService
 
AbstractPreprocessorPlugin - Class in org.scijava.module.process
Abstract base class for plugin preprocessors.
AbstractPreprocessorPlugin() - Constructor for class org.scijava.module.process.AbstractPreprocessorPlugin
 
AbstractPrimitiveArray<ArrayType,BaseType> - Class in org.scijava.util
Abstract base class for primitive-type extensible arrays.
AbstractPrimitiveArray(Class<BaseType>) - Constructor for class org.scijava.util.AbstractPrimitiveArray
Constructs an extensible array of primitive type elements, backed by a fixed-size array.
AbstractPrimitiveArray(Class<BaseType>, int) - Constructor for class org.scijava.util.AbstractPrimitiveArray
Constructs an extensible array of primitive type elements, backed by a fixed-size array.
AbstractPrimitiveArray(Class<BaseType>, ArrayType) - Constructor for class org.scijava.util.AbstractPrimitiveArray
Constructs an extensible array of primitive type elements, backed by the given fixed-size array.
AbstractPTService<PT extends SciJavaPlugin> - Class in org.scijava.plugin
Abstract base class for PTServices.
AbstractPTService() - Constructor for class org.scijava.plugin.AbstractPTService
 
AbstractRemoteLocation - Class in org.scijava.io.location
Abstract base class for RemoteLocation implementations.
AbstractRemoteLocation() - Constructor for class org.scijava.io.location.AbstractRemoteLocation
 
AbstractRichPlugin - Class in org.scijava.plugin
Abstract base class for RichPlugin implementations.
AbstractRichPlugin() - Constructor for class org.scijava.plugin.AbstractRichPlugin
 
AbstractScriptContext - Class in org.scijava.script
A minimal implementation of ScriptContext for use in the AbstractScriptEngine.
AbstractScriptContext() - Constructor for class org.scijava.script.AbstractScriptContext
 
AbstractScriptEngine - Class in org.scijava.script
This class implements dummy versions for ScriptEngine's methods that are not needed by the SciJava scripting framework.
AbstractScriptEngine() - Constructor for class org.scijava.script.AbstractScriptEngine
 
AbstractScriptHeader - Class in org.scijava.script
Abstract superclass for ScriptHeader implementations.
AbstractScriptHeader() - Constructor for class org.scijava.script.AbstractScriptHeader
 
AbstractScriptLanguage - Class in org.scijava.script
Abstract superclass for ScriptLanguage implementations.
AbstractScriptLanguage() - Constructor for class org.scijava.script.AbstractScriptLanguage
 
AbstractSeekableStreamHandle<L extends Location> - Class in org.scijava.io.handle
 
AbstractSeekableStreamHandle() - Constructor for class org.scijava.io.handle.AbstractSeekableStreamHandle
 
AbstractService - Class in org.scijava.service
Abstract superclass of Service implementations.
AbstractService() - Constructor for class org.scijava.service.AbstractService
 
AbstractSingleInputPreprocessor - Class in org.scijava.module.process
Abstract superclass for PreprocessorPlugin implementations that populate singleton inputs.
AbstractSingleInputPreprocessor() - Constructor for class org.scijava.module.process.AbstractSingleInputPreprocessor
 
AbstractSingletonService<PT extends SingletonPlugin> - Class in org.scijava.plugin
Abstract base class for SingletonServices.
AbstractSingletonService() - Constructor for class org.scijava.plugin.AbstractSingletonService
 
AbstractStackEvaluator - Class in org.scijava.parse.eval
Base class for StackEvaluator implementations.
AbstractStackEvaluator() - Constructor for class org.scijava.parse.eval.AbstractStackEvaluator
 
AbstractStackEvaluator(ExpressionParser) - Constructor for class org.scijava.parse.eval.AbstractStackEvaluator
 
AbstractStandardStackEvaluator - Class in org.scijava.parse.eval
Base class for stack-based evaluators which support the standard operators.
AbstractStandardStackEvaluator() - Constructor for class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
AbstractStandardStackEvaluator(ExpressionParser) - Constructor for class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
AbstractStreamHandle<L extends Location> - Class in org.scijava.io.handle
Abstract base class for StreamHandle implementations.
AbstractStreamHandle() - Constructor for class org.scijava.io.handle.AbstractStreamHandle
 
AbstractSwingMenuCreator<T> - Class in org.scijava.ui.swing.menu
Populates a Swing menu structure with menu items from a ShadowMenu.
AbstractSwingMenuCreator() - Constructor for class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
AbstractSwingUI - Class in org.scijava.ui.swing
Abstract superclass for Swing-based user interfaces.
AbstractSwingUI() - Constructor for class org.scijava.ui.swing.AbstractSwingUI
 
AbstractTable<C extends Column<? extends T>,T> - Class in org.scijava.table
Abstract superclass for column-oriented Table implementations.
AbstractTable() - Constructor for class org.scijava.table.AbstractTable
Creates an empty table.
AbstractTable(int, int) - Constructor for class org.scijava.table.AbstractTable
Creates a table with the given column and row dimensions.
AbstractTableDisplayViewer - Class in org.scijava.ui.viewer.table
Implements the UI-independent elements of a Table viewer.
AbstractTableDisplayViewer() - Constructor for class org.scijava.ui.viewer.table.AbstractTableDisplayViewer
 
AbstractTextDisplayViewer - Class in org.scijava.ui.viewer.text
Implements the UI-independent elements of a text viewer.
AbstractTextDisplayViewer() - Constructor for class org.scijava.ui.viewer.text.AbstractTextDisplayViewer
 
AbstractTextFormat - Class in org.scijava.text
Abstract superclass of TextFormat implementations.
AbstractTextFormat() - Constructor for class org.scijava.text.AbstractTextFormat
 
AbstractTool - Class in org.scijava.tool
Abstract base class for Tool implementations.
AbstractTool() - Constructor for class org.scijava.tool.AbstractTool
 
AbstractTypedPlugin<D> - Class in org.scijava.plugin
Abstract base class for TypedPlugins.
AbstractTypedPlugin() - Constructor for class org.scijava.plugin.AbstractTypedPlugin
 
AbstractTypedService<DT,PT extends TypedPlugin<DT>> - Class in org.scijava.plugin
Abstract base class for TypedServices.
AbstractTypedService() - Constructor for class org.scijava.plugin.AbstractTypedService
 
AbstractUIDetails - Class in org.scijava
Abstract superclass of UIDetails implementations.
AbstractUIDetails() - Constructor for class org.scijava.AbstractUIDetails
 
AbstractUIInputWidget<T,W> - Class in org.scijava.ui
Abstract superclass of InputWidget implementations that belong to a specific UI.
AbstractUIInputWidget() - Constructor for class org.scijava.ui.AbstractUIInputWidget
 
AbstractUserInterface - Class in org.scijava.ui
Abstract superclass for UserInterface implementations.
AbstractUserInterface() - Constructor for class org.scijava.ui.AbstractUserInterface
 
AbstractWrapperPlugin<D> - Class in org.scijava.plugin
Abstract base class for WrapperPlugins.
AbstractWrapperPlugin() - Constructor for class org.scijava.plugin.AbstractWrapperPlugin
 
AbstractWrapperService<DT,PT extends WrapperPlugin<DT>> - Class in org.scijava.plugin
Abstract base class for WrapperServices.
AbstractWrapperService() - Constructor for class org.scijava.plugin.AbstractWrapperService
 
Accelerator - Class in org.scijava.input
A keyboard shortcut, consisting of a KeyCode plus InputModifiers.
Accelerator(KeyCode, InputModifiers) - Constructor for class org.scijava.input.Accelerator
 
acquireDrawer(Tool) - Method in interface org.scijava.tool.IconService
 
acquireDrawer(Tool) - Method in class org.scijava.ui.swing.SwingIconService
 
actionPerformed(ActionEvent) - Method in class org.scijava.batch.SwingScriptInfoWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.awt.widget.AWTFileWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingChoiceRadioWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingChoiceWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingColorWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingDateWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingFileListWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingObjectWidget
 
activate() - Method in interface org.scijava.tool.Tool
Informs the tool that it is now active.
activate() - Method in interface org.scijava.ui.ApplicationFrame
Activate the application frame, bringing it to the front.
activate() - Method in class org.scijava.ui.awt.AWTApplicationFrame
 
activate() - Method in class org.scijava.ui.swing.SwingApplicationFrame
 
ACTIVE_BORDER - Static variable in class org.scijava.ui.swing.SwingToolBar
 
ActiveDisplayPreprocessor - Class in org.scijava.display
Assigns the active Display when there is one single unresolved Display parameter.
ActiveDisplayPreprocessor() - Constructor for class org.scijava.display.ActiveDisplayPreprocessor
 
adapt(Object) - Method in class org.scijava.annotations.AbstractIndexWriter
 
adapt(A) - Method in class org.scijava.annotations.AbstractIndexWriter
 
AdaptedScriptEngine - Class in org.scijava.script
Abstract superclass for ScriptEngine implementations which adapt an existing ScriptEngine.
AdaptedScriptEngine(ScriptEngine) - Constructor for class org.scijava.script.AdaptedScriptEngine
 
AdaptedScriptLanguage - Class in org.scijava.script
Abstract superclass for ScriptLanguage implementations which adapt an existing ScriptEngineFactory.
AdaptedScriptLanguage(ScriptEngineFactory) - Constructor for class org.scijava.script.AdaptedScriptLanguage
Creates a new AdaptedScriptLanguage wrapping the given ScriptEngineFactory.
AdaptedScriptLanguage(String) - Constructor for class org.scijava.script.AdaptedScriptLanguage
Creates a new AdaptedScriptLanguage wrapping the ScriptEngineFactory with the given name.
add(Map<String, Object>, String, String) - Method in class org.scijava.annotations.AbstractIndexWriter
 
add(A, String) - Method in class org.scijava.annotations.DirectoryIndexer
 
add(int, T) - Method in class org.scijava.display.AbstractDisplay
 
add(T) - Method in class org.scijava.display.AbstractDisplay
 
add(String) - Method in class org.scijava.io.DefaultRecentFileService
 
add(String) - Method in interface org.scijava.io.RecentFileService
Adds or refreshes a path on the list of recent files.
add(ModuleInfo) - Method in class org.scijava.menu.ShadowMenu
Adds the given module to the menu structure.
add(String) - Method in class org.scijava.minimaven.JarClassLoader
 
add(E) - Method in class org.scijava.object.ObjectIndex
 
add(E, boolean) - Method in class org.scijava.object.ObjectIndex
Adds the object to all compatible type lists.
add(E, Class<?>, boolean) - Method in class org.scijava.object.ObjectIndex
Adds an object to type lists beneath the given type hierarchy.
add(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(String, String) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(int, int) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(long, long) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(float, float) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(double, double) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(BigInteger, BigInteger) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(BigDecimal, BigDecimal) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.ADD operator.
ADD - Static variable in class org.scijava.parse.Operators
 
add(ScriptEngineFactory, boolean) - Method in class org.scijava.script.ScriptLanguageIndex
 
add(ScriptLanguage) - Method in class org.scijava.script.ScriptLanguageIndex
 
add(C) - Method in class org.scijava.table.AbstractTable
 
add(int, C) - Method in class org.scijava.table.AbstractTable
 
add(C) - Method in interface org.scijava.table.Table
Appends the specified column to the end of the table.
add(int, C) - Method in interface org.scijava.table.Table
Inserts the specified column at the specified position in the table.
add(int, BaseType) - Method in class org.scijava.util.AbstractPrimitiveArray
 
add(int, Boolean) - Method in class org.scijava.util.BoolArray
 
add(int, Byte) - Method in class org.scijava.util.ByteArray
 
add(int, Character) - Method in class org.scijava.util.CharArray
 
add(int, Double) - Method in class org.scijava.util.DoubleArray
 
add(int, Float) - Method in class org.scijava.util.FloatArray
 
add(int, Integer) - Method in class org.scijava.util.IntArray
 
add(T) - Method in class org.scijava.util.LastRecentlyUsed
Add a new newest entry.
add(int, Long) - Method in class org.scijava.util.LongArray
 
add(int, E) - Method in class org.scijava.util.ObjectArray
 
add(int, Short) - Method in class org.scijava.util.ShortArray
 
ADD_ASSIGN - Static variable in class org.scijava.parse.Operators
 
addAlias(String, Class<?>) - Method in class org.scijava.script.DefaultScriptService
 
addAlias(Class<?>) - Method in interface org.scijava.script.ScriptService
TODO
addAlias(String, Class<?>) - Method in interface org.scijava.script.ScriptService
TODO
addAll(int, Collection<? extends T>) - Method in class org.scijava.display.AbstractDisplay
 
addAll(Collection<? extends T>) - Method in class org.scijava.display.AbstractDisplay
 
addAll(Collection<? extends ModuleInfo>) - Method in class org.scijava.menu.ShadowMenu
Adds the given modules to the menu structure.
addAll(Collection<? extends E>) - Method in class org.scijava.object.ObjectIndex
 
addAll(Collection<? extends E>) - Method in class org.scijava.object.SortedObjectIndex
 
addAll(Collection<? extends C>) - Method in class org.scijava.table.AbstractTable
 
addAll(int, Collection<? extends C>) - Method in class org.scijava.table.AbstractTable
 
addAll(Collection<? extends C>) - Method in interface org.scijava.table.Table
Appends all of the columns in the specified collection to the end of the table, in the order that they are returned by the specified collection's iterator.
addAll(int, Collection<? extends C>) - Method in interface org.scijava.table.Table
Inserts all of the columns in the specified collection into this list at the specified position.
addAll(int, Collection<? extends Boolean>) - Method in class org.scijava.util.BoolArray
 
addAll(int, Collection<? extends Byte>) - Method in class org.scijava.util.ByteArray
 
addAll(int, Collection<? extends Character>) - Method in class org.scijava.util.CharArray
 
addAll(int, Collection<? extends Double>) - Method in class org.scijava.util.DoubleArray
 
addAll(int, Collection<? extends Float>) - Method in class org.scijava.util.FloatArray
 
addAll(int, Collection<? extends Integer>) - Method in class org.scijava.util.IntArray
 
addAll(Collection<? extends T>) - Method in class org.scijava.util.LastRecentlyUsed
 
addAll(int, Collection<? extends Long>) - Method in class org.scijava.util.LongArray
 
addAll(int, Collection<? extends E>) - Method in class org.scijava.util.ObjectArray
 
addAll(int, Collection<? extends Short>) - Method in class org.scijava.util.ShortArray
 
addArgDelimiter() - Method in interface org.scijava.script.CodeGenerator
Deprecated.
Adds delimiter character between arguments (typically a ',').
addArgDelimiter() - Method in class org.scijava.script.CodeGeneratorJava
Deprecated.
 
addArgument(ParameterObject) - Method in interface org.scijava.script.CodeGenerator
Deprecated.
 
addArgument(ParameterObject) - Method in class org.scijava.script.CodeGeneratorJava
Deprecated.
 
addAssign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
addAssign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.ADD_ASSIGN operator.
addChild(MavenProject) - Method in class org.scijava.minimaven.MavenProject
 
addChildren(List<? extends TreeNode<?>>) - Method in interface org.scijava.util.TreeNode
Adds the given list of children to this node.
addDisplayViewer(DisplayViewer<?>) - Method in class org.scijava.ui.DefaultUIService
 
addDisplayViewer(DisplayViewer<?>) - Method in interface org.scijava.ui.UIService
Registers the given viewer with the service.
addEventDispatcher(InternalFrameEventDispatcher) - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
addEventDispatcher(AWTInputEventDispatcher) - Method in class org.scijava.ui.swing.SwingApplicationFrame
 
addEventDispatcher(AWTInputEventDispatcher) - Method in class org.scijava.ui.swing.SwingStatusBar
 
addHotKey(int, JComponent, String, Action) - Static method in class org.scijava.ui.swing.StaticSwingUtils
Adds a control hot key to the containing window of a component.
addInput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo
 
addInput(String, Class<T>) - Method in interface org.scijava.module.MutableModule
Adds an input to the list.
addInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule
Adds an input to the list.
addInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo
Adds an input to the list.
addLater(LazyObjects<? extends E>) - Method in class org.scijava.object.ObjectIndex
Registers objects which will be created lazily as needed.
addLeafToMenu(ShadowMenu, M) - Method in class org.scijava.menu.AbstractMenuCreator
 
addLeafToMenu(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
addLeafToMenu(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
addLeafToTop(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator
 
addLeafToTop(ShadowMenu, MenuBar) - Method in class org.scijava.ui.awt.menu.AWTMenuBarCreator
 
addLeafToTop(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AWTMenuCreator
 
addLeafToTop(ShadowMenu, PopupMenu) - Method in class org.scijava.ui.awt.menu.AWTPopupMenuCreator
 
addLeafToTop(ShadowMenu, JMenuBar) - Method in class org.scijava.ui.swing.menu.SwingJMenuBarCreator
 
addLeafToTop(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.SwingJMenuCreator
 
addLeafToTop(ShadowMenu, JPopupMenu) - Method in class org.scijava.ui.swing.menu.SwingJPopupMenuCreator
 
addListener(EventHistoryListener) - Method in class org.scijava.event.DefaultEventHistory
 
addListener(EventHistoryListener) - Method in interface org.scijava.event.EventHistory
Adds an event history listener.
addLogListener(LogListener) - Method in class org.scijava.log.AbstractLogService
 
addLogListener(LogListener) - Method in class org.scijava.log.DefaultLogger
 
addLogListener(LogListener) - Method in interface org.scijava.log.Logger
Adds an item to the list of registered listeners.
addMain(String, String...) - Method in class org.scijava.main.DefaultMainService
 
addMain(String, String...) - Method in interface org.scijava.main.MainService
Registers a main class to be executed by MainService.execMains().
addModule(String) - Method in class org.scijava.minimaven.MavenProject
 
addModule(ModuleInfo) - Method in class org.scijava.module.DefaultModuleService
 
addModule(ModuleInfo) - Method in interface org.scijava.module.ModuleService
Manually registers a module with the module service.
addModuleCalled(String) - Method in interface org.scijava.script.CodeGenerator
Deprecated.
 
addModuleCalled(String) - Method in class org.scijava.script.CodeGeneratorJava
Deprecated.
 
addModules(Collection<? extends ModuleInfo>) - Method in class org.scijava.module.DefaultModuleService
 
addModules(Collection<? extends ModuleInfo>) - Method in interface org.scijava.module.ModuleService
Manually registers a list of modules with the module service.
addMultiProjectRoot(File) - Method in class org.scijava.minimaven.BuildEnvironment
 
addNonLeafToMenu(ShadowMenu, M) - Method in class org.scijava.menu.AbstractMenuCreator
 
addNonLeafToMenu(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
addNonLeafToMenu(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
addNonLeafToTop(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator
 
addNonLeafToTop(ShadowMenu, MenuBar) - Method in class org.scijava.ui.awt.menu.AWTMenuBarCreator
 
addNonLeafToTop(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AWTMenuCreator
 
addNonLeafToTop(ShadowMenu, PopupMenu) - Method in class org.scijava.ui.awt.menu.AWTPopupMenuCreator
 
addNonLeafToTop(ShadowMenu, JMenuBar) - Method in class org.scijava.ui.swing.menu.SwingJMenuBarCreator
 
addNonLeafToTop(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.SwingJMenuCreator
 
addNonLeafToTop(ShadowMenu, JPopupMenu) - Method in class org.scijava.ui.swing.menu.SwingJPopupMenuCreator
 
addObject(Object) - Method in class org.scijava.object.DefaultObjectService
 
addObject(Object) - Method in interface org.scijava.object.ObjectService
Registers an object with the object service.
addObservers(Runnable) - Method in class org.scijava.ui.swing.console.LogRecorder
The Runnable observer will be executed, after every new log message or text recorded.
addOperation(Runnable) - Method in class org.scijava.startup.DefaultStartupService
 
addOperation(Runnable) - Method in interface org.scijava.startup.StartupService
Adds an operation that will run as soon as the application starts up.
addOutput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo
 
addOutput(String, Class<T>) - Method in interface org.scijava.module.MutableModule
Adds an output to the list.
addOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule
Adds an output to the list.
addOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo
Adds an output to the list.
addOutputListener(OutputListener) - Method in interface org.scijava.console.ConsoleService
Adds a listener for output sent to stdout or stderr.
addOutputListener(OutputListener) - Method in class org.scijava.console.DefaultConsoleService
 
addOutputStream(OutputStream) - Method in class org.scijava.console.MultiOutputStream
Adds an output stream to those receiving this stream's output.
addParameter(String, Class<?>, Object) - Method in class org.scijava.script.InvocationObject
Deprecated.
 
addPlugin(PluginInfo<?>) - Method in class org.scijava.plugin.DefaultPluginService
 
addPlugin(PluginInfo<?>) - Method in interface org.scijava.plugin.PluginService
Manually registers a plugin with the plugin service.
addPlugins(Collection<T>) - Method in class org.scijava.plugin.DefaultPluginService
 
addPlugins(Collection<T>) - Method in interface org.scijava.plugin.PluginService
Manually registers plugins with the plugin service.
addPropertyChangeListener(PropertyChangeListener) - Method in interface org.scijava.ui.Arrangeable
 
addRecursively(List<String>, File, String, File, String, boolean) - Method in class org.scijava.minimaven.MavenProject
 
addResolver(Map<String, Object>) - Method in class org.scijava.grab.DefaultGrabService
 
addResolver(Map<String, Object>) - Method in interface org.scijava.grab.GrabService
 
addScriptDirectory(File) - Method in class org.scijava.script.DefaultScriptService
 
addScriptDirectory(File, MenuPath) - Method in class org.scijava.script.DefaultScriptService
 
addScriptDirectory(File) - Method in interface org.scijava.script.ScriptService
Adds a base directory to scan for scripts.
addScriptDirectory(File, MenuPath) - Method in interface org.scijava.script.ScriptService
Adds a base directory to scan for scripts, placing discovered scripts beneath the given menu path prefix.
addSeparatorToMenu(M) - Method in class org.scijava.menu.AbstractMenuCreator
 
addSeparatorToMenu(Menu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
addSeparatorToMenu(JMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
addSeparatorToTop(T) - Method in class org.scijava.menu.AbstractMenuCreator
 
addSeparatorToTop(MenuBar) - Method in class org.scijava.ui.awt.menu.AWTMenuBarCreator
 
addSeparatorToTop(Menu) - Method in class org.scijava.ui.awt.menu.AWTMenuCreator
 
addSeparatorToTop(PopupMenu) - Method in class org.scijava.ui.awt.menu.AWTPopupMenuCreator
 
addSeparatorToTop(JMenuBar) - Method in class org.scijava.ui.swing.menu.SwingJMenuBarCreator
 
addSeparatorToTop(JMenu) - Method in class org.scijava.ui.swing.menu.SwingJMenuCreator
 
addSeparatorToTop(JPopupMenu) - Method in class org.scijava.ui.swing.menu.SwingJPopupMenuCreator
 
addTiming(Object) - Method in class org.scijava.util.Timing
 
addTiming(long, Object) - Method in class org.scijava.util.Timing
 
addToEnd(T) - Method in class org.scijava.util.LastRecentlyUsed
Add a new oldest entry.
addToJarRecursively(JarOutputStream, File, String) - Method in class org.scijava.minimaven.MavenProject
 
addToList(E, List<E>, boolean) - Method in class org.scijava.object.ObjectIndex
 
addToList(E, List<E>, boolean) - Method in class org.scijava.object.SortedObjectIndex
 
addUI(UserInterface) - Method in class org.scijava.ui.DefaultUIService
 
addUI(String, UserInterface) - Method in class org.scijava.ui.DefaultUIService
 
addUI(UserInterface) - Method in interface org.scijava.ui.UIService
Adds the given UI to those managed by the service.
addUI(String, UserInterface) - Method in interface org.scijava.ui.UIService
Adds the given UI to those managed by the service.
addValue(boolean) - Method in class org.scijava.util.BoolArray
 
addValue(int, boolean) - Method in class org.scijava.util.BoolArray
 
addValue(byte) - Method in class org.scijava.util.ByteArray
 
addValue(int, byte) - Method in class org.scijava.util.ByteArray
 
addValue(char) - Method in class org.scijava.util.CharArray
 
addValue(int, char) - Method in class org.scijava.util.CharArray
 
addValue(double) - Method in class org.scijava.util.DoubleArray
 
addValue(int, double) - Method in class org.scijava.util.DoubleArray
 
addValue(float) - Method in class org.scijava.util.FloatArray
 
addValue(int, float) - Method in class org.scijava.util.FloatArray
 
addValue(int) - Method in class org.scijava.util.IntArray
 
addValue(int, int) - Method in class org.scijava.util.IntArray
 
addValue(long) - Method in class org.scijava.util.LongArray
 
addValue(int, long) - Method in class org.scijava.util.LongArray
 
addValue(E) - Method in class org.scijava.util.ObjectArray
 
addValue(int, E) - Method in class org.scijava.util.ObjectArray
 
addValue(short) - Method in class org.scijava.util.ShortArray
 
addValue(int, short) - Method in class org.scijava.util.ShortArray
 
addWidget(InputWidget<?, Panel>) - Method in class org.scijava.ui.awt.widget.AWTInputPanel
 
addWidget(InputWidget<?, JPanel>) - Method in class org.scijava.ui.swing.widget.SwingInputPanel
 
addWidget(InputWidget<?, W>) - Method in class org.scijava.widget.AbstractInputPanel
 
addWidget(InputWidget<?, W>) - Method in interface org.scijava.widget.InputPanel
Adds a widget to the panel.
adjustmentValueChanged(AdjustmentEvent) - Method in class org.scijava.ui.awt.widget.AWTNumberWidget
 
adjustmentValueChanged(AdjustmentEvent) - Method in class org.scijava.ui.swing.widget.SwingNumberWidget
 
advance(long) - Method in interface org.scijava.io.handle.StreamHandle
Increments the handle's offset by the given amount.
ALICEBLUE - Static variable in class org.scijava.util.Colors
 
allocate(FileChannel, FileChannel.MapMode, long, int) - Method in class org.scijava.io.nio.DefaultNIOService
 
allocate(FileChannel, FileChannel.MapMode, long, int) - Method in interface org.scijava.io.nio.NIOService
Allocates or maps the desired file data into memory.
allocate(long...) - Static method in class org.scijava.util.ArrayUtils
Allocates a 1-dimensional byte array matching the product of the given sizes.
ALTR_TMPDIR - Static variable in class org.scijava.nativelib.BaseJniExtractor
 
alwaysLog(int, Object, Throwable) - Method in class org.scijava.log.AbstractLogService
 
alwaysLog(int, Object, Throwable) - Method in class org.scijava.log.DefaultLogger
 
alwaysLog(int, Object, Throwable) - Method in interface org.scijava.log.Logger
Logs a message with an exception.
ANALYZE_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
ANALYZE_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
ANALYZE_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
AND_ASSIGN - Static variable in class org.scijava.parse.Operators
 
andAssign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
andAssign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.AND_ASSIGN operator.
annotation() - Method in class org.scijava.annotations.IndexItem
Obtains the annotation values.
AnnotationCombiner - Class in org.scijava.annotations
Combines annotation indexes from all JAR files on the classpath.
AnnotationCombiner() - Constructor for class org.scijava.annotations.AnnotationCombiner
 
AnnotationProcessor - Class in org.scijava.annotations
The annotation processor for use with Java 8 and earlier.
AnnotationProcessor() - Constructor for class org.scijava.annotations.AnnotationProcessor
 
ANTIQUEWHITE - Static variable in class org.scijava.util.Colors
 
app() - Method in class org.scijava.AbstractGateway
 
App - Interface in org.scijava.app
Metadata about a SciJava-based application, used by the AppService.
app() - Method in interface org.scijava.Gateway
Gets this application context's AppService.
AppAboutEvent - Class in org.scijava.platform.event
An event sent when the application is asked to open its about window.
AppAboutEvent() - Constructor for class org.scijava.platform.event.AppAboutEvent
 
append(String) - Method in class org.scijava.display.DefaultTextDisplay
 
append(String) - Method in interface org.scijava.display.TextDisplay
Add a line to the display.
append(StringBuilder, String) - Method in class org.scijava.minimaven.MavenProject
 
append(OutputEvent) - Method in interface org.scijava.ui.console.ConsolePane
Appends the given output to the console.
append(EventDetails) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
Appends the given event details to the text pane.
append(String) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
Appends the given HTML text string to the text pane.
append(OutputEvent) - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
append(String) - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
append(String) - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel
 
append(String) - Method in class org.scijava.util.StringMaker
 
append(String, Object) - Method in class org.scijava.util.StringMaker
 
append(String, Object, Object) - Method in class org.scijava.util.StringMaker
 
appendBytes(byte[], int) - Method in interface org.scijava.io.ByteBank
Appends the given bytes to the buffer
appendBytes(byte[], int, int) - Method in interface org.scijava.io.ByteBank
Appends the given bytes to the buffer
appendColumn() - Method in interface org.scijava.table.Table
Appends a column (with no header) to the table.
appendColumn(String) - Method in interface org.scijava.table.Table
Appends a column with the given header to the table.
appendColumns(int) - Method in interface org.scijava.table.Table
Appends a number of columns (with no headers) to the table.
appendColumns(String...) - Method in interface org.scijava.table.Table
Appends a block of columns with the given headers to the table.
appendContents(Collection<URL>, URL) - Static method in class org.scijava.util.FileUtils
Recursively adds contents from the referenced directory to an existing collection.
appendContents(Collection<URL>, URL, boolean, boolean) - Static method in class org.scijava.util.FileUtils
Add contents from the referenced directory to an existing collection.
appendRow() - Method in interface org.scijava.table.Table
Appends a row (with no header) to the table.
appendRow(String) - Method in interface org.scijava.table.Table
Appends a row with the given header to the table.
appendRows(int) - Method in interface org.scijava.table.Table
Appends a block of rows (with no headers) to the table.
appendRows(String...) - Method in interface org.scijava.table.Table
Appends a block of rows with the given headers to the table.
appEvent() - Method in class org.scijava.AbstractGateway
 
appEvent() - Method in interface org.scijava.Gateway
Gets this application context's AppEventService.
AppEventService - Interface in org.scijava.platform
Deprecated.
Use AppService and App instead.
AppFocusEvent - Class in org.scijava.platform.event
An event sent when the application has become the foreground app, or when it has resigned being the foreground app.
AppFocusEvent(boolean) - Constructor for class org.scijava.platform.event.AppFocusEvent
 
appHidden(AppHiddenEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
APPLICATION_MENU_ROOT - Static variable in annotation type org.scijava.plugin.Plugin
Deprecated.
APPLICATION_MENU_ROOT - Static variable in interface org.scijava.UIDetails
The default, application-level menu root.
ApplicationEvent - Class in org.scijava.platform.event
An event indicating an application-level occurrence.
ApplicationEvent() - Constructor for class org.scijava.platform.event.ApplicationEvent
 
ApplicationFrame - Interface in org.scijava.ui
Common interface for top-level application frames.
applySettings() - Method in class org.scijava.ui.swing.console.LogFormatter
 
AppMenusCreatedEvent - Class in org.scijava.platform.event
An event sent when the application has created and populated its menus.
AppMenusCreatedEvent(Object) - Constructor for class org.scijava.platform.event.AppMenusCreatedEvent
 
appMovedToBackground(AppForegroundEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
AppOpenFilesEvent - Class in org.scijava.platform.event
An event sent when the application is asked to re-open itself.
AppOpenFilesEvent(List<File>) - Constructor for class org.scijava.platform.event.AppOpenFilesEvent
 
AppPreferencesEvent - Class in org.scijava.platform.event
An event sent when the application is asked to open its preferences window.
AppPreferencesEvent() - Constructor for class org.scijava.platform.event.AppPreferencesEvent
 
AppPrintEvent - Class in org.scijava.platform.event
An event sent when the app is asked to print a list of files.
AppPrintEvent() - Constructor for class org.scijava.platform.event.AppPrintEvent
 
AppQuitEvent - Class in org.scijava.platform.event
An event sent when the application is asked to quit.
AppQuitEvent() - Constructor for class org.scijava.platform.event.AppQuitEvent
 
appRaisedToForeground(AppForegroundEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
appReOpened(AppReOpenedEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
AppReOpenEvent - Class in org.scijava.platform.event
An event sent when the application is asked to re-open itself.
AppReOpenEvent() - Constructor for class org.scijava.platform.event.AppReOpenEvent
 
AppScreenSleepEvent - Class in org.scijava.platform.event
An event sent when the displays attached to the system enter and exit power save sleep.
AppScreenSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppScreenSleepEvent
 
AppService - Interface in org.scijava.app
Interface for application-level functionality.
AppSleepEvent - Class in org.scijava.platform.event
An event sent when a device enters or exits power save sleep.
AppSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppSleepEvent
 
AppSystemSleepEvent - Class in org.scijava.platform.event
An event sent when the system enters and exits power save sleep.
AppSystemSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppSystemSleepEvent
 
appUnhidden(AppHiddenEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
AppUserSessionEvent - Class in org.scijava.platform.event
An event sent when the the user session has been changed via Fast User Switching.
AppUserSessionEvent(boolean) - Constructor for class org.scijava.platform.event.AppUserSessionEvent
 
AppUtils - Class in org.scijava.util
Useful methods for obtaining details of the SciJava application environment.
AppVisibleEvent - Class in org.scijava.platform.event
An event sent when the application has been hidden or shown.
AppVisibleEvent(boolean) - Constructor for class org.scijava.platform.event.AppVisibleEvent
 
AQUA - Static variable in class org.scijava.util.Colors
 
AQUAMARINE - Static variable in class org.scijava.util.Colors
 
AREA_STYLE - Static variable in interface org.scijava.widget.TextWidget
Widget style for text areas.
ARGBPlane - Class in org.scijava.ui
Represents a plane of ARGB pixel data.
ARGBPlane(int, int, int[]) - Constructor for class org.scijava.ui.ARGBPlane
 
ARGBPlane(int, int) - Constructor for class org.scijava.ui.ARGBPlane
 
args() - Method in interface org.scijava.main.MainService.Main
Gets the arguments to pass to the class's main method.
args(Type, Class<?>) - Static method in class org.scijava.util.Types
Gets the type arguments of a class/interface based on a subtype.
args(Class<?>, ParameterizedType) - Static method in class org.scijava.util.Types
Tries to determine the type arguments of a class/interface based on a super parameterized type's type arguments.
Arrangeable - Interface in org.scijava.ui
Arrangeable.
Arrangeable.Arrangement - Enum in org.scijava.ui
 
arrangeFramesHorizontally() - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
Arranges the frames as efficiently as possibly with preference for keeping horizontal size maximal.
arrangeFramesVertically() - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
Arranges the frames as efficiently as possibly with preference for keeping vertical size maximal.
array(T...) - Static method in class org.scijava.util.ArrayUtils
Creates an array of the given type, containing the specified values.
array(Class<?>) - Static method in class org.scijava.util.Types
Gets the array class corresponding to the given element type.
array(Class<?>, int) - Static method in class org.scijava.util.Types
Gets the array class corresponding to the given element type and dimensionality.
array(Type) - Static method in class org.scijava.util.Types
Gets the array type—which might be a Class or a GenericArrayType depending on the argument—corresponding to the given element type.
arrayContainsString(String[], String) - Method in class org.scijava.minimaven.MavenProject
 
ArrayConverters - Class in org.scijava.convert
Container class for all desired combinations of PrimitiveArrayUnwrapper and PrimitiveArrayWrapper implementations.
ArrayConverters() - Constructor for class org.scijava.convert.ArrayConverters
 
ArrayConverters.BoolArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.BoolArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.ByteArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.ByteArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.CharArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.CharArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.DoubleArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.DoubleArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.FloatArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.FloatArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.IntArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.IntArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.LongArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.LongArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.ShortArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.ShortArrayWrapper - Class in org.scijava.convert
 
ArrayUtils - Class in org.scijava.util
Utility class for working with arrays, particularly arrays of primitives.
artifactId - Variable in class org.scijava.minimaven.Coordinate
 
as(Object, Class<T>) - Method in class org.scijava.script.process.DirectiveScriptProcessor
Coerces some object into another object of the given type.
asBigDecimal(Number) - Static method in class org.scijava.util.NumberUtils
 
asBigInteger(Number) - Static method in class org.scijava.util.NumberUtils
 
asHTML(String) - Method in class org.scijava.plugins.text.markdown.MarkdownTextFormat
 
asHTML(String) - Method in class org.scijava.plugins.text.plain.PlainTextFormat
 
asHTML(File) - Method in class org.scijava.text.DefaultTextService
 
asHTML(String) - Method in interface org.scijava.text.TextFormat
Expresses the given text string in HTML format.
asHTML(File) - Method in interface org.scijava.text.TextService
Expresses the given text string as HTML.
asList(Object, Class<T>) - Method in class org.scijava.script.process.DirectiveScriptProcessor
Coerces some object into a list of objects of the given type.
asMap() - Method in interface org.scijava.parse.Items
Gets the parsed items as a map.
assertConsistency() - Method in class org.scijava.util.LastRecentlyUsed
 
assertThat(boolean, String) - Method in class org.scijava.parse.Position
Throws IllegalStateException if something goes wrong.
assign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
assign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.ASSIGN operator.
ASSIGN - Static variable in class org.scijava.parse.Operators
 
assignProperties(MenuEntry) - Method in class org.scijava.MenuEntry
Updates any default properties of this menu entry to match those of the given menu entry.
asType(ModuleItem<?>, Class<T>) - Method in class org.scijava.command.InteractiveCommand
 
attach(Object) - Method in class org.scijava.log.LogMessage
Attach object to this log message.
attachments() - Method in class org.scijava.log.LogMessage
Collection of objects that have been attached to this message with LogMessage.attach(Object).
Attr - Annotation Type in org.scijava.plugin
A name/value attribute pair, used to extend the @Plugin annotation.
AUTO_DOWNLOAD_SETTING - Static variable in class org.scijava.grab.DefaultGrabService
 
autocomplete(String, int, ScriptEngine) - Method in class org.scijava.script.AbstractAutoCompleter
 
autocomplete(String, ScriptEngine) - Method in interface org.scijava.script.AutoCompleter
 
autocomplete(String, int, ScriptEngine) - Method in interface org.scijava.script.AutoCompleter
 
AutoCompleter - Interface in org.scijava.script
Helper for generating autocomplete suggestions for code fragments.
AutoCompletionResult - Class in org.scijava.script
Data structure housing suggestions given by AutoCompleter helpers.
AutoCompletionResult(List<String>) - Constructor for class org.scijava.script.AutoCompletionResult
 
AutoCompletionResult(List<String>, int) - Constructor for class org.scijava.script.AutoCompletionResult
 
available(long) - Method in interface org.scijava.io.handle.DataHandle
Gets the number of bytes which can be read from, or written to, the data handle, bounded by the specified number of bytes.
available() - Method in class org.scijava.io.handle.DataHandleInputStream
 
AWTApplicationFrame - Class in org.scijava.ui.awt
AWT implementation of ApplicationFrame.
AWTApplicationFrame(String) - Constructor for class org.scijava.ui.awt.AWTApplicationFrame
 
AWTButtonWidget - Class in org.scijava.ui.awt.widget
An AWT widget that displays a button and invokes the callback of a parameter when the button is clicked.
AWTButtonWidget() - Constructor for class org.scijava.ui.awt.widget.AWTButtonWidget
 
AWTChoiceWidget - Class in org.scijava.ui.awt.widget
AWT implementation of multiple choice selector widget.
AWTChoiceWidget() - Constructor for class org.scijava.ui.awt.widget.AWTChoiceWidget
 
AWTClipboard - Class in org.scijava.ui.awt
AWT implementation of the SystemClipboard interface
AWTClipboard() - Constructor for class org.scijava.ui.awt.AWTClipboard
 
AWTColors - Class in org.scijava.ui.awt
Translates ImageJ ColorRGBs into AWT Colors.
AWTCursors - Class in org.scijava.ui.awt
Translates ImageJ MouseCursors into AWT Cursors.
AWTDragAndDropData - Class in org.scijava.ui.awt
AWT implementation of DragAndDropData.
AWTDragAndDropData(Context, Transferable) - Constructor for class org.scijava.ui.awt.AWTDragAndDropData
 
AWTDropTargetEventDispatcher - Class in org.scijava.ui.awt
Rebroadcasts AWT DropTargetEvents as ImageJ DragAndDropEvent s.
AWTDropTargetEventDispatcher(Display<?>, EventService) - Constructor for class org.scijava.ui.awt.AWTDropTargetEventDispatcher
Creates an AWT drag-and-drop event dispatcher for the given display.
AWTFileWidget - Class in org.scijava.ui.awt.widget
AWT implementation of file selector widget.
AWTFileWidget() - Constructor for class org.scijava.ui.awt.widget.AWTFileWidget
 
AWTImageTools - Class in org.scijava.ui.awt
Convenience methods for working with AWT Images.
AWTInputEventDispatcher - Class in org.scijava.ui.awt
Rebroadcasts AWT InputEvents as ImageJ InputEvents, translating KeyEvents into KyEvents, and MouseEvents into MsEvents.
AWTInputEventDispatcher(Display<?>) - Constructor for class org.scijava.ui.awt.AWTInputEventDispatcher
Creates an AWT input event dispatcher for the given display.
AWTInputEventDispatcher(Display<?>, EventService) - Constructor for class org.scijava.ui.awt.AWTInputEventDispatcher
Creates an AWT input event dispatcher for the given display.
AWTInputHarvester - Class in org.scijava.ui.awt.widget
AWTInputHarvester is an InputHarvester that collects input parameter values from the user using an AWTInputPanel dialog box.
AWTInputHarvester() - Constructor for class org.scijava.ui.awt.widget.AWTInputHarvester
 
AWTInputPanel - Class in org.scijava.ui.awt.widget
AWT implementation of InputPanel.
AWTInputPanel() - Constructor for class org.scijava.ui.awt.widget.AWTInputPanel
 
AWTInputWidget<T> - Class in org.scijava.ui.awt.widget
Common superclass for AWT-based input widgets.
AWTInputWidget() - Constructor for class org.scijava.ui.awt.widget.AWTInputWidget
 
AWTMenuBarCreator - Class in org.scijava.ui.awt.menu
Populates an AWT MenuBar with menu items from a ShadowMenu.
AWTMenuBarCreator() - Constructor for class org.scijava.ui.awt.menu.AWTMenuBarCreator
 
AWTMenuCreator - Class in org.scijava.ui.awt.menu
Populates an AWT Menu with menu items from a ShadowMenu.
AWTMenuCreator() - Constructor for class org.scijava.ui.awt.menu.AWTMenuCreator
 
AWTMessageWidget - Class in org.scijava.ui.awt.widget
AWT implementation of message widget.
AWTMessageWidget() - Constructor for class org.scijava.ui.awt.widget.AWTMessageWidget
 
AWTNumberWidget - Class in org.scijava.ui.awt.widget
AWT implementation of number chooser widget.
AWTNumberWidget() - Constructor for class org.scijava.ui.awt.widget.AWTNumberWidget
 
AWTObjectWidget - Class in org.scijava.ui.awt.widget
AWT implementation of object selector widget.
AWTObjectWidget() - Constructor for class org.scijava.ui.awt.widget.AWTObjectWidget
 
AWTPopupMenuCreator - Class in org.scijava.ui.awt.menu
Populates an AWT PopupMenu with menu items from a ShadowMenu.
AWTPopupMenuCreator() - Constructor for class org.scijava.ui.awt.menu.AWTPopupMenuCreator
 
AWTStatusBar - Class in org.scijava.ui.awt
AWT implementation of StatusBar.
AWTStatusBar(Context) - Constructor for class org.scijava.ui.awt.AWTStatusBar
 
AWTTextWidget - Class in org.scijava.ui.awt.widget
AWT implementation of text field widget.
AWTTextWidget() - Constructor for class org.scijava.ui.awt.widget.AWTTextWidget
 
AWTToggleWidget - Class in org.scijava.ui.awt.widget
AWT implementation of boolean toggle widget.
AWTToggleWidget() - Constructor for class org.scijava.ui.awt.widget.AWTToggleWidget
 
AWTToolBar - Class in org.scijava.ui.awt
Button bar with selectable tools, similar to ImageJ 1.x.
AWTToolBar(Context) - Constructor for class org.scijava.ui.awt.AWTToolBar
 
AWTUI - Class in org.scijava.ui.awt
AWT-based user interface for ImageJ.
AWTUI() - Constructor for class org.scijava.ui.awt.AWTUI
 
AWTWindowEventDispatcher - Class in org.scijava.ui.awt
Rebroadcasts AWT WindowEvents as ImageJ WinEvents.
AWTWindowEventDispatcher(Display<?>) - Constructor for class org.scijava.ui.awt.AWTWindowEventDispatcher
Creates an AWT window event dispatcher for the given display.
AWTWindowEventDispatcher(EventService) - Constructor for class org.scijava.ui.awt.AWTWindowEventDispatcher
Creates an AWT window event dispatcher for a null display, using the given event service.
AWTWindows - Class in org.scijava.ui.awt
Utility methods for working with AWT Windows.
AZURE - Static variable in class org.scijava.util.Colors
 

B

base64(byte[]) - Static method in class org.scijava.util.DigestUtils
Converts the given byte array to a base64 string.
BaseJniExtractor - Class in org.scijava.nativelib
 
BaseJniExtractor() - Constructor for class org.scijava.nativelib.BaseJniExtractor
 
BaseJniExtractor(Class<?>) - Constructor for class org.scijava.nativelib.BaseJniExtractor
 
BasicDetails - Interface in org.scijava
An interface defining basic characteristics including name, label, description, and a table of key/value pairs.
basicRangeCheck(long, long) - Method in interface org.scijava.io.ByteBank
Ensures that the requested range satisfies basic sanity criteria.
batchableInputs(ModuleInfo) - Method in interface org.scijava.batch.BatchService
A collection of input ModuleItems of the given ModuleInfo that are supported (i.e.
BatchInput - Class in org.scijava.batch.input
Currency for use with BatchInputProvider methods
BatchInput(Class<?>, ModuleItem<?>) - Constructor for class org.scijava.batch.input.BatchInput
 
BatchInput(Type, ModuleItem<?>) - Constructor for class org.scijava.batch.input.BatchInput
 
BatchInputProvider<I> - Interface in org.scijava.batch.input
 
BatchModuleSearchActionFactory - Class in org.scijava.batch
Search action for executing a SciJava module in batch mode.
BatchModuleSearchActionFactory() - Constructor for class org.scijava.batch.BatchModuleSearchActionFactory
 
BatchService - Interface in org.scijava.batch
 
BeanshellBindings - Class in org.scijava.plugins.scripting.beanshell
Local variables for Beanshell interpreters.
BeanshellBindings(Interpreter) - Constructor for class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
BeanshellScriptEngine - Class in org.scijava.plugins.scripting.beanshell
BeanShell support for SciJava.
BeanshellScriptEngine() - Constructor for class org.scijava.plugins.scripting.beanshell.BeanshellScriptEngine
 
BeanshellScriptLanguage - Class in org.scijava.plugins.scripting.beanshell
An adapter of the BeanShell interpreter to the SciJava scripting interface.
BeanshellScriptLanguage() - Constructor for class org.scijava.plugins.scripting.beanshell.BeanshellScriptLanguage
 
begin(ScriptInfo) - Method in class org.scijava.grab.script.process.GrabScriptProcessor
 
begin(ScriptInfo) - Method in class org.scijava.script.process.DirectiveScriptProcessor
 
begin(ScriptInfo) - Method in class org.scijava.script.process.ParameterScriptProcessor
 
begin(ScriptInfo) - Method in interface org.scijava.script.process.ScriptProcessor
 
begin(ScriptInfo) - Method in class org.scijava.script.process.ShebangScriptProcessor
 
BEIGE - Static variable in class org.scijava.util.Colors
 
best(String) - Static method in class org.scijava.util.DigestUtils
Gets the given string's best available hash.
best(byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the given byte array's best available hash.
bestBase64(String) - Static method in class org.scijava.util.DigestUtils
Gets the base64 string of the given string's best available hash.
bestBase64(byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the base64 string of the given byte array's best available hash.
bestHex(String) - Static method in class org.scijava.util.DigestUtils
Gets the hex string of the given string's best available hash.
bestHex(byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the hex string of the given byte array's best available hash.
BigIntegerToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.BigIntegerToBigDecimalConverter
 
BISQUE - Static variable in class org.scijava.util.Colors
 
BITWISE_AND - Static variable in class org.scijava.parse.Operators
 
BITWISE_OR - Static variable in class org.scijava.parse.Operators
 
bitwiseAnd(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseAnd(int, int) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseAnd(long, long) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseAnd(BigInteger, BigInteger) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseAnd(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.BITWISE_AND operator.
bitwiseOr(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseOr(int, int) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseOr(long, long) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseOr(BigInteger, BigInteger) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseOr(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.BITWISE_OR operator.
BLACK - Static variable in class org.scijava.util.Colors
 
BLANCHEDALMOND - Static variable in class org.scijava.util.Colors
 
BLUE - Static variable in class org.scijava.util.Colors
 
BLUEVIOLET - Static variable in class org.scijava.util.Colors
 
BoolArray - Class in org.scijava.util
An extensible array of boolean elements.
BoolArray() - Constructor for class org.scijava.util.BoolArray
Constructs an extensible array of booleans, backed by a fixed-size array.
BoolArray(int) - Constructor for class org.scijava.util.BoolArray
Constructs an extensible array of booleans, backed by a fixed-size array.
BoolArray(boolean[]) - Constructor for class org.scijava.util.BoolArray
Constructs an extensible array of booleans, backed by the given fixed-size array.
BoolArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.BoolArrayUnwrapper
 
BoolArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.BoolArrayWrapper
 
BoolColumn - Class in org.scijava.table
Efficient implementation of Column for boolean primitives.
BoolColumn() - Constructor for class org.scijava.table.BoolColumn
 
BoolColumn(String) - Constructor for class org.scijava.table.BoolColumn
 
BoolTable - Interface in org.scijava.table
A table of boolean values.
box(Class<T>) - Static method in class org.scijava.util.Types
Returns the non-primitive Class closest to the given type.
braces(Object[]) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
braces(Object[]) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.BRACES operator.
BRACES - Static variable in class org.scijava.parse.Operators
 
brackets(Object[]) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
brackets(Object[]) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.BRACKETS operator.
BRACKETS - Static variable in class org.scijava.parse.Operators
 
BROWN - Static variable in class org.scijava.util.Colors
 
BrowsableLocation - Interface in org.scijava.io.location
A Location that offers methods to browse other locations relative to it.
buffer - Variable in class org.scijava.minimaven.ReadInto
 
buffer - Variable in class org.scijava.util.LineOutputStream
 
buffer - Variable in class org.scijava.util.ReadInto
 
build() - Method in class org.scijava.minimaven.MavenProject
Compiles the project.
build(boolean) - Method in class org.scijava.minimaven.MavenProject
Compiles the project and optionally builds the .jar artifact.
build(boolean, boolean) - Method in class org.scijava.minimaven.MavenProject
Compiles the project and optionally builds the .jar artifact.
build(boolean, boolean, boolean) - Method in class org.scijava.minimaven.MavenProject
Compiles the project and optionally builds the .jar artifact.
buildAndInstall() - Method in class org.scijava.minimaven.MavenProject
Builds the artifact and installs it and its dependencies into ${imagej.app.directory}.
buildAndInstall(File) - Method in class org.scijava.minimaven.MavenProject
Builds the project an its dependencies, and installs them into the given ImageJ.app/ directory structure.
buildAndInstall(File, boolean) - Method in class org.scijava.minimaven.MavenProject
Builds the project an its dependencies, and installs them into the given ImageJ.app/ directory structure.
BuildEnvironment - Class in org.scijava.minimaven
The build environment of MiniMaven.
BuildEnvironment(PrintStream, boolean, boolean, boolean) - Constructor for class org.scijava.minimaven.BuildEnvironment
 
buildFromSource - Variable in class org.scijava.minimaven.MavenProject
 
buildJar() - Method in class org.scijava.minimaven.MavenProject
Builds the artifact.
buildNumber - Variable in class org.scijava.minimaven.SnapshotPOMHandler
 
buildPanel(InputPanel<P, W>, Module) - Method in class org.scijava.widget.AbstractInputHarvester
 
buildPanel(InputPanel<P, W>, Module) - Method in interface org.scijava.widget.InputHarvester
Populates the given InputPanel with widgets corresponding to the given Module instance.
built - Variable in class org.scijava.minimaven.MavenProject
 
BURLYWOOD - Static variable in class org.scijava.util.Colors
 
Button - Interface in org.scijava.widget
A interface used for marking input fields of plugin parameter dialogs as button fields.
ButtonWidget<U> - Interface in org.scijava.widget
Widget interface for buttons.
ByteArray - Class in org.scijava.util
An extensible array of byte elements.
ByteArray() - Constructor for class org.scijava.util.ByteArray
Constructs an extensible array of bytes, backed by a fixed-size array.
ByteArray(int) - Constructor for class org.scijava.util.ByteArray
Constructs an extensible array of bytes, backed by a fixed-size array.
ByteArray(byte[]) - Constructor for class org.scijava.util.ByteArray
Constructs an extensible array of bytes, backed by the given fixed-size array.
ByteArrayByteBank - Class in org.scijava.io
ByteBank implementation backed by a ByteArray.
ByteArrayByteBank() - Constructor for class org.scijava.io.ByteArrayByteBank
ByteArrayByteBank(int) - Constructor for class org.scijava.io.ByteArrayByteBank
Creates a ByteArrayByteBank with the specified initial capacity.
ByteArrayByteBank(byte[]) - Constructor for class org.scijava.io.ByteArrayByteBank
Creates a ByteArrayByteBank that wraps the provided byte array.
ByteArrayByteBank(ByteArray) - Constructor for class org.scijava.io.ByteArrayByteBank
Creates a ByteArrayByteBank that wraps the specified ByteArray.
ByteArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.ByteArrayUnwrapper
 
ByteArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.ByteArrayWrapper
 
ByteBank - Interface in org.scijava.io
A ByteBank is a self-growing buffer over arbitrary bytes.
ByteBufferByteBank - Class in org.scijava.io.nio
A ByteBank backed by a ByteBuffer.
ByteBufferByteBank() - Constructor for class org.scijava.io.nio.ByteBufferByteBank
 
ByteBufferByteBank(Function<Integer, ByteBuffer>) - Constructor for class org.scijava.io.nio.ByteBufferByteBank
 
ByteBufferByteBank(Function<Integer, ByteBuffer>, int) - Constructor for class org.scijava.io.nio.ByteBufferByteBank
 
ByteBufferByteBank(int) - Constructor for class org.scijava.io.nio.ByteBufferByteBank
 
ByteColumn - Class in org.scijava.table
Efficient implementation of Column for byte primitives.
ByteColumn() - Constructor for class org.scijava.table.ByteColumn
 
ByteColumn(String) - Constructor for class org.scijava.table.ByteColumn
 
Bytes - Class in org.scijava.util
Useful methods for reading, writing, decoding and converting bytes and byte arrays.
bytes(String) - Static method in class org.scijava.util.DigestUtils
Converts the given string to a byte array.
bytes(int) - Static method in class org.scijava.util.DigestUtils
Converts the given integer into a byte array.
BytesHandle - Class in org.scijava.io.handle
BytesHandle() - Constructor for class org.scijava.io.handle.BytesHandle
 
BytesLocation - Class in org.scijava.io.location
Location backed by a ByteBank.
BytesLocation(ByteBank) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by the specified ByteBank.
BytesLocation(int) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by a ByteArrayByteBank with the specified initial capacity, but with a reported size of 0.
BytesLocation(ByteArray) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by a ByteArrayByteBank that wraps the specified ByteArray.
BytesLocation(byte[]) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by a ByteArrayByteBank which wraps the specified array.
BytesLocation(byte[], int, int) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by a ByteArrayByteBank with the specified initial capacity and the provided data.
ByteTable - Interface in org.scijava.table
A table of byte-precision integer values.
ByteToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToBigDecimalConverter
 
ByteToBigIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToBigIntegerConverter
 
ByteToDoubleConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToDoubleConverter
 
ByteToFloatConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToFloatConverter
 
ByteToIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToIntegerConverter
 
ByteToLongConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToLongConverter
 
ByteToShortConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToShortConverter
 

C

cacheAndReturn(String, MavenProject) - Method in class org.scijava.minimaven.MavenProject
 
cacheAnnotatedObjects(Class<?>, Query) - Static method in class org.scijava.util.ClassUtils
This method scans the provided class, its superclasses and interfaces for all supported Annotation : AnnotatedElement pairs.
cachedLocation(Location) - Method in class org.scijava.download.DiskLocationCache
 
cachedLocation(Location) - Method in interface org.scijava.download.LocationCache
Gets the cache location of a given data source.
CacheService - Interface in org.scijava.cache
Base interface for cache services in SciJava
CADETBLUE - Static variable in class org.scijava.util.Colors
 
call(String[], boolean) - Method in class org.scijava.minimaven.JavaCompiler
 
call(String[], boolean, boolean) - Method in class org.scijava.minimaven.JavaCompiler
 
call() - Method in class org.scijava.module.ModuleRunner
 
callback(Module) - Method in class org.scijava.module.AbstractModuleItem
 
callback(Module) - Method in interface org.scijava.module.ModuleItem
Invokes this item's callback function, if any, on the given module.
callback() - Method in class org.scijava.widget.DefaultWidgetModel
 
callback() - Method in interface org.scijava.widget.WidgetModel
Executes the callback associated with this widget's associated input.
callbacks() - Method in class org.scijava.script.ScriptInfo
Gets the list of routines which should be invoked each time the script is about to execute.
CallingClassUtils - Class in org.scijava.log
Utility class for getting the calling class of a method.
canAssign(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils
canAssign(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils
canCache(Location) - Method in class org.scijava.download.DiskLocationCache
 
canCache(Location) - Method in interface org.scijava.download.LocationCache
Gets whether the given location can be cached by this cache.
canCancel() - Method in class org.scijava.command.CommandInfo
 
canCancel() - Method in class org.scijava.command.DynamicCommandInfo
 
canCancel() - Method in interface org.scijava.module.ModuleInfo
Gets whether the module condones cancellation.
canCast(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils
canCast(Object, Class<?>) - Static method in class org.scijava.util.ClassUtils
canCast(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils
canCast(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils
cancel(String) - Method in interface org.scijava.Cancelable
Cancels the operation execution, with the given reason for doing so.
cancel() - Method in class org.scijava.command.CommandModule
Cancels the command, undoing the effects of any CommandModule.preview() calls.
cancel(String) - Method in class org.scijava.command.CommandModule
 
cancel(String) - Method in class org.scijava.command.ContextCommand
Cancels the command execution, with the given reason for doing so.
cancel(String) - Method in class org.scijava.command.DynamicCommand
 
cancel() - Method in class org.scijava.command.InteractiveCommand
 
cancel(String) - Method in class org.scijava.command.ModuleCommand
 
cancel() - Method in interface org.scijava.command.Previewable
Does whatever is necessary upon cancelation to reset things back to before the operation was executed.
cancel() - Method in class org.scijava.module.AbstractModule
 
cancel() - Method in interface org.scijava.module.Module
Performs necessary cleanup in response to cancellation of the module execution.
cancel(String) - Method in class org.scijava.module.process.AbstractPreprocessorPlugin
 
cancel() - Method in class org.scijava.options.OptionsPlugin
 
cancel() - Method in class org.scijava.plugins.commands.debug.ParamAssignOrder
 
cancel(String) - Method in class org.scijava.task.DefaultTask
 
cancel(String) - Method in class org.scijava.ui.AbstractInputHarvesterPlugin
 
Cancelable - Interface in org.scijava
An operation that can be canceled.
canConvert(ConversionRequest) - Method in class org.scijava.convert.AbstractConverter
 
canConvert(Object, Type) - Method in class org.scijava.convert.AbstractConverter
 
canConvert(Object, Class<?>) - Method in class org.scijava.convert.AbstractConverter
 
canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.AbstractConverter
 
canConvert(Class<?>, Type) - Method in class org.scijava.convert.AbstractConverter
Deprecated.
canConvert(Object, Class<?>) - Method in class org.scijava.convert.CastingConverter
 
canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.CastingConverter
 
canConvert(ConversionRequest) - Method in interface org.scijava.convert.Converter
Checks whether a given ConversionRequest can be processed, by converting the desired ConversionRequest.sourceClass() to its ConversionRequest.destClass() or ConversionRequest.destType().
canConvert(Object, Type) - Method in interface org.scijava.convert.Converter
Checks whether the given object's type can be converted to the specified type.
canConvert(Object, Class<?>) - Method in interface org.scijava.convert.Converter
Checks whether the given object's type can be converted to the specified type.
canConvert(Class<?>, Type) - Method in interface org.scijava.convert.Converter
canConvert(Class<?>, Class<?>) - Method in interface org.scijava.convert.Converter
canConvert(Class<?>, Type) - Method in class org.scijava.convert.DefaultConverter
Deprecated.
canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.DefaultConverter
Deprecated.
canConvert(ConversionRequest) - Method in class org.scijava.convert.NullConverter
 
canConvert(Object, Type) - Method in class org.scijava.convert.NullConverter
 
canConvert(Object, Class<?>) - Method in class org.scijava.convert.NullConverter
 
canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.NullConverter
 
canConvert(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils
canConvert(Object, Class<?>) - Static method in class org.scijava.util.ClassUtils
canConvert(Class<?>, Type) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
canConvert(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
canConvert(Object, Type) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
canConvert(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
canDisplay(Class<?>) - Method in class org.scijava.display.AbstractDisplay
 
canDisplay(Class<?>) - Method in interface org.scijava.display.Display
Tests whether the display is capable of visualizing objects of the given class.
canDisplay(Object) - Method in interface org.scijava.display.Display
Tests whether the display is capable of visualizing the given object.
canDisplay(Class<?>) - Method in class org.scijava.table.DefaultTableDisplay
 
canHandleFile(File) - Method in class org.scijava.script.ScriptLanguageIndex
 
canHandleFile(String) - Method in class org.scijava.script.ScriptLanguageIndex
 
canHandleFile(File) - Method in interface org.scijava.script.ScriptService
TODO
canHandleFile(String) - Method in interface org.scijava.script.ScriptService
TODO
canPreview() - Method in class org.scijava.command.CommandInfo
 
canPreview() - Method in class org.scijava.command.DynamicCommandInfo
 
canPreview() - Method in interface org.scijava.module.ModuleInfo
Gets whether the module supports previews.
canProvide(ModuleItem<?>) - Method in interface org.scijava.batch.input.BatchInputProvider
Check if a given ModuleItem can be populated by this input provider.
canProvide(ModuleItem<?>) - Method in class org.scijava.batch.input.FileBatchInputProvider
 
canRunHeadless() - Method in class org.scijava.command.CommandInfo
 
canRunHeadless() - Method in interface org.scijava.module.ModuleInfo
Gets whether the module condones headless execution.
canRunHeadless() - Method in class org.scijava.script.ScriptInfo
 
canView(Display<?>) - Method in class org.scijava.ui.headless.HeadlessDisplayViewer
 
canView(Display<?>) - Method in interface org.scijava.ui.viewer.DisplayViewer
Returns true if an instance of this display viewer can view the given display.
canView(Display<?>) - Method in class org.scijava.ui.viewer.table.AbstractTableDisplayViewer
 
canView(Display<?>) - Method in interface org.scijava.ui.viewer.text.TextDisplayViewer
 
capacity() - Method in class org.scijava.util.AbstractPrimitiveArray
Gets the current capacity of the backing array.
capacity() - Method in interface org.scijava.util.PrimitiveArray
Gets the current capacity of the backing array.
cast(Object, Class<T>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
cast(Object, Class<T>) - Static method in class org.scijava.util.ConversionUtils
cast(Object, Class<T>) - Static method in class org.scijava.util.Types
Casts the given object to the specified type, or null if the types are incompatible.
CastingConverter - Class in org.scijava.convert
Minimal Converter implementation to do direct casting.
CastingConverter() - Constructor for class org.scijava.convert.CastingConverter
 
cdata(String) - Method in class org.scijava.util.XML
Obtains the CDATA identified by the given XPath expression.
cdata(Node) - Static method in class org.scijava.util.XML
Gets the CData beneath the given node.
cdata(Element, String) - Static method in class org.scijava.util.XML
Gets the CData beneath the given element's specified child.
centerWindow(Window) - Static method in class org.scijava.ui.awt.AWTWindows
Centers the given window on the screen.
centerWindow(Window, Window) - Static method in class org.scijava.ui.awt.AWTWindows
Centers the given window within the specified parent window.
centerWindow(Rectangle, Window) - Static method in class org.scijava.ui.awt.AWTWindows
Centers the given window within the specified bounds.
ch(CharSequence) - Method in class org.scijava.parse.Position
 
ch(CharSequence, int) - Method in class org.scijava.parse.Position
 
changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
 
changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.widget.SwingTextWidget
 
changeSetting(LogFormatter.Field, boolean) - Method in class org.scijava.ui.swing.console.LogFormatter
 
characters(char[], int, int) - Method in class org.scijava.minimaven.AbstractPOMHandler
 
CharArray - Class in org.scijava.util
An extensible array of char elements.
CharArray() - Constructor for class org.scijava.util.CharArray
Constructs an extensible array of chars, backed by a fixed-size array.
CharArray(int) - Constructor for class org.scijava.util.CharArray
Constructs an extensible array of chars, backed by a fixed-size array.
CharArray(char[]) - Constructor for class org.scijava.util.CharArray
Constructs an extensible array of chars, backed by the given fixed-size array.
CharArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.CharArrayUnwrapper
 
CharArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.CharArrayWrapper
 
charAt(int) - Method in class org.scijava.parse.SubSequence
 
CharColumn - Class in org.scijava.table
Efficient implementation of Column for char primitives.
CharColumn() - Constructor for class org.scijava.table.CharColumn
 
CharColumn(String) - Constructor for class org.scijava.table.CharColumn
 
CharTable - Interface in org.scijava.table
A table of char values.
CHARTREUSE - Static variable in class org.scijava.util.Colors
 
check - Variable in class org.scijava.swing.checkboxtree.CheckBoxNodePanel
 
check(D, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
Throws IllegalArgumentException if (data, display) pair is incompatible.
check(boolean) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
check(File) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
checkBounds(int) - Method in class org.scijava.util.AbstractPrimitiveArray
Checks that the index is less than the size of the array.
CheckBoxNodeData - Class in org.scijava.swing.checkboxtree
A tree node user object, for use with a JTree, that tracks whether it is checked.
CheckBoxNodeData(String, boolean) - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodeData
 
CheckBoxNodeEditor - Class in org.scijava.swing.checkboxtree
A TreeCellEditor for check box tree nodes.
CheckBoxNodeEditor(JTree) - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodeEditor
 
CheckBoxNodePanel - Class in org.scijava.swing.checkboxtree
Helper class defining Swing components for check box node renderer UI.
CheckBoxNodePanel() - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodePanel
 
CheckBoxNodeRenderer - Class in org.scijava.swing.checkboxtree
A TreeCellRenderer for check box tree nodes.
CheckBoxNodeRenderer() - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodeRenderer
 
checkDirectory(File) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
checkDirectory(File, File, long) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
CheckInputsPreprocessor - Class in org.scijava.module.process
A preprocessor plugin that does a final check of input parameters, complaining if any required ones are null.
CheckInputsPreprocessor() - Constructor for class org.scijava.module.process.CheckInputsPreprocessor
 
checkJar(File) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
checkObject(Object) - Method in class org.scijava.display.AbstractDisplay
 
checkParentTag(String, String, String) - Method in class org.scijava.minimaven.MavenProject
 
checkReadPos(long, long) - Method in interface org.scijava.io.ByteBank
Check if we can read from the specified range
CheckSezpoz - Class in org.scijava.util
Deprecated.
checksum() - Method in class org.scijava.download.MultiWriteHandle
 
checksum() - Method in interface org.scijava.io.handle.DataHandle
Gets a "fast" checksum which succinctly represents the contents of the data stream.
checkUpToDate(boolean) - Method in class org.scijava.minimaven.MavenProject
 
checkWritePos(long, long) - Method in interface org.scijava.io.ByteBank
Check if we can write to the specified range
child(String) - Method in interface org.scijava.io.location.BrowsableLocation
Obtains a location with the given name, for whom this location is the parent.
child(String) - Method in class org.scijava.io.location.FileLocation
 
child(int) - Method in class org.scijava.parse.SyntaxTree
 
children() - Method in interface org.scijava.io.location.BrowsableLocation
Obtains a collection of locations for whom this location is the parent.
children() - Method in class org.scijava.io.location.FileLocation
 
children - Variable in class org.scijava.minimaven.MavenProject
 
children() - Method in class org.scijava.util.DefaultTreeNode
 
children() - Method in interface org.scijava.util.TreeNode
Gets the node's children.
CHOCOLATE - Static variable in class org.scijava.util.Colors
 
ChoiceWidget<U> - Interface in org.scijava.widget
Widget interface for multiple choice selectors.
chooseFile(File, String) - Method in class org.scijava.ui.awt.AWTUI
 
chooseFile(File, String) - Method in class org.scijava.ui.DefaultUIService
 
chooseFile(String, File, String) - Method in class org.scijava.ui.DefaultUIService
 
chooseFile(String, File, String) - Method in class org.scijava.ui.headless.HeadlessUI
 
chooseFile(File, String) - Method in class org.scijava.ui.swing.AbstractSwingUI
 
chooseFile(File, String) - Method in interface org.scijava.ui.UIService
Prompts the user to choose a file.
chooseFile(String, File, String) - Method in interface org.scijava.ui.UIService
Prompts the user to choose a file.
chooseFile(File, String) - Method in interface org.scijava.ui.UserInterface
Prompts the user to choose a file.
chooseFile(String, File, String) - Method in interface org.scijava.ui.UserInterface
Prompts the user to choose a file.
chooseFiles(File, File[], FileFilter, String) - Method in class org.scijava.ui.DefaultUIService
 
chooseFiles(File, List<File>, FileFilter, String) - Method in class org.scijava.ui.DefaultUIService
 
chooseFiles(File, File[], FileFilter, String) - Method in class org.scijava.ui.swing.AbstractSwingUI
 
chooseFiles(File, File[], FileFilter, String) - Method in interface org.scijava.ui.UIService
Prompts the user to select one or multiple files.
chooseFiles(File, List<File>, FileFilter, String) - Method in interface org.scijava.ui.UIService
Prompts the user to select one or multiple files.
chooseFiles(File, File[], FileFilter, String) - Method in interface org.scijava.ui.UserInterface
Prompts the user to choose a list of files.
chooseFiles(File, List<File>, FileFilter, String) - Method in interface org.scijava.ui.UserInterface
Prompts the user to choose a list of files.
clampToRange(Class<?>, Number, Number, Number) - Static method in class org.scijava.util.NumberUtils
 
classifier - Variable in class org.scijava.minimaven.Coordinate
 
className() - Method in class org.scijava.annotations.IndexItem
Returns the name of the annotated class.
className() - Method in interface org.scijava.main.MainService.Main
Gets the name of the class containing the main method to run.
ClassUtils - Class in org.scijava.util
Useful methods for working with Class objects and primitive types.
clean() - Method in class org.scijava.minimaven.MavenProject
 
clean(File) - Method in class org.scijava.minimaven.MavenProject
 
cleanup() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle
Clean up data structures after a handle has been closed in the AbstractHigherOrderHandle.close() method.
cleanup() - Method in class org.scijava.io.handle.ReadBufferDataHandle
 
cleanup() - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
clear() - Method in class org.scijava.display.AbstractDisplay
 
clear() - Method in class org.scijava.event.DefaultEventHistory
 
clear() - Method in interface org.scijava.event.EventHistory
Clears the recorded event history.
clear() - Method in class org.scijava.io.ByteArrayByteBank
 
clear() - Method in interface org.scijava.io.ByteBank
Clears the buffer
clear() - Method in class org.scijava.io.DefaultRecentFileService
 
clear() - Method in class org.scijava.io.nio.ByteBufferByteBank
 
clear() - Method in interface org.scijava.io.RecentFileService
Clears the list of recent files.
clear() - Method in class org.scijava.menu.ShadowMenu
 
clear() - Method in class org.scijava.object.ObjectIndex
 
clear() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
clear() - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
clear() - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
clear() - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
clear(Class<?>) - Method in class org.scijava.prefs.DefaultPrefService
 
clear(String, String) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
clear(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
clear(Class<?>) - Method in interface org.scijava.prefs.PrefService
Deletes all of the given Class's keys from persistent storage.
clear(String) - Method in interface org.scijava.prefs.PrefService
clear(String, String) - Method in interface org.scijava.prefs.PrefService
clear(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
clear() - Method in interface org.scijava.table.Table
Removes all data (including row and column headers) from the table.
clear() - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
Clears the text pane.
clear() - Method in class org.scijava.ui.swing.console.ConsolePanel
 
clear() - Method in class org.scijava.ui.swing.console.LoggingPanel
 
clear() - Method in class org.scijava.ui.swing.console.LogRecorder
 
clear() - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
clear() - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
clear() - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel
 
clear() - Method in class org.scijava.util.AbstractPrimitiveArray
 
clear() - Method in class org.scijava.util.LastRecentlyUsed
Empties the data structure.
clear(Class<?>) - Static method in class org.scijava.util.Prefs
Deprecated.
 
clear(String) - Static method in class org.scijava.util.Prefs
Deprecated.
Clears the node.
clear(Preferences, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
clearAll() - Method in class org.scijava.prefs.DefaultPrefService
 
clearAll() - Method in interface org.scijava.prefs.PrefService
Deletes all information from the data store.
clearAll() - Static method in class org.scijava.util.Prefs
Deprecated.
Clears everything.
clearParameters() - Method in class org.scijava.module.AbstractModuleInfo
Clears input and output parameters.
clearParameters() - Method in class org.scijava.script.ScriptInfo
 
ClearRecent - Class in org.scijava.plugins.commands.io
Clears the list of recently opened files.
ClearRecent() - Constructor for class org.scijava.plugins.commands.io.ClearRecent
 
clearStatus() - Method in class org.scijava.app.DefaultStatusService
 
clearStatus() - Method in interface org.scijava.app.StatusService
Clears the status message.
ClojureBindings - Class in org.scijava.plugins.scripting.clojure
A Bindings wrapper around Clojure's local variables.
ClojureBindings() - Constructor for class org.scijava.plugins.scripting.clojure.ClojureBindings
 
ClojureScriptEngine - Class in org.scijava.plugins.scripting.clojure
A Clojure interpreter.
ClojureScriptEngine() - Constructor for class org.scijava.plugins.scripting.clojure.ClojureScriptEngine
 
ClojureScriptLanguage - Class in org.scijava.plugins.scripting.clojure
An adapter of the Clojure interpreter to the SciJava scripting interface.
ClojureScriptLanguage() - Constructor for class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
clone() - Method in class org.scijava.util.MersenneTwisterFast
 
close() - Method in class org.scijava.annotations.legacy.LegacyReader
 
close() - Method in class org.scijava.console.MultiOutputStream
 
close() - Method in class org.scijava.display.AbstractDisplay
 
close() - Method in interface org.scijava.display.Display
Closes the display and disposes its resources.
close() - Method in class org.scijava.download.MultiWriteHandle
 
close() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle
 
close() - Method in class org.scijava.io.handle.BytesHandle
 
close() - Method in class org.scijava.io.handle.DataHandleInputStream
 
close() - Method in class org.scijava.io.handle.DataHandleOutputStream
 
close() - Method in class org.scijava.io.handle.DummyHandle
 
close() - Method in class org.scijava.io.handle.FileHandle
 
close() - Method in interface org.scijava.io.handle.StreamHandle
 
Close - Class in org.scijava.plugins.commands.display
Closes the active display.
Close() - Constructor for class org.scijava.plugins.commands.display.Close
 
close() - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
close() - Method in class org.scijava.ui.swing.viewer.SwingDisplayWindow
 
close() - Method in interface org.scijava.ui.viewer.DisplayWindow
 
close() - Method in class org.scijava.util.LineOutputStream
Flushes the current line buffer if any bytes are left in it.
CloseAll - Class in org.scijava.plugins.commands.display
Closes all displays.
CloseAll() - Constructor for class org.scijava.plugins.commands.display.CloseAll
 
CloseConfirmable - Interface in org.scijava.ui
Interface for UI components that require the user to deal with changed state before the component can be closed.
closeLine(SourceDataLine) - Method in class org.scijava.util.TunePlayer
 
closeOnEOF - Variable in class org.scijava.util.ReadInto
 
CodeGenerator - Interface in org.scijava.script
Deprecated.
To be removed in SciJava Common 3.0.0.
CodeGeneratorJava - Class in org.scijava.script
Deprecated.
To be removed in SciJava Common 3.0.0.
CodeGeneratorJava() - Constructor for class org.scijava.script.CodeGeneratorJava
Deprecated.
 
CodeRunner - Interface in org.scijava.run
A plugin which extends the RunService's execution handling.
colon(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
colon(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.COLON operator.
COLON - Static variable in class org.scijava.parse.Operators
 
ColorRGB - Class in org.scijava.util
A color with red, green and blue color components.
ColorRGB(int, int, int) - Constructor for class org.scijava.util.ColorRGB
 
ColorRGB(String) - Constructor for class org.scijava.util.ColorRGB
Parses a color from the given string.
ColorRGBA - Class in org.scijava.util
A color with red, green, blue and alpha color components.
ColorRGBA(int, int, int, int) - Constructor for class org.scijava.util.ColorRGBA
 
Colors - Class in org.scijava.util
Predefined ColorRGB objects and related utility methods.
ColorWidget<U> - Interface in org.scijava.widget
Widget interface for color choosers.
Column<T> - Interface in org.scijava.table
A column of data of a Table.
COLUMN_COUNT - Static variable in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
combine(File) - Method in class org.scijava.annotations.AnnotationCombiner
Reads in annotations from all available resources and combines them.
combine() - Method in class org.scijava.util.CombineAnnotations
Deprecated.
combine(File) - Method in interface org.scijava.util.Combiner
Combines a collection of items and writes the result to the provided directory.
combine(File) - Method in class org.scijava.util.ServiceCombiner
 
CombineAnnotations - Class in org.scijava.util
Deprecated.
Use AnnotationCombiner instead.
CombineAnnotations() - Constructor for class org.scijava.util.CombineAnnotations
Deprecated.
Combiner - Interface in org.scijava.util
Interface for combining structurally-delicate items (such as annotations) which need to be unified to a single output.
command() - Method in class org.scijava.AbstractGateway
 
Command - Interface in org.scijava.command
Command is a plugin that is executable.
command() - Method in interface org.scijava.Gateway
Gets this application context's CommandService.
CommandCodeRunner - Class in org.scijava.command.run
Runs the given Command class.
CommandCodeRunner() - Constructor for class org.scijava.command.run.CommandCodeRunner
 
CommandFinder - Class in org.scijava.ui.swing.commands
A plugin to display the CommandFinderPanel in a dialog.
CommandFinder() - Constructor for class org.scijava.ui.swing.commands.CommandFinder
 
CommandFinderPanel - Class in org.scijava.ui.swing.commands
A panel that allows the user to search for SciJava commands.
CommandFinderPanel(ModuleService, String) - Constructor for class org.scijava.ui.swing.commands.CommandFinderPanel
 
CommandFinderPanel.CommandTableModel - Class in org.scijava.ui.swing.commands
 
commandHelp() - Method in class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
commandHelp() - Method in interface org.scijava.plugins.scripting.matlab.MATLABService
Builds a complete usage message by querying the MATLABCommands.help() method of all available commands.
CommandInfo - Class in org.scijava.command
A collection of metadata about a particular Command.
CommandInfo(String) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object.
CommandInfo(String, Plugin) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object.
CommandInfo(Class<? extends Command>) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object.
CommandInfo(Class<? extends Command>, Plugin) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object.
CommandInfo(PluginInfo<Command>) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object describing the same command as the given PluginInfo.
CommandInfo(PluginInfo<Command>, String, Class<? extends Command>, Plugin) - Constructor for class org.scijava.command.CommandInfo
 
CommandModule - Class in org.scijava.command
Module adapter class for working with a Command instance.
CommandModule(CommandInfo) - Constructor for class org.scijava.command.CommandModule
Creates a command module for the given PluginInfo.
CommandModule(CommandInfo, Command) - Constructor for class org.scijava.command.CommandModule
Creates a command module for the given CommandInfo, around the specified Command instance.
CommandModuleItem<T> - Class in org.scijava.command
ModuleItem implementation describing an input or output of a command.
CommandModuleItem(ModuleInfo, Field) - Constructor for class org.scijava.command.CommandModuleItem
 
CommandService - Interface in org.scijava.command
Interface for service that keeps track of available commands.
commandService() - Method in class org.scijava.platform.DefaultPlatformService
 
commandService() - Method in interface org.scijava.platform.PlatformService
 
commandsList - Variable in class org.scijava.ui.swing.commands.CommandFinderPanel
 
CommandTableModel(List<ModuleInfo>, String) - Constructor for class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
compare(Prioritized, Prioritized) - Static method in class org.scijava.Priority
Compares two Prioritized objects.
compare(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils
Compares two Class objects using their fully qualified names.
compare(T, T) - Static method in class org.scijava.util.MiscUtils
Compares two comparable objects, even if one or both of them are null.
compare(T, T, boolean) - Static method in class org.scijava.util.MiscUtils
Compares two comparable objects, even if one or both of them are null.
compare(String, String) - Static method in class org.scijava.util.VersionUtils
Compares two version strings.
compareTo(ShadowMenu) - Method in class org.scijava.menu.ShadowMenu
 
compareTo(MavenProject) - Method in class org.scijava.minimaven.MavenProject
 
compareTo(Operator) - Method in class org.scijava.parse.Operator
 
compareTo(Prioritized) - Method in interface org.scijava.Prioritized
 
compareTo(Prioritized) - Method in interface org.scijava.UIDetails
 
compareTo(POM) - Method in class org.scijava.util.POM
 
compareVersion(String, String) - Static method in class org.scijava.minimaven.BuildEnvironment
 
compareVersions(String, String) - Static method in class org.scijava.util.POM
Compares two version strings.
compile(String) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
compile(Reader) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
compile(String) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles and runs the specified .java class.
compile(Reader) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles and runs the specified .java class.
compile(File) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles the specified .java file.
compile(File, Writer) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles the specified .java file.
CompileError(Object) - Constructor for exception org.scijava.minimaven.JavaCompiler.CompileError
 
complement(Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
complement(int) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
complement(long) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
complement(Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.COMPLEMENT operator.
COMPLEMENT - Static variable in class org.scijava.parse.Operators
 
component(Type) - Static method in class org.scijava.util.Types
Gets the component type of the given array type, or null if not an array.
configure(PlatformService) - Method in class org.scijava.platform.AbstractPlatform
 
configure(PlatformService) - Method in interface org.scijava.platform.Platform
Activates and configures the platform.
configure(PlatformService) - Method in class org.scijava.plugins.platforms.macos.MacOSPlatform
 
configure() - Method in interface org.scijava.tool.Tool
Occurs when the user right clicks this tool's icon.
confirmClose() - Method in interface org.scijava.ui.CloseConfirmable
 
console() - Method in class org.scijava.AbstractGateway
 
console() - Method in interface org.scijava.Gateway
Gets this application context's ConsoleService.
ConsoleArgument - Interface in org.scijava.console
A plugin which extends an application's command line argument handling.
ConsolePane<C> - Interface in org.scijava.ui.console
A panel which displays stdout and stderr console output.
ConsolePanel - Class in org.scijava.ui.swing.console
ConsolePanel is a JPanel holding a JTextArea.
ConsolePanel(Context) - Constructor for class org.scijava.ui.swing.console.ConsolePanel
 
ConsoleService - Interface in org.scijava.console
Interface for service that manages interaction with the console.
ConsoleUtils - Class in org.scijava.console
Deprecated.
Use alternatives instead (see individual method docs).
ConsoleUtils() - Constructor for class org.scijava.console.ConsoleUtils
Deprecated.
 
consume() - Method in class org.scijava.event.SciJavaEvent
 
contains(Object) - Method in class org.scijava.display.AbstractDisplay
 
contains(Object) - Method in class org.scijava.menu.ShadowMenu
 
contains(Object) - Method in class org.scijava.object.ObjectIndex
 
contains(Object) - Method in class org.scijava.object.SortedObjectIndex
 
contains(Object) - Method in interface org.scijava.table.Column
 
contains(Object) - Method in interface org.scijava.table.Table
Gets whether the table contains the given column.
contains(byte[], byte) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(boolean[], boolean) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(char[], char) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(double[], double) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(float[], float) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(int[], int) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(long[], long) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(short[], short) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(Object[], Object) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(boolean) - Method in class org.scijava.util.BoolArray
 
contains(Object) - Method in class org.scijava.util.BoolArray
 
contains(byte) - Method in class org.scijava.util.ByteArray
 
contains(Object) - Method in class org.scijava.util.ByteArray
 
contains(char) - Method in class org.scijava.util.CharArray
 
contains(Object) - Method in class org.scijava.util.CharArray
 
contains(double) - Method in class org.scijava.util.DoubleArray
 
contains(Object) - Method in class org.scijava.util.DoubleArray
 
contains(float) - Method in class org.scijava.util.FloatArray
 
contains(Object) - Method in class org.scijava.util.FloatArray
 
contains(int) - Method in class org.scijava.util.IntArray
 
contains(Object) - Method in class org.scijava.util.IntArray
 
contains(IntCoords) - Method in class org.scijava.util.IntRect
Tests whether the given coordinates lie within the rectangle.
contains(Object) - Method in class org.scijava.util.LastRecentlyUsed
 
contains(long) - Method in class org.scijava.util.LongArray
 
contains(Object) - Method in class org.scijava.util.LongArray
 
contains(Object) - Method in class org.scijava.util.ObjectArray
 
contains(RealCoords) - Method in class org.scijava.util.RealRect
Tests whether the given coordinates lie within the rectangle.
contains(short) - Method in class org.scijava.util.ShortArray
 
contains(Object) - Method in class org.scijava.util.ShortArray
 
containsAll(Collection<?>) - Method in class org.scijava.display.AbstractDisplay
 
containsAll(Collection<?>) - Method in class org.scijava.menu.ShadowMenu
 
containsAll(Collection<?>) - Method in class org.scijava.object.ObjectIndex
 
containsAll(Collection<?>) - Method in class org.scijava.object.SortedObjectIndex
 
containsAll(Collection<?>) - Method in interface org.scijava.table.Column
 
containsAll(Collection<?>) - Method in interface org.scijava.table.Table
Returns true if the table contains all of the columns of the specified collection.
containsAll(Collection<?>) - Method in class org.scijava.util.BoolArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.ByteArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.CharArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.DoubleArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.FloatArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.IntArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.LastRecentlyUsed
 
containsAll(Collection<?>) - Method in class org.scijava.util.LongArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.ObjectArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.ShortArray
 
containsKey(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
containsKey(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
containsKey(Object) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
containsKey(Object) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
containsProject(String, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
containsProject(Coordinate) - Method in class org.scijava.minimaven.BuildEnvironment
 
containsTypeVars(Type) - Static method in class org.scijava.util.Types
Learn, recursively, whether any of the type parameters associated with type are bound to variables.
containsValue(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
containsValue(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
containsValue(Object) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
containsValue(Object) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
context() - Method in class org.scijava.AbstractContextual
 
context() - Method in class org.scijava.command.CommandModule
 
context() - Method in class org.scijava.command.DynamicCommand
 
Context - Class in org.scijava
Top-level SciJava application context, which initializes and maintains a list of services.
Context() - Constructor for class org.scijava.Context
Creates a new SciJava application context with all available services.
Context(boolean) - Constructor for class org.scijava.Context
Creates a new SciJava application context.
Context(boolean, boolean) - Constructor for class org.scijava.Context
Creates a new SciJava application context.
Context(Class...) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
Context(Collection<Class<? extends Service>>) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
Context(Collection<Class<? extends Service>>, boolean) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
Context(PluginIndex) - Constructor for class org.scijava.Context
Creates a new SciJava application context with all available services from the specified PluginIndex.
Context(Collection<Class<? extends Service>>, PluginIndex) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
Context(Collection<Class<? extends Service>>, PluginIndex, boolean) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
context() - Method in interface org.scijava.Contextual
Gets the application context to which the object belongs.
context() - Method in class org.scijava.script.ScriptInfo
 
context() - Method in class org.scijava.script.ScriptModule
 
CONTEXT_MENU_ROOT - Static variable in annotation type org.scijava.plugin.Plugin
Deprecated.
Use a context-specific menu root string instead. This one is too general. There is no such thing as a "default context menu" since such a thing wouldn't be a context menu!
ContextCommand - Class in org.scijava.command
A command that knows its context.
ContextCommand() - Constructor for class org.scijava.command.ContextCommand
 
ContextDisposingEvent - Class in org.scijava.event
Event to be published just before disposing a context.
ContextDisposingEvent() - Constructor for class org.scijava.event.ContextDisposingEvent
 
Contextual - Interface in org.scijava
An object that belongs to a SciJava application context.
conversionBuffer() - Method in class org.scijava.io.handle.AbstractDataHandle
 
conversionBuffer() - Method in interface org.scijava.io.handle.DataHandle
 
ConversionRequest - Class in org.scijava.convert
Currency for use in Converter and ConvertService methods.
ConversionRequest(Object, Type) - Constructor for class org.scijava.convert.ConversionRequest
 
ConversionRequest(Type, Type) - Constructor for class org.scijava.convert.ConversionRequest
 
ConversionRequest(Object, Type, Type) - Constructor for class org.scijava.convert.ConversionRequest
 
ConversionUtils - Class in org.scijava.util
Deprecated.
convert() - Method in class org.scijava.AbstractGateway
 
convert(Object, Type) - Method in class org.scijava.convert.AbstractConverter
 
convert(ConversionRequest) - Method in class org.scijava.convert.AbstractConverter
 
convert(Object, Type) - Method in class org.scijava.convert.AbstractConvertService
 
convert(Object, Class<T>) - Method in class org.scijava.convert.AbstractConvertService
 
convert(ConversionRequest) - Method in class org.scijava.convert.AbstractConvertService
 
convert(Object, Class<T>) - Method in class org.scijava.convert.CastingConverter
 
convert(Object, Type) - Method in interface org.scijava.convert.Converter
As Converter.convert(Object, Class) but capable of creating and populating multi-element objects (Collections and array types).
convert(Object, Class<T>) - Method in interface org.scijava.convert.Converter
Converts the given object to an object of the specified type.
convert(ConversionRequest) - Method in interface org.scijava.convert.Converter
convert(Object, Type) - Method in interface org.scijava.convert.ConvertService
 
convert(Object, Class<T>) - Method in interface org.scijava.convert.ConvertService
 
convert(ConversionRequest) - Method in interface org.scijava.convert.ConvertService
 
convert(Object, Type) - Method in class org.scijava.convert.DefaultConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.DefaultConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.FileArrayToStringConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.FileToStringConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.StringToFileArrayConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.StringToFileConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.NullConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToBigDecimalConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToBigIntegerConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToDoubleConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToFloatConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToIntegerConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToLongConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.NumberToNumberConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToNumberConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToShortConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.PrimitiveArrayUnwrapper
 
convert(Object, Class<T>) - Method in class org.scijava.convert.PrimitiveArrayWrapper
 
convert(Object, Class<T>) - Static method in class org.scijava.util.ClassUtils
convert(Object, Type) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
convert(Object, Class<T>) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
convertData(DragAndDropData) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
convertData(DragAndDropData) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Converts the given DragAndDropData to the type of data object supported by this handler.
convertDataUnchecked(DragAndDropData) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
Converts the given data to this handler's native data type, without verifying compatibility first.
Converter<I,O> - Interface in org.scijava.convert
Extensible conversion Plugin for converting between classes and types.
convertObject(Object) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
convertObject(Object) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Converts the given object to the type of data object supported by this handler.
convertObjectUnchecked(Object) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
Converts the given object to this handler's native data type, without verifying compatibility first.
ConvertService - Interface in org.scijava.convert
Service for converting between types using an extensible plugin: Converter.
convertToEnum(String, Class<T>) - Static method in class org.scijava.util.ConversionUtils
Coordinate - Class in org.scijava.minimaven
TODO
Coordinate() - Constructor for class org.scijava.minimaven.Coordinate
 
Coordinate(String, String, String) - Constructor for class org.scijava.minimaven.Coordinate
 
Coordinate(String, String, String, String, boolean, String, String) - Constructor for class org.scijava.minimaven.Coordinate
Deprecated.
Coordinate(String, String, String, String, boolean, String, String, Set<String>) - Constructor for class org.scijava.minimaven.Coordinate
 
coordinate - Variable in class org.scijava.minimaven.MavenProject
 
copy(DataHandle<Location>, DataHandle<Location>) - Static method in class org.scijava.io.handle.DataHandles
Copies all bytes from the input to the output handle.
copy(DataHandle<Location>, DataHandle<Location>, Task) - Static method in class org.scijava.io.handle.DataHandles
Copies all bytes from the input to the output handle, reporting the progress to the provided task.
copy(DataHandle<Location>, DataHandle<Location>, int) - Static method in class org.scijava.io.handle.DataHandles
Copies up to length bytes from the input to the output handle.
copy(DataHandle<Location>, DataHandle<Location>, long, Task) - Static method in class org.scijava.io.handle.DataHandles
Copies up to length bytes from the input to the output handle, reporting the progress to the provided task.
copy(DataHandle<Location>, DataHandle<Location>, long, Task, int) - Static method in class org.scijava.io.handle.DataHandles
Copies up to length bytes from the input to the output handle, reporting the progress to the provided task.
copy(InputStream, File) - Static method in class org.scijava.minimaven.BuildEnvironment
 
copy(InputStream, OutputStream, boolean) - Static method in class org.scijava.minimaven.BuildEnvironment
 
copyArray() - Method in class org.scijava.util.AbstractPrimitiveArray
 
copyArray() - Method in interface org.scijava.util.PrimitiveArray
Returns a copy of the primitive-array array.
copyDependencies(File, boolean) - Method in class org.scijava.minimaven.MavenProject
Copy the runtime dependencies
copyFile(File, File) - Static method in class org.scijava.minimaven.BuildEnvironment
 
copySelectionToClipboard() - Method in class org.scijava.ui.swing.console.LoggingPanel
 
CORAL - Static variable in class org.scijava.util.Colors
 
CORNFLOWERBLUE - Static variable in class org.scijava.util.Colors
 
CORNSILK - Static variable in class org.scijava.util.Colors
 
count() - Method in class org.scijava.parse.SyntaxTree
 
create(SearchResult) - Method in class org.scijava.batch.BatchModuleSearchActionFactory
 
create(String) - Static method in class org.scijava.input.Accelerator
Creates an accelerator from the given string representation.
create(Class<P>) - Method in interface org.scijava.plugin.PTService
Creates an instance of the given plugin class.
create(Class<P>) - Method in interface org.scijava.plugin.SingletonService
 
create(D) - Method in interface org.scijava.plugin.WrapperService
Creates a new plugin instance wrapping the given associated data object.
createBindings() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
createBindings() - Method in class org.scijava.script.AbstractScriptEngine
 
createBindings() - Method in class org.scijava.script.AdaptedScriptEngine
 
createButton16(ImageIcon) - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
createButton16(ImageIcon, String) - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
createColumn(String) - Method in class org.scijava.table.AbstractTable
 
createColumn(String) - Method in class org.scijava.table.DefaultBoolTable
 
createColumn(String) - Method in class org.scijava.table.DefaultByteTable
 
createColumn(String) - Method in class org.scijava.table.DefaultCharTable
 
createColumn(String) - Method in class org.scijava.table.DefaultDoubleTable
 
createColumn(String) - Method in class org.scijava.table.DefaultFloatTable
 
createColumn(String) - Method in class org.scijava.table.DefaultGenericTable
 
createColumn(String) - Method in class org.scijava.table.DefaultIntTable
 
createColumn(String) - Method in class org.scijava.table.DefaultLongTable
 
createColumn(String) - Method in class org.scijava.table.DefaultShortTable
 
createConsoleMenu() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
createDisplay(Object) - Method in class org.scijava.display.DefaultDisplayService
 
createDisplay(String, Object) - Method in class org.scijava.display.DefaultDisplayService
 
createDisplay(Object) - Method in interface org.scijava.display.DisplayService
Creates a display for the given object, publishing a DisplayCreatedEvent to notify interested parties.
createDisplay(String, Object) - Method in interface org.scijava.display.DisplayService
Creates a display for the given object, publishing a DisplayCreatedEvent to notify interested parties.
createDisplayQuietly(Object) - Method in class org.scijava.display.DefaultDisplayService
 
createDisplayQuietly(Object) - Method in interface org.scijava.display.DisplayService
Creates a display for the given object, without publishing a DisplayCreatedEvent.
createDisplayWindow(Display<?>) - Method in class org.scijava.ui.awt.AWTUI
 
createDisplayWindow(Display<?>) - Method in class org.scijava.ui.headless.HeadlessUI
 
createDisplayWindow(Display<?>) - Method in class org.scijava.ui.swing.mdi.SwingMdiUI
 
createDisplayWindow(Display<?>) - Method in class org.scijava.ui.swing.sdi.SwingSDIUI
 
createDisplayWindow(Display<?>, EventService) - Static method in class org.scijava.ui.swing.sdi.SwingSDIUI
Utility method for creating SwingDisplayWindows.
createDisplayWindow(Display<?>) - Method in interface org.scijava.ui.UserInterface
Creates a new display window housing the given display, or null if not applicable.
createExactService(Class<S>) - Method in class org.scijava.service.ServiceHelper
Instantiates a service of the given class, registering it in the index.
createFileFilter(String) - Static method in class org.scijava.ui.swing.widget.SwingFileWidget
Creates a FileFilter that filters files and/or directories according to the given widget style.
createImage(int, int) - Static method in class org.scijava.ui.awt.AWTImageTools
Creates a BufferedImage compatible with the graphics environment.
createInputPanel() - Method in class org.scijava.ui.awt.widget.AWTInputHarvester
 
createInputPanel() - Method in class org.scijava.ui.swing.widget.SwingInputHarvester
 
createInputPanel() - Method in interface org.scijava.widget.InputHarvester
Constructs an empty InputPanel.
createInstance() - Method in class org.scijava.command.CommandInfo
 
createInstance() - Method in interface org.scijava.Instantiable
Creates an object.
createInstance(PluginInfo<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
createInstance() - Method in class org.scijava.plugin.PluginInfo
 
createInstance(PluginInfo<PT>) - Method in interface org.scijava.plugin.PluginService
Creates an instance of the given plugin.
createInstances(List<PluginInfo<PT>>) - Method in class org.scijava.plugin.DefaultPluginService
 
createInstances(List<PluginInfo<PT>>) - Method in interface org.scijava.plugin.PluginService
Creates an instance of each of the plugins on the given list.
createInstancesOfType(Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
createInstancesOfType(Class<PT>) - Method in interface org.scijava.plugin.PluginService
Creates one instance each of the available plugins of the given type.
createLeaf(ShadowMenu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
createLeaf(ShadowMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
createMenus(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator
 
createMenus(ShadowMenu, T) - Method in interface org.scijava.menu.MenuCreator
 
createMenus(MenuCreator<T>, T) - Method in interface org.scijava.menu.MenuService
Populates a UI-specific application menu structure.
createMenus(String, MenuCreator<T>, T) - Method in interface org.scijava.menu.MenuService
Populates a UI-specific menu structure.
createMenus() - Method in class org.scijava.ui.awt.AWTUI
 
createMenus() - Method in class org.scijava.ui.swing.AbstractSwingUI
Creates a JMenuBar from the master ShadowMenu structure.
createMenus(ShadowMenu, T) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
createModel(Number, Number, Number, Number) - Method in class org.scijava.ui.swing.widget.SpinnerNumberModelFactory
 
createModel(InputPanel<?, ?>, Module, ModuleItem<?>, List<?>) - Method in interface org.scijava.widget.WidgetService
Create a WidgetModel for the given module input.
createModule(Command) - Method in class org.scijava.command.CommandInfo
Instantiates the module described by this module info, around the specified existing command instance.
createModule() - Method in class org.scijava.command.CommandInfo
 
createModule(ModuleInfo) - Method in class org.scijava.module.DefaultModuleService
 
createModule() - Method in interface org.scijava.module.ModuleInfo
Instantiates the module described by this module info.
createModule(ModuleInfo) - Method in interface org.scijava.module.ModuleService
Creates an instance of the given module.
createModule() - Method in interface org.scijava.module.MutableModuleInfo
 
createModule() - Method in class org.scijava.script.ScriptInfo
 
createNonLeaf(ShadowMenu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
createNonLeaf(ShadowMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
createPath(File, String) - Static method in class org.scijava.test.TestUtils
Creates an empty file at the given path, creating intermediate directories as necessary.
createTask(String) - Method in class org.scijava.task.DefaultTaskService
 
createTask(String) - Method in interface org.scijava.task.TaskService
Creates a new, empty Task.
createTemporaryDirectory(String) - Static method in class org.scijava.test.TestUtils
Makes a temporary directory for use with unit tests.
createTemporaryDirectory(String, Class<?>) - Static method in class org.scijava.test.TestUtils
Makes a temporary directory for use with unit tests.
createTemporaryDirectory(String, Class<?>, String) - Static method in class org.scijava.test.TestUtils
Makes a temporary directory for use with unit tests.
createTemporaryDirectory(String) - Static method in class org.scijava.util.FileUtils
Creates a temporary directory.
createTemporaryDirectory(String, String) - Static method in class org.scijava.util.FileUtils
Creates a temporary directory.
createTemporaryDirectory(String, String, File) - Static method in class org.scijava.util.FileUtils
Creates a temporary directory.
createUI() - Method in class org.scijava.ui.AbstractUserInterface
Subclasses override to control UI creation.
createUI() - Method in class org.scijava.ui.awt.AWTUI
 
createUI() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
CRIMSON - Static variable in class org.scijava.util.Colors
 
CustomDrawnTool - Interface in org.scijava.tool
Tools that would like to define how they are drawn implement this interface.
CYAN - Static variable in class org.scijava.util.Colors
 

D

DARKBLUE - Static variable in class org.scijava.util.Colors
 
DARKCYAN - Static variable in class org.scijava.util.Colors
 
DARKGOLDENROD - Static variable in class org.scijava.util.Colors
 
DARKGRAY - Static variable in class org.scijava.util.Colors
 
DARKGREEN - Static variable in class org.scijava.util.Colors
 
DARKGREY - Static variable in class org.scijava.util.Colors
 
DARKKHAKI - Static variable in class org.scijava.util.Colors
 
DARKMAGENTA - Static variable in class org.scijava.util.Colors
 
DARKOLIVEGREEN - Static variable in class org.scijava.util.Colors
 
DARKORANGE - Static variable in class org.scijava.util.Colors
 
DARKORCHID - Static variable in class org.scijava.util.Colors
 
DARKRED - Static variable in class org.scijava.util.Colors
 
DARKSALMON - Static variable in class org.scijava.util.Colors
 
DARKSEAGREEN - Static variable in class org.scijava.util.Colors
 
DARKSLATEBLUE - Static variable in class org.scijava.util.Colors
 
DARKSLATEGRAY - Static variable in class org.scijava.util.Colors
 
DARKSLATEGREY - Static variable in class org.scijava.util.Colors
 
DARKTURQUOISE - Static variable in class org.scijava.util.Colors
 
DARKVIOLET - Static variable in class org.scijava.util.Colors
 
data() - Method in class org.scijava.util.DefaultTreeNode
 
data() - Method in interface org.scijava.util.TreeNode
Gets the data associated with the node.
DataHandle<L extends Location> - Interface in org.scijava.io.handle
A data handle is a plugin which provides both streaming and random access to bytes at a Location (e.g., files or arrays).
DataHandle.ByteOrder - Enum in org.scijava.io.handle
 
DataHandleInputStream<L extends Location> - Class in org.scijava.io.handle
InputStream backed by a DataHandle.
DataHandleInputStream(DataHandle<L>) - Constructor for class org.scijava.io.handle.DataHandleInputStream
Creates an input stream around the given DataHandle.
DataHandleOutputStream<L extends Location> - Class in org.scijava.io.handle
DataHandleOutputStream(DataHandle<L>) - Constructor for class org.scijava.io.handle.DataHandleOutputStream
Creates an output stream around the given DataHandle.
DataHandles - Class in org.scijava.io.handle
Utility methods for working with DataHandles.
DataHandleService - Interface in org.scijava.io.handle
Interface for low-level data I/O: reading and writing bytes using DataHandles.
DataOpenedEvent - Class in org.scijava.io.event
An event indicating that data has been opened from a source.
DataOpenedEvent(String, Object) - Constructor for class org.scijava.io.event.DataOpenedEvent
 
DataSavedEvent - Class in org.scijava.io.event
An event indicating that data has been saved to a destination.
DataSavedEvent(String, Object) - Constructor for class org.scijava.io.event.DataSavedEvent
 
DateWidget<U> - Interface in org.scijava.widget
Widget interface for dates.
deactivate() - Method in interface org.scijava.tool.Tool
Informs the tool that it is no longer active.
debug(Object) - Method in interface org.scijava.log.Logger
 
debug(Throwable) - Method in interface org.scijava.log.Logger
 
debug(Object, Throwable) - Method in interface org.scijava.log.Logger
 
DEBUG - Static variable in class org.scijava.log.LogLevel
 
DEBUG - Static variable in interface org.scijava.log.LogService
Deprecated.
debug - Variable in class org.scijava.minimaven.BuildEnvironment
 
debug() - Method in class org.scijava.script.ScriptREPL
 
DebugPostprocessor - Class in org.scijava.module.process
A postprocessor plugin that dumps parameter values to the log.
DebugPostprocessor() - Constructor for class org.scijava.module.process.DebugPostprocessor
 
DebugPreprocessor - Class in org.scijava.module.process
A preprocessor plugin that dumps information to the log.
DebugPreprocessor() - Constructor for class org.scijava.module.process.DebugPreprocessor
 
DebugUtils - Class in org.scijava.util
Useful methods for debugging programs.
decide(LoggingEvent) - Method in class org.scijava.config.logback.AbstractLevelsFilter
 
decode(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptLanguage
 
decode(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
decode(Object) - Method in class org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage
 
decode(Object) - Method in class org.scijava.plugins.scripting.jython.JythonScriptLanguage
 
decode(Object) - Method in class org.scijava.plugins.scripting.renjin.RenjinScriptLanguage
 
decode(Object) - Method in interface org.scijava.script.ScriptLanguage
Performs any necessary conversion of an encoded object retrieved from the language's script engine.
DEEPPINK - Static variable in class org.scijava.util.Colors
 
DEEPSKYBLUE - Static variable in class org.scijava.util.Colors
 
DEFAULT_BLOCK_SIZE - Static variable in interface org.scijava.io.handle.DataHandle
Default block size to use when searching through the stream.
DEFAULT_PAD_CHAR - Static variable in class org.scijava.util.StringUtils
 
DEFAULT_SEARCH_PATH - Static variable in class org.scijava.nativelib.NativeLibraryUtil
 
DEFAULT_SHORTENER_THRESHOLD - Static variable in class org.scijava.util.FileUtils
 
DEFAULT_WEIGHT - Static variable in class org.scijava.MenuEntry
 
DefaultAppEventService - Class in org.scijava.platform
Deprecated.
Use AppService and App instead.
DefaultAppEventService() - Constructor for class org.scijava.platform.DefaultAppEventService
Deprecated.
 
DefaultAppService - Class in org.scijava.app
Default service for application-level functionality.
DefaultAppService() - Constructor for class org.scijava.app.DefaultAppService
 
DefaultAutoCompleter - Class in org.scijava.script
Default implementation of AutoCompleter.
DefaultAutoCompleter(ScriptLanguage) - Constructor for class org.scijava.script.DefaultAutoCompleter
 
DefaultBoolTable - Class in org.scijava.table
Default implementation of BoolTable.
DefaultBoolTable() - Constructor for class org.scijava.table.DefaultBoolTable
Creates an empty boolean table.
DefaultBoolTable(int, int) - Constructor for class org.scijava.table.DefaultBoolTable
Creates a boolean table with the given row and column dimensions.
DefaultByteTable - Class in org.scijava.table
Default implementation of ByteTable.
DefaultByteTable() - Constructor for class org.scijava.table.DefaultByteTable
Creates an empty byte table.
DefaultByteTable(int, int) - Constructor for class org.scijava.table.DefaultByteTable
Creates a byte table with the given row and column dimensions.
DefaultCacheService - Class in org.scijava.cache
Trivial CacheService implementation.
DefaultCacheService() - Constructor for class org.scijava.cache.DefaultCacheService
 
DefaultCharTable - Class in org.scijava.table
Default implementation of CharTable.
DefaultCharTable() - Constructor for class org.scijava.table.DefaultCharTable
Creates an empty char table.
DefaultCharTable(int, int) - Constructor for class org.scijava.table.DefaultCharTable
Creates a char table with the given row and column dimensions.
DefaultColumn<T> - Class in org.scijava.table
Default implementation of Column.
DefaultColumn(Class<T>) - Constructor for class org.scijava.table.DefaultColumn
 
DefaultColumn(Class<T>, String) - Constructor for class org.scijava.table.DefaultColumn
 
DefaultCommandService - Class in org.scijava.command
Default service for working with Commands.
DefaultCommandService() - Constructor for class org.scijava.command.DefaultCommandService
 
DefaultConsoleService - Class in org.scijava.console
Default service for managing interaction with the console.
DefaultConsoleService() - Constructor for class org.scijava.console.DefaultConsoleService
 
DefaultConverter - Class in org.scijava.convert
Default Converter implementation.
DefaultConverter() - Constructor for class org.scijava.convert.DefaultConverter
 
DefaultConvertService - Class in org.scijava.convert
Default ConvertService implementation.
DefaultConvertService() - Constructor for class org.scijava.convert.DefaultConvertService
 
DefaultDataHandleService - Class in org.scijava.io.handle
Default implementation of DataHandleService.
DefaultDataHandleService() - Constructor for class org.scijava.io.handle.DefaultDataHandleService
 
DefaultDisplay - Class in org.scijava.display
Default display for objects, when no other displays are available.
DefaultDisplay() - Constructor for class org.scijava.display.DefaultDisplay
 
DefaultDisplayService - Class in org.scijava.display
Default service for working with Displays.
DefaultDisplayService() - Constructor for class org.scijava.display.DefaultDisplayService
 
DefaultDoubleTable - Class in org.scijava.table
Default implementation of DoubleTable.
DefaultDoubleTable() - Constructor for class org.scijava.table.DefaultDoubleTable
Creates an empty results table.
DefaultDoubleTable(int, int) - Constructor for class org.scijava.table.DefaultDoubleTable
Creates a results table with the given row and column dimensions.
DefaultDownloadService - Class in org.scijava.download
Default implementation of DownloadService.
DefaultDownloadService() - Constructor for class org.scijava.download.DefaultDownloadService
 
DefaultDragAndDropData - Class in org.scijava.ui.dnd
Default implementation of DragAndDropData, which provides a UI-agnostic way to bundle an object together with its MIME type.
DefaultDragAndDropData(Context, MIMEType, Object) - Constructor for class org.scijava.ui.dnd.DefaultDragAndDropData
 
DefaultDragAndDropService - Class in org.scijava.ui.dnd
Default service for handling drag and drop events.
DefaultDragAndDropService() - Constructor for class org.scijava.ui.dnd.DefaultDragAndDropService
 
DefaultEvaluator - Class in org.scijava.parse.eval
An expression evaluator for most standard operators with common built-in types (i.e.: Booleans, Strings and Numbers).
DefaultEvaluator() - Constructor for class org.scijava.parse.eval.DefaultEvaluator
 
DefaultEvaluator(ExpressionParser) - Constructor for class org.scijava.parse.eval.DefaultEvaluator
 
DefaultEventBus - Class in org.scijava.event
An EventService implementation for SciJava.
DefaultEventBus(ThreadService, LogService) - Constructor for class org.scijava.event.DefaultEventBus
 
DefaultEventHistory - Class in org.scijava.event
Default service for keeping a history of SciJava events.
DefaultEventHistory() - Constructor for class org.scijava.event.DefaultEventHistory
 
DefaultEventService - Class in org.scijava.event
Default service for publishing and subscribing to SciJava events.
DefaultEventService() - Constructor for class org.scijava.event.DefaultEventService
 
DefaultFloatTable - Class in org.scijava.table
Default implementation of FloatTable.
DefaultFloatTable() - Constructor for class org.scijava.table.DefaultFloatTable
Creates an empty float table.
DefaultFloatTable(int, int) - Constructor for class org.scijava.table.DefaultFloatTable
Creates a float table with the given row and column dimensions.
DefaultGenericTable - Class in org.scijava.table
Default implementation of GenericTable.
DefaultGenericTable() - Constructor for class org.scijava.table.DefaultGenericTable
Creates an empty table.
DefaultGenericTable(int, int) - Constructor for class org.scijava.table.DefaultGenericTable
Creates a table with the given row and column dimensions.
DefaultGrabService - Class in org.scijava.grab
Default implementation of GrabService.
DefaultGrabService() - Constructor for class org.scijava.grab.DefaultGrabService
 
DefaultInputService - Class in org.scijava.input
Default implementation of InputService.
DefaultInputService() - Constructor for class org.scijava.input.DefaultInputService
 
DefaultIntTable - Class in org.scijava.table
Default implementation of IntTable.
DefaultIntTable() - Constructor for class org.scijava.table.DefaultIntTable
Creates an empty int table.
DefaultIntTable(int, int) - Constructor for class org.scijava.table.DefaultIntTable
Creates a int table with the given row and column dimensions.
DefaultIOService - Class in org.scijava.io
Default implementation of IOService.
DefaultIOService() - Constructor for class org.scijava.io.DefaultIOService
 
DefaultJniExtractor - Class in org.scijava.nativelib
JniExtractor suitable for single application deployments per virtual machine
DefaultJniExtractor(Class<?>) - Constructor for class org.scijava.nativelib.DefaultJniExtractor
 
DefaultLocationService - Class in org.scijava.io.location
Default LocationService implementation.
DefaultLocationService() - Constructor for class org.scijava.io.location.DefaultLocationService
 
DefaultLogger - Class in org.scijava.log
Default implementation of Logger.
DefaultLogger(LogListener, LogSource, int) - Constructor for class org.scijava.log.DefaultLogger
 
DefaultLongTable - Class in org.scijava.table
Default implementation of LongTable.
DefaultLongTable() - Constructor for class org.scijava.table.DefaultLongTable
Creates an empty long table.
DefaultLongTable(int, int) - Constructor for class org.scijava.table.DefaultLongTable
Creates a long table with the given row and column dimensions.
DefaultMainService - Class in org.scijava.main
Default implementation of MainService.
DefaultMainService() - Constructor for class org.scijava.main.DefaultMainService
 
DefaultMATLABService - Class in org.scijava.plugins.scripting.matlab
Default MATLABService implementation.
DefaultMATLABService() - Constructor for class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
DefaultMenuService - Class in org.scijava.menu
Default service for keeping track of the application's menu structure.
DefaultMenuService() - Constructor for class org.scijava.menu.DefaultMenuService
 
DefaultModuleService - Class in org.scijava.module
Default service for keeping track of and executing available modules.
DefaultModuleService() - Constructor for class org.scijava.module.DefaultModuleService
 
DefaultMutableModule - Class in org.scijava.module
Default MutableModule implementation, intended for subclassing.
DefaultMutableModule() - Constructor for class org.scijava.module.DefaultMutableModule
 
DefaultMutableModule(MutableModuleInfo) - Constructor for class org.scijava.module.DefaultMutableModule
 
DefaultMutableModuleInfo - Class in org.scijava.module
Default MutableModuleInfo implementation.
DefaultMutableModuleInfo() - Constructor for class org.scijava.module.DefaultMutableModuleInfo
 
DefaultMutableModuleItem<T> - Class in org.scijava.module
Default MutableModuleItem implementation, for use with custom MutableModule implementations.
DefaultMutableModuleItem(Module, String, Class<T>) - Constructor for class org.scijava.module.DefaultMutableModuleItem
 
DefaultMutableModuleItem(ModuleInfo, String, Class<T>) - Constructor for class org.scijava.module.DefaultMutableModuleItem
 
DefaultMutableModuleItem(ModuleInfo, ModuleItem<T>) - Constructor for class org.scijava.module.DefaultMutableModuleItem
Creates a new module item with the same values as the given item.
defaultName() - Method in interface org.scijava.io.location.Location
Gets the default name used when no explicit name is assigned.
DefaultNIOService - Class in org.scijava.io.nio
Default service for working with the java.nio package, particularly NIO ByteBuffer objects.
DefaultNIOService() - Constructor for class org.scijava.io.nio.DefaultNIOService
 
DefaultObjectService - Class in org.scijava.object
Default service for keeping track of registered objects.
DefaultObjectService() - Constructor for class org.scijava.object.DefaultObjectService
 
DefaultOptionsService - Class in org.scijava.options
Default service for keeping track of the available options and their settings.
DefaultOptionsService() - Constructor for class org.scijava.options.DefaultOptionsService
 
DefaultParseService - Class in org.scijava.parse
Default service for parsing strings.
DefaultParseService() - Constructor for class org.scijava.parse.DefaultParseService
 
DefaultPlatform - Class in org.scijava.platform
A platform implementation for default handling of platform issues.
DefaultPlatform() - Constructor for class org.scijava.platform.DefaultPlatform
 
DefaultPlatformService - Class in org.scijava.platform
Default service for handling platform-specific deployment issues.
DefaultPlatformService() - Constructor for class org.scijava.platform.DefaultPlatformService
 
DefaultPluginFinder - Class in org.scijava.plugin
Default SciJava plugin discovery mechanism.
DefaultPluginFinder() - Constructor for class org.scijava.plugin.DefaultPluginFinder
 
DefaultPluginFinder(ClassLoader) - Constructor for class org.scijava.plugin.DefaultPluginFinder
 
DefaultPluginService - Class in org.scijava.plugin
Default service for keeping track of available plugins.
DefaultPluginService() - Constructor for class org.scijava.plugin.DefaultPluginService
 
DefaultPrefService - Class in org.scijava.prefs
Default PrefService implementation, which persists preferences to disk using the Preferences API.
DefaultPrefService() - Constructor for class org.scijava.prefs.DefaultPrefService
 
DefaultRecentFileService - Class in org.scijava.io
Default service for managing the Recently Used Files menu.
DefaultRecentFileService() - Constructor for class org.scijava.io.DefaultRecentFileService
 
DefaultRunService - Class in org.scijava.run
Default service for managing available CodeRunner plugins.
DefaultRunService() - Constructor for class org.scijava.run.DefaultRunService
 
DefaultScriptHeaderService - Class in org.scijava.script
Default ScriptHeaderService implementation.
DefaultScriptHeaderService() - Constructor for class org.scijava.script.DefaultScriptHeaderService
 
DefaultScriptInterpreter - Class in org.scijava.script
The default implementation of a ScriptInterpreter.
DefaultScriptInterpreter(PrefService, ScriptService, ScriptLanguage) - Constructor for class org.scijava.script.DefaultScriptInterpreter
DefaultScriptInterpreter(ScriptLanguage) - Constructor for class org.scijava.script.DefaultScriptInterpreter
Creates a new script interpreter for the given script language.
DefaultScriptInterpreter(ScriptLanguage, ScriptEngine) - Constructor for class org.scijava.script.DefaultScriptInterpreter
Creates a new script interpreter for the given script language, using the specified script engine.
DefaultScriptProcessorService - Class in org.scijava.script.process
Default implementation of ScriptProcessorService.
DefaultScriptProcessorService() - Constructor for class org.scijava.script.process.DefaultScriptProcessorService
 
DefaultScriptService - Class in org.scijava.script
Default service for working with scripts.
DefaultScriptService() - Constructor for class org.scijava.script.DefaultScriptService
 
DefaultShortTable - Class in org.scijava.table
Default implementation of ShortTable.
DefaultShortTable() - Constructor for class org.scijava.table.DefaultShortTable
Creates an empty short table.
DefaultShortTable(int, int) - Constructor for class org.scijava.table.DefaultShortTable
Creates a short table with the given row and column dimensions.
DefaultStartupService - Class in org.scijava.startup
Default implementation of StartupService.
DefaultStartupService() - Constructor for class org.scijava.startup.DefaultStartupService
 
DefaultStatusService - Class in org.scijava.app
Default service for status notifications.
DefaultStatusService() - Constructor for class org.scijava.app.DefaultStatusService
 
DefaultTableDisplay - Class in org.scijava.table
Default display for Tables, including DoubleTables.
DefaultTableDisplay() - Constructor for class org.scijava.table.DefaultTableDisplay
 
DefaultTableIOPlugin - Class in org.scijava.table
Plugin for reading/writing GenericTables.
DefaultTableIOPlugin() - Constructor for class org.scijava.table.DefaultTableIOPlugin
 
DefaultTask - Class in org.scijava.task
Default implementation of Task.
DefaultTask(ThreadService, EventService) - Constructor for class org.scijava.task.DefaultTask
Creates a new task.
DefaultTaskService - Class in org.scijava.task
Default implementation of TaskService.
DefaultTaskService() - Constructor for class org.scijava.task.DefaultTaskService
 
DefaultTextDisplay - Class in org.scijava.display
Default display for text.
DefaultTextDisplay() - Constructor for class org.scijava.display.DefaultTextDisplay
 
DefaultTextService - Class in org.scijava.text
Default service for working with text formats.
DefaultTextService() - Constructor for class org.scijava.text.DefaultTextService
 
DefaultThreadService - Class in org.scijava.thread
Default service for managing active threads.
DefaultThreadService() - Constructor for class org.scijava.thread.DefaultThreadService
 
DefaultToolService - Class in org.scijava.tool
Default service for keeping track of available tools, including which tool is active, and delegating UI events to the active tool.
DefaultToolService() - Constructor for class org.scijava.tool.DefaultToolService
 
DefaultTreeNode<T> - Class in org.scijava.util
Default implementation of TreeNode.
DefaultTreeNode(T, TreeNode<?>) - Constructor for class org.scijava.util.DefaultTreeNode
Creates a new tree node wrapping the given data, located in the tree beneath the specified parent.
DefaultUIService - Class in org.scijava.ui
Default service for handling SciJava user interfaces.
DefaultUIService() - Constructor for class org.scijava.ui.DefaultUIService
 
DefaultUncaughtExceptionHandler - Class in org.scijava.log
A handler for otherwise uncaught exceptions.
DefaultUncaughtExceptionHandler(LogService) - Constructor for class org.scijava.log.DefaultUncaughtExceptionHandler
 
defaultValue() - Method in class org.scijava.util.BoolArray
 
defaultValue() - Method in class org.scijava.util.ByteArray
 
defaultValue() - Method in class org.scijava.util.CharArray
 
defaultValue() - Method in class org.scijava.util.DoubleArray
 
defaultValue() - Method in class org.scijava.util.FloatArray
 
defaultValue() - Method in class org.scijava.util.IntArray
 
defaultValue() - Method in class org.scijava.util.LongArray
 
defaultValue() - Method in class org.scijava.util.ObjectArray
 
defaultValue() - Method in interface org.scijava.util.PrimitiveArray
 
defaultValue() - Method in class org.scijava.util.ShortArray
 
DefaultValuePreprocessor - Class in org.scijava.module.process
A preprocessor plugin that populates default parameter values.
DefaultValuePreprocessor() - Constructor for class org.scijava.module.process.DefaultValuePreprocessor
 
DefaultWelcomeService - Class in org.scijava.welcome
Default service for displaying the welcome greeting.
DefaultWelcomeService() - Constructor for class org.scijava.welcome.DefaultWelcomeService
 
DefaultWidgetModel - Class in org.scijava.widget
The backing data model for a particular InputWidget.
DefaultWidgetModel(Context, InputPanel<?, ?>, Module, ModuleItem<?>, List<?>) - Constructor for class org.scijava.widget.DefaultWidgetModel
 
DefaultWidgetService - Class in org.scijava.widget
Default service for managing available InputWidgets.
DefaultWidgetService() - Constructor for class org.scijava.widget.DefaultWidgetService
 
DELAY_IN_MICROSECONDS - Static variable in class org.scijava.util.MirrorWebsite
 
delete(int, int) - Method in class org.scijava.util.AbstractPrimitiveArray
Shifts the array to delete space starting at a specified index.
delete(int, int) - Method in interface org.scijava.util.PrimitiveArray
Shifts the array to delete space starting at a specified index.
deleteRecursively(File) - Static method in class org.scijava.util.FileUtils
Deletes a directory recursively.
DELIM - Static variable in class org.scijava.nativelib.NativeLibraryUtil
 
dependencies() - Method in class org.scijava.grab.DefaultGrabService
 
dependencies() - Method in interface org.scijava.grab.GrabService
Gets a table of dependencies which have previously been grabbed.
dependencies - Variable in class org.scijava.minimaven.MavenProject
 
dependencyManagement - Variable in class org.scijava.minimaven.MavenProject
 
Desktop - Interface in org.scijava.ui
Marker interface for MDI Desktop manager
destClass() - Method in class org.scijava.convert.ConversionRequest
 
destination() - Method in interface org.scijava.download.Download
 
destType() - Method in class org.scijava.convert.ConversionRequest
 
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.awt.AWTUI
 
DialogPrompt - Interface in org.scijava.ui
TODO
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.headless.HeadlessUI
 
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.swing.mdi.SwingMdiUI
 
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.swing.sdi.SwingSDIUI
 
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in interface org.scijava.ui.UserInterface
Creates a dialog prompter.
DialogPrompt.MessageType - Enum in org.scijava.ui
 
DialogPrompt.OptionType - Enum in org.scijava.ui
 
DialogPrompt.Result - Enum in org.scijava.ui
 
DialogPromptDemo - Class in org.scijava.ui.swing.commands
A demonstration of SciJava's UI-agnostic dialog prompt capabilities.
DialogPromptDemo() - Constructor for class org.scijava.ui.swing.commands.DialogPromptDemo
 
die(String) - Method in class org.scijava.parse.Position
Throws IllegalArgumentException when syntax is incorrect.
digest(String, byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the given byte array's hash value according to the specified algorithm.
DigestUtils - Class in org.scijava.util
Utility class for computing cryptographic hashes.
DIMGRAY - Static variable in class org.scijava.util.Colors
 
DIMGREY - Static variable in class org.scijava.util.Colors
 
DirectiveScriptProcessor - Class in org.scijava.script.process
Abstract base class for ScriptProcessor plugins that parse lines of the form #@directive(...) ....
DirectiveScriptProcessor(Predicate<String>) - Constructor for class org.scijava.script.process.DirectiveScriptProcessor
 
DIRECTORIES_ONLY - Static variable in interface org.scijava.widget.FileListWidget
Widget style to allow directory selection only
directory - Variable in class org.scijava.minimaven.MavenProject
 
DIRECTORY_STYLE - Static variable in interface org.scijava.widget.FileWidget
Widget style for directory chooser dialogs.
directoryCallback() - Method in class org.scijava.batch.FileScriptBatchProcessor
Count all applicable files and display them in the dialog message
directoryCallback() - Method in class org.scijava.batch.MenuScriptBatchProcessor
Count all applicable files and display them in the dialog message
DirectoryIndexer - Class in org.scijava.annotations
Indexes a directory of classes.
DirectoryIndexer() - Constructor for class org.scijava.annotations.DirectoryIndexer
 
DISABLE_CHECKSUMS_SETTING - Static variable in class org.scijava.grab.DefaultGrabService
 
discover() - Method in class org.scijava.plugin.PluginIndex
Adds all plugins discovered by the attached PluginFinder to this index, or does nothing if the attached PluginFinder is null.
discoverAnnotations(File, String, ClassLoader) - Method in class org.scijava.annotations.DirectoryIndexer
 
discoverJavac() - Static method in class org.scijava.minimaven.JavaCompiler
 
DiskLocationCache - Class in org.scijava.download
A file-based implementation of LocationCache.
DiskLocationCache() - Constructor for class org.scijava.download.DiskLocationCache
 
dispatchToEDT(Runnable) - Static method in class org.scijava.ui.swing.StaticSwingUtils
dispatchToEDTWait(Runnable) - Static method in class org.scijava.ui.swing.StaticSwingUtils
display() - Method in class org.scijava.AbstractGateway
 
display(Object) - Method in class org.scijava.display.AbstractDisplay
 
Display<T> - Interface in org.scijava.display
A display is a particular type of plugin intended to collect objects for visualization.
display(Object) - Method in interface org.scijava.display.Display
Displays the given object in this display.
display() - Method in interface org.scijava.Gateway
Gets this application context's DisplayService.
display(Object) - Method in class org.scijava.table.DefaultTableDisplay
 
Displayable - Interface in org.scijava.display
An interface used by classes that can draw on demand.
DisplayActivatedEvent - Class in org.scijava.display.event
An event indicating a display has become the active one.
DisplayActivatedEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayActivatedEvent
 
DisplayCreatedEvent - Class in org.scijava.display.event
An event indicating a new display has been created.
DisplayCreatedEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayCreatedEvent
 
DisplayDeletedEvent - Class in org.scijava.display.event
An event indicating a display has been deleted.
DisplayDeletedEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayDeletedEvent
 
DisplayEvent - Class in org.scijava.display.event
An event indicating something has happened to a Display.
DisplayEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayEvent
 
DisplayPanel - Interface in org.scijava.ui.viewer
The panel housing a particular Display.
DisplayPostprocessor - Class in org.scijava.display
Displays outputs upon completion of a module execution.
DisplayPostprocessor() - Constructor for class org.scijava.display.DisplayPostprocessor
 
DisplayService - Interface in org.scijava.display
Interface for service that tracks available Displays.
DisplayUpdatedEvent - Class in org.scijava.display.event
An event indicating a display has updated; e.g., an object has been added or removed.
DisplayUpdatedEvent(Display<?>, DisplayUpdatedEvent.DisplayUpdateLevel) - Constructor for class org.scijava.display.event.DisplayUpdatedEvent
 
DisplayUpdatedEvent.DisplayUpdateLevel - Enum in org.scijava.display.event
The display update level gives a hint about how much work needs to be done during the update.
DisplayViewer<T> - Interface in org.scijava.ui.viewer
A display viewer is a UI widget that shows a display to a user.
displayWelcome() - Method in class org.scijava.welcome.DefaultWelcomeService
 
displayWelcome() - Method in interface org.scijava.welcome.WelcomeService
Displays the welcome greeting.
DisplayWindow - Interface in org.scijava.ui.viewer
A user interface window associated with a Display, containing a DisplayPanel.
Disposable - Interface in org.scijava
An object that knows how to clean up after itself.
dispose() - Method in class org.scijava.console.DefaultConsoleService
 
dispose() - Method in class org.scijava.Context
 
dispose() - Method in interface org.scijava.Disposable
Performs any needed cleanup of the object's services, in preparation for the object being retired (e.g., to make garbage collection possible).
dispose() - Method in class org.scijava.event.DefaultEventService
 
dispose() - Method in class org.scijava.platform.DefaultPlatformService
 
dispose() - Method in class org.scijava.plugins.platforms.macos.MacOSPlatform
 
dispose() - Method in class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
dispose() - Method in class org.scijava.thread.DefaultThreadService
 
dispose() - Method in class org.scijava.ui.awt.AWTUI
 
dispose() - Method in class org.scijava.ui.DefaultUIService
 
dispose() - Method in class org.scijava.ui.headless.HeadlessUI
 
dispose() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
dispose() - Method in interface org.scijava.ui.viewer.DisplayViewer
 
div(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(int, int) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(long, long) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(float, float) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(double, double) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(BigInteger, BigInteger) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(BigDecimal, BigDecimal) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DIV operator.
DIV - Static variable in class org.scijava.parse.Operators
 
DIV_ASSIGN - Static variable in class org.scijava.parse.Operators
 
divAssign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
divAssign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DIV_ASSIGN operator.
DocumentSizeFilter - Class in org.scijava.ui.swing.widget
A DocumentFilter that limits maximum number of characters.
DocumentSizeFilter(int) - Constructor for class org.scijava.ui.swing.widget.DocumentSizeFilter
 
DODGERBLUE - Static variable in class org.scijava.util.Colors
 
done - Variable in class org.scijava.util.ReadInto
 
done() - Method in class org.scijava.util.ReadInto
 
doRefresh() - Method in class org.scijava.batch.SwingScriptInfoWidget
 
doRefresh() - Method in class org.scijava.ui.AbstractUIInputWidget
Performs the intended AbstractUIInputWidget.refreshWidget() operation.
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTButtonWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTChoiceWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTFileWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTMessageWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTNumberWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTObjectWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTTextWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTToggleWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingButtonWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingChoiceRadioWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingChoiceWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingColorWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingDateWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingFileListWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingMessageWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingNumberWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingObjectWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingTextWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingToggleWidget
 
dot(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
dot(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT operator.
DOT - Static variable in class org.scijava.parse.Operators
 
DOT_DIV - Static variable in class org.scijava.parse.Operators
 
DOT_DIV_ASSIGN - Static variable in class org.scijava.parse.Operators
 
DOT_MUL - Static variable in class org.scijava.parse.Operators
 
DOT_POW - Static variable in class org.scijava.parse.Operators
 
DOT_POW_ASSIGN - Static variable in class org.scijava.parse.Operators
 
DOT_RIGHT_DIV - Static variable in class org.scijava.parse.Operators
 
DOT_RIGHT_DIV_ASSIGN - Static variable in class org.scijava.parse.Operators
 
DOT_TRANSPOSE - Static variable in class org.scijava.parse.Operators
 
dotDiv(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
dotDiv(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_DIV operator.
dotDivAssign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
dotDivAssign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_DIV_ASSIGN operator.
dotMul(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
dotMul(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_MUL operator.
dotPow(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
dotPow(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_POW operator.
dotPowAssign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
dotPowAssign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_POW_ASSIGN operator.
dotRightDiv(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
dotRightDiv(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_RIGHT_DIV operator.
dotRightDivAssign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
dotRightDivAssign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_RIGHT_DIV_ASSIGN operator.
dotTranspose(Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
dotTranspose(Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_TRANSPOSE operator.
DoubleArray - Class in org.scijava.util
An extensible array of double elements.
DoubleArray() - Constructor for class org.scijava.util.DoubleArray
Constructs an extensible array of doubles, backed by a fixed-size array.
DoubleArray(int) - Constructor for class org.scijava.util.DoubleArray
Constructs an extensible array of doubles, backed by a fixed-size array.
DoubleArray(double[]) - Constructor for class org.scijava.util.DoubleArray
Constructs an extensible array of doubles, backed by the given fixed-size array.
DoubleArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.DoubleArrayUnwrapper
 
DoubleArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.DoubleArrayWrapper
 
DoubleColumn - Class in org.scijava.table
Efficient implementation of Column for double primitives.
DoubleColumn() - Constructor for class org.scijava.table.DoubleColumn
 
DoubleColumn(String) - Constructor for class org.scijava.table.DoubleColumn
 
DoubleTable - Interface in org.scijava.table
A table of double-precision floating point values.
DoubleToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.DoubleToBigDecimalConverter
 
download(Location, Location) - Method in class org.scijava.download.DefaultDownloadService
 
download(Location, Location, LocationCache) - Method in class org.scijava.download.DefaultDownloadService
 
Download - Interface in org.scijava.download
Object representing an asynchronous download task.
download(Location, Location) - Method in interface org.scijava.download.DownloadService
Downloads data from the given source, storing it into the given destination.
download(Location, Location, LocationCache) - Method in interface org.scijava.download.DownloadService
Downloads data from the given source, storing it into the given destination.
download(URL, File, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
download(URL, File, String, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
download() - Method in class org.scijava.minimaven.MavenProject
 
download(Coordinate, boolean) - Method in class org.scijava.minimaven.MavenProject
 
downloadAndVerify(String, Coordinate, boolean) - Method in class org.scijava.minimaven.BuildEnvironment
 
downloadAndVerify(String, File, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
downloadAndVerify(String, File, String, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
downloadAutomatically - Variable in class org.scijava.minimaven.BuildEnvironment
 
downloadDependencies() - Method in class org.scijava.minimaven.MavenProject
 
DownloadService - Interface in org.scijava.download
Service for managing retrieval of remote resources.
downOctave() - Method in class org.scijava.util.TunePlayer
 
DragAndDropData - Interface in org.scijava.ui.dnd
Interface for drag-and-drop data.
DragAndDropEvent - Class in org.scijava.ui.dnd.event
An event indicating drag-and-drop activity in a display.
DragAndDropEvent(Display<?>) - Constructor for class org.scijava.ui.dnd.event.DragAndDropEvent
 
DragAndDropEvent(Display<?>, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragAndDropEvent
 
DragAndDropEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragAndDropEvent
 
DragAndDropHandler<D> - Interface in org.scijava.ui.dnd
Interface for drag-and-drop handlers.
DragAndDropService - Interface in org.scijava.ui.dnd
Interface for service that handles drag and drop events.
dragEnter(DropTargetDragEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
DragEnterEvent - Class in org.scijava.ui.dnd.event
An event indicating an object was dragged onto a display.
DragEnterEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragEnterEvent
 
dragExit(DropTargetEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
DragExitEvent - Class in org.scijava.ui.dnd.event
An event indicating an object was dragged off of a display.
DragExitEvent(Display<?>) - Constructor for class org.scijava.ui.dnd.event.DragExitEvent
 
dragOver(DropTargetDragEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
DragOverEvent - Class in org.scijava.ui.dnd.event
An event indicating an object was dragged within a display.
DragOverEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragOverEvent
 
draw() - Method in interface org.scijava.display.Displayable
Render self when called.
drawIcon() - Method in interface org.scijava.tool.CustomDrawnTool
 
drop(DropTargetDropEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
drop(D, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Performs a drop operation with the given data object in the specified Display.
drop(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Performs a drag-and-drop operation in the given display with the specified DragAndDropData, using the first available compatible handler.
drop(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Performs a drag-and-drop operation in the given display with the specified data object, using the first available compatible handler.
drop(File, Display<?>) - Method in class org.scijava.ui.dnd.FileDragAndDropHandler
 
drop(List<?>, Display<?>) - Method in class org.scijava.ui.dnd.ListDragAndDropHandler
 
drop(File, Display<?>) - Method in class org.scijava.ui.dnd.ScriptFileDragAndDropHandler
 
dropActionChanged(DropTargetDragEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
dropData(DragAndDropData, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
dropData(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Performs a drop operation with the given data in the specified Display.
DropEvent - Class in org.scijava.ui.dnd.event
An event indicating an object was dropped onto a display.
DropEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DropEvent
 
dropObject(Object, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
dropObject(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Performs a drop operation with the given data in the specified Display.
DummyHandle - Class in org.scijava.io.handle
A DataHandle which reads all zeroes, and writes no actual data.
DummyHandle() - Constructor for class org.scijava.io.handle.DummyHandle
 
DummyLocation - Class in org.scijava.io.location
Location backed by nothing whatsoever.
DummyLocation() - Constructor for class org.scijava.io.location.DummyLocation
 
DummyTool - Class in org.scijava.tool
A tool that does nothing.
DummyTool() - Constructor for class org.scijava.tool.DummyTool
 
dumpStack() - Method in class org.scijava.event.SciJavaEvent
Gets a stack trace for the calling thread when the event was published.
DumpStack - Class in org.scijava.plugins.commands.debug
Provides a complete stack dump of all threads.
DumpStack() - Constructor for class org.scijava.plugins.commands.debug.DumpStack
 
DynamicCommand - Class in org.scijava.command
A command with a variable number of inputs and outputs.
DynamicCommand() - Constructor for class org.scijava.command.DynamicCommand
 
DynamicCommandInfo - Class in org.scijava.command
Helper class for maintaining a DynamicCommand's associated ModuleInfo.
DynamicCommandInfo(CommandInfo, Class<? extends DynamicCommand>) - Constructor for class org.scijava.command.DynamicCommandInfo
 

E

EclipseHelper - Class in org.scijava.annotations
Helps Eclipse's lack of support for annotation processing in incremental build mode.
EclipseHelper() - Constructor for class org.scijava.annotations.EclipseHelper
 
EDIT_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
EDIT_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
EDIT_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
elements(String) - Method in class org.scijava.util.XML
Obtains the elements identified by the given XPath expression.
elements(NodeList) - Static method in class org.scijava.util.XML
Gets the element nodes from the given node list.
elements(Element, String) - Static method in class org.scijava.util.XML
Gets the given element's specified child elements.
end() - Method in class org.scijava.grab.script.process.GrabScriptProcessor
 
end() - Method in class org.scijava.script.process.ParameterScriptProcessor
 
end() - Method in interface org.scijava.script.process.ScriptProcessor
 
endElement(String, String, String) - Method in class org.scijava.minimaven.AbstractPOMHandler
 
endLine - Variable in class org.scijava.minimaven.BuildEnvironment
 
engineScopeBindings - Variable in class org.scijava.script.AbstractScriptEngine
 
ensure(int) - Method in class org.scijava.util.LineOutputStream
Increases the size of the line buffer if necessary.
ensureCapacity(int) - Method in class org.scijava.util.AbstractPrimitiveArray
 
ensureCapacity(int) - Method in interface org.scijava.util.PrimitiveArray
Makes sure the backing array at least a specified capacity.
ensureCapacity(int) - Method in class org.scijava.util.SizableArrayList
 
ensureOpen() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle
 
ensureOpen() - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
ensureReadable(long) - Method in interface org.scijava.io.handle.DataHandle
Ensures that the handle has sufficient bytes available to read.
ensureReadable(long) - Method in interface org.scijava.io.handle.StreamHandle
 
ensureSizeReasonable(Window) - Static method in class org.scijava.ui.awt.AWTWindows
Limits the size of the given window to fit onscreen.
ensureWritable(long) - Method in interface org.scijava.io.handle.DataHandle
Ensures that the handle has the correct length to be written to, and extends it as required.
ensureWritable(long) - Method in interface org.scijava.io.handle.StreamHandle
 
entrySet() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
entrySet() - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
entrySet() - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
entrySet() - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
enumValue(String, Class<T>) - Static method in class org.scijava.util.Types
Converts the given string value to an enumeration constant of the specified type.
env - Variable in class org.scijava.minimaven.MavenProject
 
equal(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
equal(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.EQUAL operator.
EQUAL - Static variable in class org.scijava.parse.Operators
 
equal(Object, Object) - Static method in class org.scijava.util.MiscUtils
Deprecated.
equals(Object) - Method in class org.scijava.input.Accelerator
 
equals(Object) - Method in class org.scijava.input.InputModifiers
 
equals(Object) - Method in class org.scijava.io.location.AbstractLocation
 
equals(Object) - Method in class org.scijava.io.location.BytesLocation
 
equals(Object) - Method in class org.scijava.minimaven.MavenProject
 
equals(Object) - Method in class org.scijava.parse.SyntaxTree
 
equals(Object) - Method in class org.scijava.ui.dnd.MIMEType
 
equals(Object) - Method in class org.scijava.util.ColorRGB
 
equals(Object) - Method in class org.scijava.util.IntCoords
 
equals(Object) - Method in class org.scijava.util.IntRect
 
equals(Object) - Method in class org.scijava.util.RealCoords
 
equals(Object) - Method in class org.scijava.util.RealRect
 
err - Variable in class org.scijava.minimaven.BuildEnvironment
 
err - Variable in class org.scijava.minimaven.JavaCompiler
 
err - Variable in class org.scijava.minimaven.ReadInto
 
error(Object) - Method in interface org.scijava.log.Logger
 
error(Throwable) - Method in interface org.scijava.log.Logger
 
error(Object, Throwable) - Method in interface org.scijava.log.Logger
 
ERROR - Static variable in class org.scijava.log.LogLevel
 
ERROR - Static variable in interface org.scijava.log.LogService
Deprecated.
errorWriter - Variable in class org.scijava.script.AbstractScriptContext
 
eval(String) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptEngine
 
eval(Reader) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptEngine
 
eval(String) - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptEngine
 
eval(Reader) - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptEngine
 
eval(ScriptContext) - Method in class org.scijava.plugins.scripting.groovy.GroovyCompiledScript
 
eval(Reader, ScriptContext) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
eval(String, ScriptContext) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
eval(String) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles and runs the specified .java class.
eval(Reader) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles and runs the specified .java class.
eval(String) - Method in class org.scijava.plugins.scripting.matlab.MATLABScriptEngine
 
eval(Reader) - Method in class org.scijava.plugins.scripting.matlab.MATLABScriptEngine
 
eval(String) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(Reader) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(String, ScriptContext) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(Reader, ScriptContext) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(String, Bindings) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(Reader, Bindings) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(String, ScriptContext) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(Reader, ScriptContext) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(String) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(Reader) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(String, Bindings) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(Reader, Bindings) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(String) - Method in class org.scijava.script.DefaultScriptInterpreter
 
eval(String) - Method in interface org.scijava.script.ScriptInterpreter
Evaluates a command.
evaluate(SyntaxTree) - Method in class org.scijava.parse.eval.AbstractEvaluator
 
evaluate(String) - Method in class org.scijava.parse.eval.AbstractEvaluator
 
evaluate(LinkedList<Object>) - Method in class org.scijava.parse.eval.AbstractStackEvaluator
 
evaluate(String) - Method in interface org.scijava.parse.eval.Evaluator
Evaluates the given infix expression, returning the result.
evaluate(LinkedList<Object>) - Method in interface org.scijava.parse.eval.Evaluator
Evaluates the given postfix token queue, returning the result.
evaluate(SyntaxTree) - Method in interface org.scijava.parse.eval.Evaluator
Evaluates the given syntax tree, returning the result.
evaluate(String) - Method in class org.scijava.script.ScriptREPL
Evaluates the line, including handling of special colon-prefixed REPL commands.
Evaluator - Interface in org.scijava.parse.eval
Interface for expression evaluators.
EvaluatorConsole - Class in org.scijava.parse.eval
A simple console-driven expression evaluator.
EvaluatorConsole() - Constructor for class org.scijava.parse.eval.EvaluatorConsole
 
EvaluatorConsole(Evaluator) - Constructor for class org.scijava.parse.eval.EvaluatorConsole
 
event() - Method in class org.scijava.AbstractGateway
 
event() - Method in interface org.scijava.Gateway
Gets this application context's EventService.
EventDetails - Class in org.scijava.event
Caches details of a particular SciJavaEvent, without saving the event itself (since doing so could leave dangling references).
EventDetails(SciJavaEvent) - Constructor for class org.scijava.event.EventDetails
 
EventHandler - Annotation Type in org.scijava.event
Annotation identifying an event handler method.
eventHistory() - Method in class org.scijava.AbstractGateway
 
EventHistory - Interface in org.scijava.event
Interface for service that keeps a history of SciJava events.
eventHistory() - Method in interface org.scijava.Gateway
Gets this application context's EventHistory.
EventHistoryListener - Interface in org.scijava.event
Listener for event history changes.
eventOccurred(EventDetails) - Method in interface org.scijava.event.EventHistoryListener
 
eventOccurred(EventDetails) - Method in class org.scijava.ui.swing.commands.WatchEvents
 
eventService() - Method in interface org.scijava.command.CommandService
 
eventService() - Method in class org.scijava.command.DefaultCommandService
 
eventService() - Method in class org.scijava.display.DefaultDisplayService
 
eventService() - Method in interface org.scijava.display.DisplayService
 
EventService - Interface in org.scijava.event
Interface for the event handling service.
eventService() - Method in class org.scijava.input.DefaultInputService
 
eventService() - Method in interface org.scijava.input.InputService
 
eventService() - Method in class org.scijava.object.DefaultObjectService
 
eventService() - Method in interface org.scijava.object.ObjectService
 
eventService - Variable in class org.scijava.options.OptionsPlugin
 
eventService() - Method in class org.scijava.platform.DefaultPlatformService
 
eventService() - Method in interface org.scijava.platform.PlatformService
 
EventSubscriber<E extends SciJavaEvent> - Interface in org.scijava.event
Interface for subscribers that wish to be notified of SciJava events.
excludedFromMultiProjects - Variable in class org.scijava.minimaven.BuildEnvironment
 
excludeFromMultiProjects(File) - Method in class org.scijava.minimaven.BuildEnvironment
 
exclusions - Variable in class org.scijava.minimaven.Coordinate
 
exec() - Method in interface org.scijava.main.MainService.Main
Runs the main method with the associated arguments.
exec(File, String...) - Method in class org.scijava.minimaven.BuildEnvironment
 
exec(String...) - Method in class org.scijava.platform.DefaultPlatformService
 
exec(String...) - Method in interface org.scijava.platform.PlatformService
Executes a native program and waits for it to return.
exec(File, PrintStream, PrintStream, String...) - Static method in class org.scijava.util.ProcessUtils
Executes a program.
exec(File, InputStream, PrintStream, PrintStream, String...) - Static method in class org.scijava.util.ProcessUtils
Executes a program.
exec(String) - Method in class org.scijava.util.ReflectedUniverse
Executes a command in the universe.
execMains() - Method in class org.scijava.main.DefaultMainService
 
execMains() - Method in interface org.scijava.main.MainService
Executes registered main classes, in the order they were registered.
execute(String[], File, boolean) - Method in class org.scijava.minimaven.JavaCompiler
 
execute(Object, Object...) - Method in class org.scijava.module.MethodRef
 
execute(Operator, Deque<Object>) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
execute(Operator, Deque<Object>) - Method in interface org.scijava.parse.eval.StackEvaluator
Executes the given operation with the specified value stack.
executeOperations() - Method in class org.scijava.startup.DefaultStartupService
 
executeOperations() - Method in interface org.scijava.startup.StartupService
Execute all registered startup operations, in the order they were registered, blocking until complete.
exists() - Method in class org.scijava.download.MultiWriteHandle
 
exists() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle
 
exists() - Method in class org.scijava.io.handle.BytesHandle
 
exists() - Method in interface org.scijava.io.handle.DataHandle
Tests whether this handle's location actually exists at the source.
exists(Location) - Method in interface org.scijava.io.handle.DataHandleService
Convenience method to test whether it describes an existing file.
exists() - Method in class org.scijava.io.handle.DummyHandle
 
exists() - Method in class org.scijava.io.handle.FileHandle
 
expand(Coordinate) - Method in class org.scijava.minimaven.MavenProject
 
expand(String) - Method in class org.scijava.minimaven.MavenProject
 
ExpressionParser - Class in org.scijava.parse
A parser for mathematical expressions, using Dijkstra's famous shunting-yard algorithm.
ExpressionParser() - Constructor for class org.scijava.parse.ExpressionParser
Creates an expression parser with the default set of operators.
ExpressionParser(Collection<? extends Operator>) - Constructor for class org.scijava.parse.ExpressionParser
Creates an expression parser with the given set of operators.
extractJni(String, String) - Method in class org.scijava.nativelib.BaseJniExtractor
 
extractJni(String, String) - Method in interface org.scijava.nativelib.JniExtractor
Extract a JNI library from the classpath to a temporary file.
extractRegistered() - Method in class org.scijava.nativelib.BaseJniExtractor
 
extractRegistered() - Method in interface org.scijava.nativelib.JniExtractor
Extract all libraries which are registered for auto-extraction to files in the temporary directory.
extractRegistered() - Static method in class org.scijava.nativelib.NativeLoader
Extract all libraries registered for auto-extraction by way of META-INF/lib/AUTOEXTRACT.LIST resources.
EXTREMELY_HIGH - Static variable in class org.scijava.Priority
Priority for items that very strongly prefer to be sorted early.
EXTREMELY_LOW - Static variable in class org.scijava.Priority
Priority for items that very strongly prefer to be sorted late.

F

fail(String) - Method in class org.scijava.parse.Position
Throws IllegalStateException when something is wrong.
fakePOM(File, Coordinate) - Method in class org.scijava.minimaven.BuildEnvironment
 
field(Class<?>, String) - Static method in class org.scijava.util.Types
Gets the field with the specified name, of the given class, or superclass thereof.
FIELD_STYLE - Static variable in interface org.scijava.widget.TextWidget
Widget style for text fields.
fieldType(Field, Class<?>) - Static method in class org.scijava.util.Types
Returns the "safe" generic type of the given field, as viewed from the given type.
file2pom - Variable in class org.scijava.minimaven.BuildEnvironment
 
FILE_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
FILE_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
FILE_NAME - Static variable in class org.scijava.util.CheckSezpoz
Deprecated.
FILE_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
FileArrayToStringConverter() - Constructor for class org.scijava.convert.FileListConverters.FileArrayToStringConverter
 
FileBatchInputProvider - Class in org.scijava.batch.input
 
FileBatchInputProvider() - Constructor for class org.scijava.batch.input.FileBatchInputProvider
 
FileBatchService - Class in org.scijava.batch
 
FileBatchService() - Constructor for class org.scijava.batch.FileBatchService
 
FileDragAndDropHandler - Class in org.scijava.ui.dnd
Drag-and-drop handler for files.
FileDragAndDropHandler() - Constructor for class org.scijava.ui.dnd.FileDragAndDropHandler
 
FileHandle - Class in org.scijava.io.handle
FileHandle() - Constructor for class org.scijava.io.handle.FileHandle
 
FileListConverters - Class in org.scijava.convert
A collection of Converter plugins for going between String, File and File[].
FileListConverters() - Constructor for class org.scijava.convert.FileListConverters
 
FileListConverters.FileArrayToStringConverter - Class in org.scijava.convert
 
FileListConverters.FileToStringConverter - Class in org.scijava.convert
 
FileListConverters.StringToFileArrayConverter - Class in org.scijava.convert
 
FileListConverters.StringToFileConverter - Class in org.scijava.convert
 
FileListPreprocessor - Class in org.scijava.ui
 
FileListPreprocessor() - Constructor for class org.scijava.ui.FileListPreprocessor
 
FileListWidget<U> - Interface in org.scijava.widget
 
FileLocation - Class in org.scijava.io.location
Location backed by a File on disk.
FileLocation(File) - Constructor for class org.scijava.io.location.FileLocation
 
FileLocation(String) - Constructor for class org.scijava.io.location.FileLocation
 
FileLocation(URI) - Constructor for class org.scijava.io.location.FileLocation
 
FileLocationResolver - Class in org.scijava.io.location
Implementation of LocationResolver for FileLocation.
FileLocationResolver() - Constructor for class org.scijava.io.location.FileLocationResolver
 
FilePreprocessor - Class in org.scijava.ui
A preprocessor plugin that handles single unresolved parameters of type File using a UI prompt.
FilePreprocessor() - Constructor for class org.scijava.ui.FilePreprocessor
 
FILES_AND_DIRECTORIES - Static variable in interface org.scijava.widget.FileListWidget
Widget style to allow selection of both files and directories
FILES_ONLY - Static variable in interface org.scijava.widget.FileListWidget
Widget style to allow file selection only
FileScriptBatchProcessor - Class in org.scijava.batch
 
FileScriptBatchProcessor() - Constructor for class org.scijava.batch.FileScriptBatchProcessor
 
FileToStringConverter() - Constructor for class org.scijava.convert.FileListConverters.FileToStringConverter
 
FileUtils - Class in org.scijava.util
Useful methods for working with file paths.
FileWidget<U> - Interface in org.scijava.widget
Widget interface for file selectors.
fill(boolean[]) - Method in class org.scijava.table.BoolColumn
 
fill(boolean[], int) - Method in class org.scijava.table.BoolColumn
 
fill(byte[]) - Method in class org.scijava.table.ByteColumn
 
fill(byte[], int) - Method in class org.scijava.table.ByteColumn
 
fill(char[]) - Method in class org.scijava.table.CharColumn
 
fill(char[], int) - Method in class org.scijava.table.CharColumn
 
fill(double[]) - Method in class org.scijava.table.DoubleColumn
 
fill(double[], int) - Method in class org.scijava.table.DoubleColumn
 
fill(float[]) - Method in class org.scijava.table.FloatColumn
 
fill(float[], int) - Method in class org.scijava.table.FloatColumn
 
fill(int[]) - Method in class org.scijava.table.IntColumn
 
fill(int[], int) - Method in class org.scijava.table.IntColumn
 
fill(long[]) - Method in class org.scijava.table.LongColumn
 
fill(long[], int) - Method in class org.scijava.table.LongColumn
 
fill(ArrayType) - Method in interface org.scijava.table.PrimitiveColumn
Fills the column with the values in the given array.
fill(ArrayType, int) - Method in interface org.scijava.table.PrimitiveColumn
Fills the column with the values in the given array.
fill(short[]) - Method in class org.scijava.table.ShortColumn
 
fill(short[], int) - Method in class org.scijava.table.ShortColumn
 
fillInput(Module, ModuleItem<?>, I) - Method in interface org.scijava.batch.BatchService
Fill a provided ModuleItem with a given input object
fillInput(Module, ModuleItem<?>, I) - Method in class org.scijava.batch.FileBatchService
 
filterFiles(List<File>, FileFilter) - Static method in class org.scijava.ui.swing.widget.SwingFileWidget
Filters the given list of files according to the specified FileFilter.
filterInstances(List<Platform>) - Method in class org.scijava.platform.DefaultPlatformService
 
filterInstances(List<PT>) - Method in interface org.scijava.plugin.SingletonService
Filters the given list of instances by this service's inclusion criteria.
finalize() - Method in class org.scijava.nativelib.WebappJniExtractor
 
find(DT) - Method in interface org.scijava.plugin.TypedService
Gets a new instance of the highest priority plugin managed by this service which supports the given data object according to the Typed interface.
findDisplayContentScreenX() - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
findDisplayContentScreenX() - Method in class org.scijava.ui.swing.viewer.SwingDisplayWindow
 
findDisplayContentScreenX() - Method in interface org.scijava.ui.viewer.DisplayWindow
Finds the x coordinate on the screen of the origin of the display window's content.
findDisplayContentScreenY() - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
findDisplayContentScreenY() - Method in class org.scijava.ui.swing.viewer.SwingDisplayWindow
 
findDisplayContentScreenY() - Method in interface org.scijava.ui.viewer.DisplayWindow
Finds the y coordinate on the screen of the origin of the display window's content.
findInMultiProjects(Coordinate) - Method in class org.scijava.minimaven.MavenProject
 
findLocallyCachedVersion(String) - Method in class org.scijava.minimaven.MavenProject
 
findPlugins(List<PluginInfo<?>>) - Method in class org.scijava.plugin.DefaultPluginFinder
 
findPlugins(List<PluginInfo<?>>) - Method in interface org.scijava.plugin.PluginFinder
Populates the given list with all available SciJava plugins.
findPluginsOfClass(String, List<? extends PluginInfo<?>>, List<T>) - Static method in class org.scijava.plugin.DefaultPluginService
Transfers plugins of the given class from the source list to the destination list.
findPOM(Coordinate, boolean, boolean) - Method in class org.scijava.minimaven.MavenProject
 
findPOM(MavenProject, String) - Static method in class org.scijava.minimaven.MiniMaven
 
findResources(String, String, File) - Static method in class org.scijava.util.FileUtils
Finds URLs of available resources.
findResources(String, Iterable<URL>) - Static method in class org.scijava.util.FileUtils
Finds URLs of resources known to the system.
findScripts(List<ScriptInfo>) - Method in class org.scijava.script.ScriptFinder
Discovers the scripts.
findString(String...) - Method in interface org.scijava.io.handle.DataHandle
Reads a string ending with one of the given terminating substrings.
findString(boolean, String...) - Method in interface org.scijava.io.handle.DataHandle
Reads or skips a string ending with one of the given terminating substrings.
findString(int, String...) - Method in interface org.scijava.io.handle.DataHandle
Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.
findString(boolean, int, String...) - Method in interface org.scijava.io.handle.DataHandle
Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.
findUltimateParent(Component) - Method in class org.scijava.ui.swing.StaticSwingUtils
 
FIREBRICK - Static variable in class org.scijava.util.Colors
 
FIRST - Static variable in class org.scijava.Priority
Priority for items that must be sorted first.
first(List<T>) - Static method in class org.scijava.util.ListUtils
Gets the first element of the given list, or null if none.
FIRST_PRIORITY - Static variable in class org.scijava.Priority
Deprecated.
Use Priority.FIRST instead.
firstNonDigit(String) - Static method in class org.scijava.minimaven.BuildEnvironment
 
fix(File, File) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
FloatArray - Class in org.scijava.util
An extensible array of float elements.
FloatArray() - Constructor for class org.scijava.util.FloatArray
Constructs an extensible array of floats, backed by a fixed-size array.
FloatArray(int) - Constructor for class org.scijava.util.FloatArray
Constructs an extensible array of floats, backed by a fixed-size array.
FloatArray(float[]) - Constructor for class org.scijava.util.FloatArray
Constructs an extensible array of floats, backed by the given fixed-size array.
FloatArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.FloatArrayUnwrapper
 
FloatArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.FloatArrayWrapper
 
FloatColumn - Class in org.scijava.table
Efficient implementation of Column for float primitives.
FloatColumn() - Constructor for class org.scijava.table.FloatColumn
 
FloatColumn(String) - Constructor for class org.scijava.table.FloatColumn
 
FloatTable - Interface in org.scijava.table
A table of float-precision floating point values.
FloatToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.FloatToBigDecimalConverter
 
FloatToDoubleConverter() - Constructor for class org.scijava.convert.NumberConverters.FloatToDoubleConverter
 
FLORALWHITE - Static variable in class org.scijava.util.Colors
 
flush() - Method in class org.scijava.console.MultiOutputStream
 
flush() - Method in class org.scijava.io.handle.DataHandleOutputStream
 
flush() - Method in class org.scijava.util.LineOutputStream
If any bytes are in the current line buffer, output the line via LineOutputStream.println(String), stripping any trailing new-line characters.
focusTextFilter() - Method in class org.scijava.ui.swing.console.LoggingPanel
 
forceLoadClass(String) - Method in class org.scijava.minimaven.JarClassLoader
 
FORESTGREEN - Static variable in class org.scijava.util.Colors
 
format(LogMessage) - Method in class org.scijava.ui.swing.console.LogFormatter
 
format(double) - Static method in class org.scijava.util.UnitUtils
 
foundAnnotations() - Method in class org.scijava.annotations.AbstractIndexWriter
 
fromDouble(double, boolean) - Static method in class org.scijava.util.Bytes
Translates the double value into an array of eight bytes.
fromDoubles(double[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of double values into an array of byte values.
fromFloat(float, boolean) - Static method in class org.scijava.util.Bytes
Translates the float value into an array of four bytes.
fromFloats(float[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of float values into an array of byte values.
fromHSVColor(double, double, double) - Static method in class org.scijava.util.ColorRGB
 
fromHTMLColor(String) - Static method in class org.scijava.util.ColorRGB
Convert a string in the format specified by CSS Color Module Level 3 - W3C Recommendation 07 June 2011 to a ColorRGB object.
fromInt(int, boolean) - Static method in class org.scijava.util.Bytes
Translates the int value into an array of four bytes.
fromInts(int[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of int values into an array of byte values.
fromLong(long, boolean) - Static method in class org.scijava.util.Bytes
Translates the long value into an array of eight bytes.
fromLongs(long[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of long values into an array of byte values.
fromShort(short, boolean) - Static method in class org.scijava.util.Bytes
Translates the short value into an array of two bytes.
fromShorts(short[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of short values into an array of byte values.
FUCHSIA - Static variable in class org.scijava.util.Colors
 
function(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
function(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Function operator.
Function - Class in org.scijava.parse
A function is an implicit binary operator between two "noun" tokens—typically between a variable on the left and a group on the right, in which case the function's precedence is inferred from the group.
Function(double) - Constructor for class org.scijava.parse.Function
 

G

GAINSBORO - Static variable in class org.scijava.util.Colors
 
Gateway - Interface in org.scijava
Interface for convenience classes that wrap a Context to provide one-line access to a suite of Services.
GatewayPreprocessor - Class in org.scijava.module.process
The gateway preprocessor automatically populates module inputs that implement Gateway.
GatewayPreprocessor() - Constructor for class org.scijava.module.process.GatewayPreprocessor
 
GenericColumn - Class in org.scijava.table
A column that can consist of any Objects.
GenericColumn() - Constructor for class org.scijava.table.GenericColumn
 
GenericColumn(String) - Constructor for class org.scijava.table.GenericColumn
 
GenericTable - Interface in org.scijava.table
A flexible table capable of storing any values as Objects.
GenericUtils - Class in org.scijava.util
Deprecated.
Use Types instead.
get(String) - Method in class org.scijava.AbstractBasicDetails
 
get(Class<S>) - Method in class org.scijava.AbstractGateway
 
get(String) - Method in class org.scijava.AbstractGateway
 
get(String) - Method in interface org.scijava.BasicDetails
Gets the value of the given key, or null if undefined.
get(Object) - Method in interface org.scijava.cache.CacheService
 
get(Object, Callable<V>) - Method in interface org.scijava.cache.CacheService
 
get(Object) - Method in class org.scijava.cache.DefaultCacheService
 
get(String) - Method in class org.scijava.command.CommandModuleItem
 
get(int) - Method in class org.scijava.display.AbstractDisplay
 
get(Class<S>) - Method in interface org.scijava.Gateway
Returns an implementation of the requested Service, if it exists in the underlying Context.
get(String) - Method in interface org.scijava.Gateway
Returns an implementation of the Service with the given class name, if it exists in the underlying Context.
get(int) - Static method in enum org.scijava.input.KeyCode
Gets the KeyCode corresponding to the given numeric code, or KeyCode.UNDEFINED if no such code.
get(String) - Static method in enum org.scijava.input.KeyCode
Gets the KeyCode with the given name, or KeyCode.UNDEFINED if no such code.
get() - Method in interface org.scijava.object.LazyObjects
Gets the collection of objects.
get(Class<?>) - Method in class org.scijava.object.ObjectIndex
Gets a list of registered objects compatible with the given type.
get(Variable) - Method in class org.scijava.parse.eval.AbstractEvaluator
 
get(Variable) - Method in interface org.scijava.parse.eval.Evaluator
Gets the value of the given variable.
get() - Method in class org.scijava.parse.Position
 
get() - Method in class org.scijava.plugin.AbstractWrapperPlugin
 
get() - Method in interface org.scijava.plugin.WrapperPlugin
Gets the data object currently associated with this plugin.
get(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
get(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
get(Object) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
get(Object) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
get(String) - Method in class org.scijava.plugins.scripting.scala.ScalaScriptEngine
 
get(Class<?>, String, String) - Method in class org.scijava.prefs.DefaultPrefService
 
get(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a String.
get(Class<?>, String, String) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a String.
get(String) - Method in interface org.scijava.prefs.PrefService
get(String, String) - Method in interface org.scijava.prefs.PrefService
get(String) - Method in class org.scijava.script.AbstractScriptEngine
 
get(String) - Method in class org.scijava.script.AdaptedScriptEngine
 
get(String) - Method in interface org.scijava.table.Table
Returns the first column with the given header in the table.
get(int, int) - Method in interface org.scijava.table.Table
Gets the table value at the given column and row.
get(String, int) - Method in interface org.scijava.table.Table
Gets the table value at the given column and row.
get(int) - Method in interface org.scijava.table.Table
Returns the column at the specified position in the table.
get(int) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
get(int) - Method in class org.scijava.util.BoolArray
 
get(int) - Method in class org.scijava.util.ByteArray
 
get(int) - Method in class org.scijava.util.CharArray
 
get(int) - Method in class org.scijava.util.DoubleArray
 
get(int) - Method in class org.scijava.util.FloatArray
 
get(int) - Method in class org.scijava.util.IntArray
 
get(int) - Method in class org.scijava.util.LastRecentlyUsed
Returns the entry for the given index.
get(int) - Method in class org.scijava.util.LongArray
 
get(String) - Method in class org.scijava.util.Manifest
 
get(int) - Method in class org.scijava.util.ObjectArray
 
get(String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
get(String, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
get(Class<?>, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
get(Class<?>, String, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
get(int) - Method in class org.scijava.util.ShortArray
 
get() - Method in class org.scijava.widget.AbstractInputWidget
 
get() - Method in interface org.scijava.widget.InputWidget
Gets the model object backing this widget.
getAbbreviatedByteLabel(double) - Static method in class org.scijava.util.UnitUtils
 
getAccelerator() - Method in class org.scijava.display.event.input.KyEvent
Converts the key event into a corresponding accelerator.
getAccelerator() - Method in class org.scijava.MenuEntry
 
getActiveDisplay() - Method in class org.scijava.display.DefaultDisplayService
 
getActiveDisplay(Class<D>) - Method in class org.scijava.display.DefaultDisplayService
 
getActiveDisplay() - Method in interface org.scijava.display.DisplayService
Gets the currently active display (of any Display type).
getActiveDisplay(Class<D>) - Method in interface org.scijava.display.DisplayService
Gets the most recently active display (of the specified Display type).
getActiveTool() - Method in class org.scijava.tool.DefaultToolService
 
getActiveTool() - Method in interface org.scijava.tool.ToolService
 
getAliases() - Method in class org.scijava.script.DefaultScriptService
 
getAliases() - Method in interface org.scijava.script.ScriptService
TODO
getAll() - Method in class org.scijava.object.ObjectIndex
Gets a list of all registered objects.
getAll() - Method in class org.scijava.util.Manifest
 
getAllPOMs() - Static method in class org.scijava.util.POM
Gets all available Maven POMs on the class path.
getAllVersions(File, String) - Static method in class org.scijava.util.FileUtils
Lists all versions of a given (possibly versioned) file name.
getAlpha(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getAlpha() - Method in class org.scijava.util.ColorRGB
 
getAlpha() - Method in class org.scijava.util.ColorRGBA
 
getAlwaysActiveTools() - Method in class org.scijava.tool.DefaultToolService
 
getAlwaysActiveTools() - Method in interface org.scijava.tool.ToolService
 
getAnnotatedFields(Class<?>, Class<A>) - Static method in class org.scijava.util.ClassUtils
Gets the given class's Fields marked with the annotation of the specified class.
getAnnotatedFields(Class<?>, Class<A>, List<Field>) - Static method in class org.scijava.util.ClassUtils
Gets the given class's Fields marked with the annotation of the specified class.
getAnnotatedMethods(Class<?>, Class<A>) - Static method in class org.scijava.util.ClassUtils
Gets the given class's Methods marked with the annotation of the specified class.
getAnnotatedMethods(Class<?>, Class<A>, List<Method>) - Static method in class org.scijava.util.ClassUtils
Gets the given class's Methods marked with the annotation of the specified class.
getAnnotation() - Method in class org.scijava.plugin.PluginInfo
Gets the associated @Plugin annotation.
getAnnotationFiles() - Method in class org.scijava.annotations.AnnotationCombiner
Scans for annotations files in every resource on the classpath.
getAnnotationFiles() - Method in class org.scijava.util.CombineAnnotations
Deprecated.
getApp() - Method in class org.scijava.AbstractGateway
 
getApp() - Method in interface org.scijava.app.AppService
Gets the foremost application (the one with the highest priority).
getApp(String) - Method in interface org.scijava.app.AppService
Gets an application by name.
getApp(String) - Method in class org.scijava.app.DefaultAppService
 
getApp() - Method in interface org.scijava.Gateway
 
getAppEventService() - Method in class org.scijava.platform.DefaultPlatformService
 
getAppEventService() - Method in interface org.scijava.platform.PlatformService
Deprecated.
Use AppService and App instead.
getApplicationFrame() - Method in class org.scijava.ui.awt.AWTUI
 
getApplicationFrame() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
getApplicationFrame() - Method in interface org.scijava.ui.UserInterface
Gets the main SciJava application frame, or null if not applicable.
getApps() - Method in interface org.scijava.app.AppService
Gets the table of associated applications, keyed by name.
getApps() - Method in class org.scijava.app.DefaultAppService
 
getArchitecture() - Static method in class org.scijava.nativelib.NativeLibraryUtil
Determines the underlying hardware platform and architecture.
getArchiverVersion() - Method in class org.scijava.util.Manifest
 
getARGB(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getARGB() - Method in class org.scijava.util.ColorRGB
Gets the color as a packed integer, 8 bits per color component.
getArity() - Method in class org.scijava.parse.Group
 
getArity() - Method in class org.scijava.parse.Operator
1 for unary, 2 for binary, etc.
getArrangement() - Method in interface org.scijava.ui.Arrangeable
 
getArrangement() - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
 
getArray() - Method in class org.scijava.util.BoolArray
 
getArray() - Method in class org.scijava.util.ByteArray
 
getArray() - Method in class org.scijava.util.CharArray
 
getArray() - Method in class org.scijava.util.DoubleArray
 
getArray() - Method in class org.scijava.util.FloatArray
 
getArray() - Method in class org.scijava.util.IntArray
 
getArray() - Method in class org.scijava.util.LongArray
 
getArray() - Method in class org.scijava.util.ObjectArray
 
getArray() - Method in interface org.scijava.util.PrimitiveArray
Gets the fixed-size array backing this instance.
getArray() - Method in class org.scijava.util.ShortArray
 
getArrayClass(Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
Use Types.array(Class) instead.
getArtifactId() - Method in interface org.scijava.app.App
The Maven artifactId of the application.
getArtifactId() - Method in class org.scijava.app.SciJavaApp
 
getArtifactId() - Method in class org.scijava.minimaven.Coordinate
 
getArtifactId() - Method in class org.scijava.minimaven.MavenProject
 
getArtifactId() - Method in class org.scijava.util.POM
Gets the POM's artifactId.
getAssociativity() - Method in class org.scijava.parse.Operator
 
getAttribute(String) - Method in class org.scijava.script.AbstractScriptContext
 
getAttribute(String, int) - Method in class org.scijava.script.AbstractScriptContext
 
getAttributesScope(String) - Method in class org.scijava.script.AbstractScriptContext
 
getAutoCompleter() - Method in interface org.scijava.script.ScriptLanguage
Gets a helper object capable of generating autocomplete suggestions for a code fragment.
getAvailableUIs() - Method in class org.scijava.ui.DefaultUIService
 
getAvailableUIs() - Method in interface org.scijava.ui.UIService
Gets the user interfaces available to the service.
getBase() - Method in class org.scijava.ui.dnd.MIMEType
Gets the MIME type with no parameter list.
getBaseClass() - Method in class org.scijava.object.ObjectIndex
Gets the base class of the items being managed.
getBaseDirectory() - Method in interface org.scijava.app.App
Gets the application's root directory.
getBaseDirectory() - Method in class org.scijava.download.DiskLocationCache
 
getBaseDirectory(String, Class<?>, String) - Static method in class org.scijava.util.AppUtils
Gets the application root directory.
getBaseDirectory(Class<?>) - Static method in class org.scijava.util.AppUtils
Gets the base file system directory containing the given class file.
getBaseDirectory(Class<?>, String) - Static method in class org.scijava.util.AppUtils
Gets the base file system directory containing the given class file.
getBaseDirectory(File, String) - Static method in class org.scijava.util.AppUtils
Gets the base file system directory from the given known class location.
getBindings(int) - Method in class org.scijava.script.AbstractScriptContext
 
getBindings(int) - Method in class org.scijava.script.AbstractScriptEngine
 
getBindings(int) - Method in class org.scijava.script.AdaptedScriptEngine
 
getBindings() - Method in class org.scijava.script.DefaultScriptInterpreter
 
getBindings() - Method in interface org.scijava.script.ScriptInterpreter
Returns the Bindings of the associated ScriptEngine at ScriptContext.ENGINE_SCOPE scope.
getBlue(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getBlue() - Method in class org.scijava.util.ColorRGB
 
getBoolean(Class<?>, String, boolean) - Method in class org.scijava.prefs.DefaultPrefService
 
getBoolean(Class<?>, String, boolean) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a boolean.
getBoolean(String, boolean) - Method in interface org.scijava.prefs.PrefService
getBoolean(String, boolean) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getBoolean(Class<?>, String, boolean) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getBottomRight() - Method in class org.scijava.util.IntRect
Gets the bottom right coordinate of the rectangle.
getBottomRight() - Method in class org.scijava.util.RealRect
Gets the bottom right coordinate of the rectangle.
getBuildFromSource() - Method in class org.scijava.minimaven.MavenProject
 
getBuildJdk() - Method in class org.scijava.util.Manifest
 
getBuildNumber(Class<?>) - Static method in class org.scijava.util.VersionUtils
Looks up the build number (typically an SCM revision) of the specified class.
getBuiltBy() - Method in class org.scijava.util.Manifest
 
getButton() - Method in class org.scijava.display.event.input.MsButtonEvent
 
getByExtension(String) - Method in class org.scijava.script.ScriptLanguageIndex
 
getByName(String) - Method in class org.scijava.script.ScriptLanguageIndex
 
getByte(long) - Method in class org.scijava.io.ByteArrayByteBank
 
getByte(long) - Method in interface org.scijava.io.ByteBank
 
getByte(long) - Method in class org.scijava.io.nio.ByteBufferByteBank
 
getByteBank() - Method in class org.scijava.io.location.BytesLocation
Gets the backing ByteBank.
getBytes(long, byte[], int, int) - Method in class org.scijava.io.ByteArrayByteBank
 
getBytes(long, byte[]) - Method in interface org.scijava.io.ByteBank
 
getBytes(long, byte[], int, int) - Method in interface org.scijava.io.ByteBank
 
getBytes(long, byte[], int, int) - Method in class org.scijava.io.nio.ByteBufferByteBank
 
getCallback() - Method in class org.scijava.command.CommandModuleItem
 
getCallback() - Method in class org.scijava.module.AbstractModuleItem
 
getCallback() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getCallback() - Method in interface org.scijava.module.ModuleItem
Gets the function that is called whenever this item changes.
getCallingClass() - Static method in class org.scijava.log.CallingClassUtils
Inspects the stack trace to return the class that calls this method, but ignores every class annotated with @IgnoreAsCallingClass.
getCallingClass(Class<?>) - Static method in class org.scijava.test.TestUtils
Returns the class of the caller (excluding the specified class).
getCallingCodeLocation(Class<?>) - Static method in class org.scijava.test.TestUtils
Returns the class and the method/line number of the caller (excluding the specified class).
getCallingThread() - Method in class org.scijava.event.SciJavaEvent
Gets the thread that published the event.
getCancelReason() - Method in interface org.scijava.Cancelable
Gets a message describing why the operation was canceled.
getCancelReason() - Method in class org.scijava.command.CommandModule
 
getCancelReason() - Method in class org.scijava.command.ContextCommand
 
getCancelReason() - Method in class org.scijava.command.DynamicCommand
 
getCancelReason() - Method in class org.scijava.command.ModuleCommand
 
getCancelReason() - Method in class org.scijava.module.process.AbstractPreprocessorPlugin
 
getCancelReason() - Method in class org.scijava.task.DefaultTask
 
getCancelReason() - Method in class org.scijava.ui.AbstractInputHarvesterPlugin
 
getCellEditorValue() - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeEditor
 
getCharacter() - Method in class org.scijava.display.event.input.KyEvent
 
getChildren() - Method in class org.scijava.menu.ShadowMenu
Gets this node's children, sorted by weight.
getChildren() - Method in class org.scijava.minimaven.MavenProject
 
getChoices() - Method in class org.scijava.command.CommandModuleItem
 
getChoices() - Method in class org.scijava.module.AbstractModuleItem
 
getChoices() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getChoices() - Method in interface org.scijava.module.ModuleItem
Gets the list of possible values.
getChoices() - Method in class org.scijava.widget.DefaultWidgetModel
 
getChoices() - Method in interface org.scijava.widget.WidgetModel
Gets the multiple choice list for the module input.
getCIManagementSystem() - Method in class org.scijava.util.POM
Gets the CI management system.
getCIManagementURL() - Method in class org.scijava.util.POM
Gets the CI management URL.
getClass(Type) - Static method in class org.scijava.util.ConversionUtils
getClass(Type) - Static method in class org.scijava.util.GenericUtils
Deprecated.
getClasses(Type) - Static method in class org.scijava.util.GenericUtils
Deprecated.
getClassName() - Method in class org.scijava.command.CommandInfo
 
getClassName() - Method in interface org.scijava.Instantiable
Gets the fully qualified name of the Class of the objects that can be created.
getClassName() - Method in class org.scijava.plugin.PluginInfo
 
getClassPath(boolean) - Method in class org.scijava.minimaven.MavenProject
 
getClosestPresetColor(ColorRGB) - Static method in class org.scijava.util.Colors
Returns the preset color closest to a given color.
getCode() - Method in class org.scijava.display.event.input.KyEvent
 
getCode() - Method in enum org.scijava.input.KeyCode
Gets the key's numeric code.
getColor(ColorRGB) - Static method in class org.scijava.ui.awt.AWTColors
Gets the AWT Color corresponding to the given ImageJ ColorRGB.
getColor(ColorRGB, int) - Static method in class org.scijava.ui.awt.AWTColors
Get the AWT Color corresponding to the given ImageJ ColorRGB plus explicit alpha component (0-255).
getColor(String) - Static method in class org.scijava.util.Colors
Gets the preset color with the given name.
getColorRGB(Color) - Static method in class org.scijava.ui.awt.AWTColors
Gets the ImageJ ColorRGB corresponding to the given AWT Color.
getColorRGBA(Color) - Static method in class org.scijava.ui.awt.AWTColors
Get the ImageJ ColorRGBA corresponding to the given AWT Color, including alpha component.
getColumnCount() - Method in class org.scijava.command.CommandModuleItem
 
getColumnCount() - Method in class org.scijava.module.AbstractModuleItem
 
getColumnCount() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getColumnCount() - Method in interface org.scijava.module.ModuleItem
Gets the preferred width of the input field in characters (if applicable).
getColumnCount() - Method in interface org.scijava.table.Table
Gets the number of columns in the table.
getColumnCount() - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
getColumnCount() - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel.NullTableModel
 
getColumnCount() - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel.TableModel
 
getColumnHeader(int) - Method in interface org.scijava.table.Table
Gets the column header at the given column.
getColumnIndex(String) - Method in interface org.scijava.table.Table
Gets the column index of the column with the given header.
getColumnName(int) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
getColumnName(int) - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel.TableModel
 
getCommand() - Method in class org.scijava.command.CommandModule
Gets the command instance handled by this module.
getCommand(Class<C>) - Method in interface org.scijava.command.CommandService
Gets the first available command of the given class, or null if none.
getCommand(String) - Method in interface org.scijava.command.CommandService
Gets the first available command of the given class name, or null if none.
getCommand(Class<C>) - Method in class org.scijava.command.DefaultCommandService
 
getCommand(String) - Method in class org.scijava.command.DefaultCommandService
 
getCommand() - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
Gets the currently selected command.
getCommands() - Method in interface org.scijava.command.CommandService
Gets the list of all available Commands).
getCommands(List<PluginInfo<CT>>) - Method in interface org.scijava.command.CommandService
Gets the list of Commands corresponding to the given plugins.
getCommands() - Method in class org.scijava.command.DefaultCommandService
 
getCommands(List<PluginInfo<CT>>) - Method in class org.scijava.command.DefaultCommandService
 
getCommands() - Method in interface org.scijava.platform.AppEventService
Deprecated.
Tag relevant commands instead: attrs = { @Attr(name = "app-command") }
getCommands() - Method in class org.scijava.platform.DefaultAppEventService
Deprecated.
 
getCommandService() - Method in interface org.scijava.platform.PlatformService
Deprecated.
getCommandsOfClass(Class<C>) - Method in interface org.scijava.command.CommandService
Gets the list of commands of the given class.
getCommandsOfClass(String) - Method in interface org.scijava.command.CommandService
Gets the list of commands with the given class name.
getCommandsOfClass(Class<C>) - Method in class org.scijava.command.DefaultCommandService
 
getCommandsOfClass(String) - Method in class org.scijava.command.DefaultCommandService
 
getCommandsOfType(Class<CT>) - Method in interface org.scijava.command.CommandService
Gets the list of Commands of the given type.
getCommandsOfType(Class<CT>) - Method in class org.scijava.command.DefaultCommandService
 
getCompatibleInputClasses(Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getCompatibleInputClasses(Class<?>) - Method in interface org.scijava.convert.ConvertService
 
getCompatibleInputs(Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getCompatibleInputs(Class<?>) - Method in interface org.scijava.convert.ConvertService
 
getCompatibleOutputClasses(Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getCompatibleOutputClasses(Class<?>) - Method in interface org.scijava.convert.ConvertService
 
getComponent() - Method in class org.scijava.ui.awt.widget.AWTInputPanel
 
getComponent() - Method in class org.scijava.ui.awt.widget.AWTInputWidget
 
getComponent() - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
getComponent() - Method in class org.scijava.ui.swing.widget.SwingInputPanel
 
getComponent() - Method in class org.scijava.ui.swing.widget.SwingInputWidget
 
getComponent() - Method in interface org.scijava.widget.UIComponent
Gets the user interface component housing this object.
getComponentClass(Type) - Static method in class org.scijava.util.ConversionUtils
getComponentClass(Type) - Static method in class org.scijava.util.GenericUtils
getComponentType() - Method in class org.scijava.ui.awt.widget.AWTInputPanel
 
getComponentType() - Method in class org.scijava.ui.awt.widget.AWTInputWidget
 
getComponentType() - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
getComponentType() - Method in class org.scijava.ui.swing.widget.SwingInputPanel
 
getComponentType() - Method in class org.scijava.ui.swing.widget.SwingInputWidget
 
getComponentType(Type) - Static method in class org.scijava.util.GenericUtils
Deprecated.
getComponentType() - Method in interface org.scijava.widget.UIComponent
Gets the type of the UI component housing the object.
getConsolePane() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
getConsolePane() - Method in interface org.scijava.ui.UserInterface
Gets the main SciJava console pane, or null if not applicable.
getContext() - Method in class org.scijava.AbstractContextual
 
getContext() - Method in class org.scijava.command.CommandModule
 
getContext() - Method in class org.scijava.command.DynamicCommand
 
getContext() - Method in class org.scijava.command.ModuleCommand
 
getContext() - Method in interface org.scijava.Contextual
Gets the application context to which the object belongs, or null if Contextual.setContext(Context) has not yet been called on this object.
getContext() - Method in class org.scijava.script.AbstractScriptEngine
 
getContext() - Method in class org.scijava.script.AdaptedScriptEngine
 
getContext() - Method in class org.scijava.script.ScriptInfo
 
getContext() - Method in class org.scijava.script.ScriptModule
 
getContext() - Method in class org.scijava.service.AbstractService
 
getCoordinate() - Method in class org.scijava.minimaven.MavenProject
 
getCreatedBy() - Method in class org.scijava.util.Manifest
 
getCursor() - Method in interface org.scijava.tool.Tool
The tool's mouse pointer.
getCursor(MouseCursor) - Static method in class org.scijava.ui.awt.AWTCursors
Gets the AWT Cursor corresponding to the given ImageJ MouseCursor.
getCursorCode(MouseCursor) - Static method in class org.scijava.ui.awt.AWTCursors
Gets the AWT cursor code corresponding to the given ImageJ MouseCursor.
getData() - Method in class org.scijava.io.event.IOEvent
Gets the data for which I/O took place.
getData() - Method in class org.scijava.plugins.commands.io.OpenFile
 
getData() - Method in class org.scijava.ui.ARGBPlane
 
getData(MIMEType) - Method in class org.scijava.ui.awt.AWTDragAndDropData
 
getData(MIMEType) - Method in class org.scijava.ui.dnd.DefaultDragAndDropData
 
getData(MIMEType) - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets the data with respect to the given MIME type.
getData(Class<T>) - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets the data as an object of the given Java class.
getData() - Method in class org.scijava.ui.dnd.event.DragAndDropEvent
Gets the drag-and-drop data.
getDataHandle() - Method in class org.scijava.io.handle.DataHandleInputStream
 
getDataType() - Method in interface org.scijava.io.IOPlugin
The type of data opened and/or saved by the plugin.
getDataType() - Method in class org.scijava.script.io.ScriptIOPlugin
 
getDataType() - Method in class org.scijava.table.DefaultTableIOPlugin
 
getDataType() - Method in class org.scijava.text.io.TextIOPlugin
 
getDefaultUI() - Method in class org.scijava.ui.DefaultUIService
 
getDefaultUI() - Method in interface org.scijava.ui.UIService
Gets the default user interface.
getDefaultValue() - Method in class org.scijava.command.CommandModuleItem
 
getDefaultValue() - Method in class org.scijava.module.AbstractModuleItem
 
getDefaultValue(ModuleItem<T>) - Method in class org.scijava.module.DefaultModuleService
 
getDefaultValue() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getDefaultValue() - Method in interface org.scijava.module.ModuleItem
Gets the default value.
getDefaultValue(ModuleItem<T>) - Method in interface org.scijava.module.ModuleService
Gets the default value of the given ModuleItem.
getDefaultValue(Number, Number, Class<?>) - Static method in class org.scijava.util.NumberUtils
 
getDelegateClass() - Method in class org.scijava.module.AbstractModuleItem
 
getDelegateClassName() - Method in class org.scijava.command.CommandInfo
 
getDelegateClassName() - Method in interface org.scijava.module.ModuleInfo
Gets the fully qualified name of the class containing the module's actual implementation.
getDelegateClassName() - Method in interface org.scijava.module.MutableModuleInfo
 
getDelegateClassName() - Method in class org.scijava.script.ScriptInfo
 
getDelegateObject() - Method in class org.scijava.command.CommandModule
 
getDelegateObject() - Method in class org.scijava.module.AbstractModule
 
getDelegateObject() - Method in interface org.scijava.module.Module
Gets the object containing the module's actual implementation.
getDependencies() - Method in class org.scijava.minimaven.MavenProject
 
getDependencies(boolean, boolean, String...) - Method in class org.scijava.minimaven.MavenProject
 
getDependencies(Set<MavenProject>, boolean, boolean, Set<String>, String...) - Method in class org.scijava.minimaven.MavenProject
 
getDescription() - Method in class org.scijava.AbstractBasicDetails
 
getDescription() - Method in interface org.scijava.BasicDetails
Gets a string describing the object.
getDescription() - Method in class org.scijava.command.CommandModuleItem
 
getDescription() - Method in class org.scijava.command.DynamicCommandInfo
 
getDescription() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getDescription() - Method in interface org.scijava.tool.Tool
Returns the text the tool provides when mouse hovers over tool
getDescriptor() - Method in class org.scijava.io.event.IOEvent
Gets the data descriptor (source or destination).
getDesktop() - Method in class org.scijava.ui.swing.mdi.SwingMdiUI
 
getDesktop() - Method in interface org.scijava.ui.UserInterface
Gets the desktop, for use with multi-document interfaces (MDI), or null if not applicable.
getDestination() - Method in class org.scijava.io.event.DataSavedEvent
Gets the destination to which data was saved.
getDirectDependencies() - Method in class org.scijava.minimaven.MavenProject
 
getDirectory() - Method in class org.scijava.minimaven.MavenProject
 
getDisableChecksums() - Method in class org.scijava.grab.DefaultGrabService
 
getDisableChecksums() - Method in interface org.scijava.grab.GrabService
Global flag to ignore checksums.
getDisplay(String) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplay(String) - Method in interface org.scijava.display.DisplayService
Gets a display by its name.
getDisplay() - Method in class org.scijava.display.event.DisplayEvent
 
getDisplay() - Method in class org.scijava.input.DefaultInputService
 
getDisplay() - Method in interface org.scijava.input.InputService
Gets the display associated with the last observed mouse cursor.
getDisplay() - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel
 
getDisplay() - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
getDisplay() - Method in class org.scijava.ui.viewer.AbstractDisplayViewer
 
getDisplay() - Method in interface org.scijava.ui.viewer.DisplayPanel
Gets the panel's associated display.
getDisplay() - Method in interface org.scijava.ui.viewer.DisplayViewer
Gets the display being viewed.
getDisplay() - Method in class org.scijava.ui.viewer.table.AbstractTableDisplayViewer
 
getDisplay() - Method in interface org.scijava.ui.viewer.table.TableDisplayPanel
 
getDisplay() - Method in interface org.scijava.ui.viewer.table.TableDisplayViewer
 
getDisplay() - Method in class org.scijava.ui.viewer.text.AbstractTextDisplayViewer
 
getDisplay() - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel
 
getDisplay() - Method in interface org.scijava.ui.viewer.text.TextDisplayViewer
 
getDisplayPlugin(Class<D>) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplayPlugin(String) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplayPlugin(Class<D>) - Method in interface org.scijava.display.DisplayService
Gets the display plugin of the given class, or null if none.
getDisplayPlugin(String) - Method in interface org.scijava.display.DisplayService
Gets the display plugin of the given class name, or null if none.
getDisplayPlugins() - Method in class org.scijava.display.DefaultDisplayService
 
getDisplayPlugins() - Method in interface org.scijava.display.DisplayService
Gets the list of known display plugins.
getDisplayPluginsOfType(Class<D>) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplayPluginsOfType(Class<DT>) - Method in interface org.scijava.display.DisplayService
Gets the list of display plugins of the given type (e.g., ImageDisplay.class).
getDisplays() - Method in class org.scijava.display.DefaultDisplayService
 
getDisplays(Object) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplays() - Method in interface org.scijava.display.DisplayService
Gets a list of all available displays.
getDisplays(Object) - Method in interface org.scijava.display.DisplayService
Gets a list of displays currently visualizing the given object.
getDisplaysOfType(Class<D>) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplaysOfType(Class<DT>) - Method in interface org.scijava.display.DisplayService
Gets a list of all available displays of the given type (e.g., ImageDisplay.class).
getDisplayViewer(Display<?>) - Method in class org.scijava.ui.DefaultUIService
 
getDisplayViewer(Display<?>) - Method in interface org.scijava.ui.UIService
Gets the UI widget being used to visualize the given Display.
getDocument() - Method in class org.scijava.util.XML
Gets the XML's DOM representation.
getDouble(Class<?>, String, double) - Method in class org.scijava.prefs.DefaultPrefService
 
getDouble(Class<?>, String, double) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a double.
getDouble(String, double) - Method in interface org.scijava.prefs.PrefService
getDouble(String, double) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getDouble(Class<?>, String, double) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getDownloadAutomatically() - Method in class org.scijava.minimaven.BuildEnvironment
 
getEnableAutoDownload() - Method in class org.scijava.grab.DefaultGrabService
 
getEnableAutoDownload() - Method in interface org.scijava.grab.GrabService
This is a static access auto download enabler.
getEncoding() - Method in class org.scijava.io.handle.AbstractDataHandle
 
getEncoding() - Method in interface org.scijava.io.handle.DataHandle
Gets the native encoding of the stream.
getEngine() - Method in class org.scijava.plugins.scripting.groovy.GroovyCompiledScript
 
getEngine() - Method in class org.scijava.script.DefaultScriptInterpreter
 
getEngine() - Method in interface org.scijava.script.ScriptInterpreter
Returns the associated ScriptEngine.
getEngine() - Method in class org.scijava.script.ScriptModule
Gets the script engine used to execute the script.
getEngineName() - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
getEngineName() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getEngineName() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getEngineName() - Method in class org.scijava.script.AbstractScriptLanguage
 
getEngineName() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getEngineVersion() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getEngineVersion() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getEngineVersion() - Method in interface org.scijava.script.ScriptLanguage
 
getEnvironmentVariables() - Static method in class org.scijava.plugins.commands.debug.SystemInformation
 
getErr() - Method in class org.scijava.minimaven.BuildEnvironment
 
getErrorWriter() - Method in class org.scijava.script.AbstractScriptContext
 
getEventClass() - Method in interface org.scijava.event.EventSubscriber
 
getEventService() - Method in interface org.scijava.command.CommandService
Deprecated.
getEventService() - Method in interface org.scijava.display.DisplayService
Deprecated.
getEventService() - Method in interface org.scijava.input.InputService
Deprecated.
getEventService() - Method in interface org.scijava.object.ObjectService
Deprecated.
getEventService() - Method in interface org.scijava.platform.PlatformService
Deprecated.
getEventString() - Method in class org.scijava.event.EventDetails
 
getEventType() - Method in class org.scijava.event.EventDetails
 
getExceptions() - Method in class org.scijava.plugin.PluginIndex
Gets the exceptions which occurred during the last invocation of PluginIndex.discover().
getExecutorService() - Method in class org.scijava.thread.DefaultThreadService
 
getExecutorService() - Method in interface org.scijava.thread.ThreadService
getExtension(File) - Static method in class org.scijava.util.FileUtils
Extracts the file extension from a file.
getExtension(String) - Static method in class org.scijava.util.FileUtils
Extracts the file extension from a file path.
getExtensions() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.scripting.matlab.MATLABScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.text.markdown.MarkdownTextFormat
 
getExtensions() - Method in class org.scijava.plugins.text.plain.PlainTextFormat
 
getExtensions() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getExtensions() - Method in interface org.scijava.script.ScriptLanguage
 
getExtensions() - Method in interface org.scijava.text.TextFormat
Gets the list of filename extensions for text in this format.
getFactory() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
getFactory() - Method in class org.scijava.script.AbstractScriptEngine
 
getFactory() - Method in class org.scijava.script.AdaptedScriptEngine
 
getField() - Method in class org.scijava.command.CommandModuleItem
 
getField(String, String) - Static method in class org.scijava.util.ClassUtils
getField(Class<?>, String) - Static method in class org.scijava.util.ClassUtils
getFieldClasses(Field, Class<?>) - Static method in class org.scijava.util.GenericUtils
getFieldName(Class<?>, int) - Static method in class org.scijava.util.DebugUtils
This method uses reflection to scan the values of the given class's static fields, returning the first matching field's name.
getFieldType(Field, Class<?>) - Static method in class org.scijava.util.GenericUtils
Deprecated.
getFile() - Method in class org.scijava.io.location.FileLocation
Gets the associated File.
getFileExtensions(ScriptLanguage) - Method in class org.scijava.script.ScriptLanguageIndex
 
getFileName(boolean, String) - Method in class org.scijava.minimaven.Coordinate
 
getFileName(boolean, boolean, String) - Method in class org.scijava.minimaven.Coordinate
 
getFiles() - Method in class org.scijava.platform.event.AppOpenFilesEvent
 
getFiles(TransferHandler.TransferSupport) - Static method in class org.scijava.ui.swing.widget.SwingFileWidget
Gets the list of files associated with the given drag and drop operation.
getFloat(Class<?>, String, float) - Method in class org.scijava.prefs.DefaultPrefService
 
getFloat(Class<?>, String, float) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a float.
getFloat(String, float) - Method in interface org.scijava.prefs.PrefService
getFloat(String, float) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getFloat(Class<?>, String, float) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getFocus() - Method in class org.scijava.ui.swing.SwingDialog
Gets the Component that will have the initial keyboard focus.
getFromClipboard() - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
getGAV() - Method in class org.scijava.minimaven.Coordinate
 
getGAV() - Method in class org.scijava.minimaven.MavenProject
 
getGenericType() - Method in class org.scijava.command.CommandModuleItem
 
getGenericType() - Method in class org.scijava.module.AbstractModuleItem
 
getGenericType() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getGenericType() - Method in interface org.scijava.module.ModuleItem
Gets the type of the item, including Java generic parameters.
getGenericType(Field, Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
getGreen(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getGreen() - Method in class org.scijava.util.ColorRGB
 
getGroupId() - Method in interface org.scijava.app.App
The Maven groupId of the application.
getGroupId() - Method in class org.scijava.app.SciJavaApp
 
getGroupId() - Method in class org.scijava.minimaven.Coordinate
 
getGroupId() - Method in class org.scijava.minimaven.MavenProject
 
getGroupId() - Method in class org.scijava.util.POM
Gets the POM's groupId.
getHandler(Object, Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getHandler(Class<?>, Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getHandler(Object, Type) - Method in class org.scijava.convert.AbstractConvertService
 
getHandler(Class<?>, Type) - Method in class org.scijava.convert.AbstractConvertService
 
getHandler(Object, Class<?>) - Method in interface org.scijava.convert.ConvertService
 
getHandler(Object, Type) - Method in interface org.scijava.convert.ConvertService
 
getHandler(Class<?>, Class<?>) - Method in interface org.scijava.convert.ConvertService
getHandler(Class<?>, Type) - Method in interface org.scijava.convert.ConvertService
getHandler(DT) - Method in interface org.scijava.plugin.HandlerService
Gets the most appropriate handler for the given data object, or null if no handler supports it.
getHandler(File) - Method in interface org.scijava.text.TextService
Gets the text format which best handles the given file.
getHandler(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Gets the drag-and-drop handler which will be used to handle the given DragAndDropData dragged onto the specified display.
getHandler(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Gets the drag-and-drop handler which will be used to handle the given object dragged onto the specified display.
getHeader() - Method in class org.scijava.plugins.scripting.jruby.JRubyScriptHeader
 
getHeader() - Method in interface org.scijava.script.ScriptHeader
 
getHeader(ScriptLanguage) - Method in interface org.scijava.script.ScriptHeaderService
Searches for all ScriptHeaders capable of handling the given ScriptLanguage and combines the result of their ScriptHeader.getHeader() output to a single string.
getHeader() - Method in class org.scijava.table.BoolColumn
 
getHeader() - Method in class org.scijava.table.ByteColumn
 
getHeader() - Method in class org.scijava.table.CharColumn
 
getHeader() - Method in interface org.scijava.table.Column
Gets the header of this column.
getHeader() - Method in class org.scijava.table.DefaultColumn
 
getHeader() - Method in class org.scijava.table.DoubleColumn
 
getHeader() - Method in class org.scijava.table.FloatColumn
 
getHeader() - Method in class org.scijava.table.IntColumn
 
getHeader() - Method in class org.scijava.table.LongColumn
 
getHeader() - Method in class org.scijava.table.ShortColumn
 
getHeight() - Method in class org.scijava.ui.ARGBPlane
 
getIconPath() - Method in class org.scijava.AbstractUIDetails
 
getIconPath() - Method in class org.scijava.command.DynamicCommandInfo
 
getIconPath() - Method in class org.scijava.MenuEntry
 
getIconPath() - Method in interface org.scijava.UIDetails
Gets the resource path to an icon representing the object.
getIconRectangleHeight() - Method in interface org.scijava.tool.IconDrawer
 
getIconRectangleWidth() - Method in interface org.scijava.tool.IconDrawer
 
getIconURL() - Method in class org.scijava.command.CommandInfo
 
getIconURL() - Method in class org.scijava.menu.ShadowMenu
Gets the URL of the icon associated with this node's MenuEntry.
getIconURL() - Method in class org.scijava.plugin.PluginInfo
Gets the URL corresponding to the icon resource path.
getIdentifier() - Method in class org.scijava.command.CommandInfo
 
getIdentifier() - Method in interface org.scijava.Identifiable
Gets a string intended to function as an identifier for the object.
getIdentifier() - Method in interface org.scijava.module.ModuleInfo
 
getIdentifier() - Method in class org.scijava.plugin.PluginInfo
 
getIdentifier() - Method in interface org.scijava.plugin.RichPlugin
 
getIdentifier() - Method in class org.scijava.script.ScriptInfo
 
getImplementationBuild(File) - Method in class org.scijava.minimaven.BuildEnvironment
 
getImplementationBuild() - Method in class org.scijava.util.Manifest
 
getImplementationDate() - Method in class org.scijava.util.Manifest
 
getImplementationTitle() - Method in class org.scijava.util.Manifest
 
getImplementationVendor() - Method in class org.scijava.util.Manifest
 
getImplementationVendorId() - Method in class org.scijava.util.Manifest
 
getImplementationVersion() - Method in class org.scijava.util.Manifest
 
getIndex() - Method in class org.scijava.module.DefaultModuleService
 
getIndex() - Method in interface org.scijava.module.ModuleService
Gets the index of available modules.
getIndex() - Method in class org.scijava.object.DefaultObjectService
 
getIndex() - Method in interface org.scijava.object.ObjectService
Gets the index of available objects.
getIndex() - Method in class org.scijava.plugin.DefaultPluginService
 
getIndex() - Method in interface org.scijava.plugin.PluginService
Gets the index of available plugins.
getIndex() - Method in class org.scijava.script.DefaultScriptService
 
getIndex() - Method in interface org.scijava.script.ScriptService
Gets the index of available scripting languages.
getInfo(boolean) - Method in class org.scijava.AbstractGateway
 
getInfo(boolean) - Method in interface org.scijava.app.App
Gets a string with information about the application.
getInfo() - Method in class org.scijava.command.CommandModule
 
getInfo() - Method in class org.scijava.command.DynamicCommand
 
getInfo() - Method in class org.scijava.command.ModuleCommand
 
getInfo(boolean) - Method in interface org.scijava.Gateway
 
getInfo() - Method in class org.scijava.module.AbstractModuleItem
 
getInfo() - Method in class org.scijava.module.DefaultMutableModule
 
getInfo() - Method in interface org.scijava.module.Module
Gets metadata about this module.
getInfo() - Method in interface org.scijava.module.ModuleItem
Gets the ModuleInfo to which this item belongs.
getInfo() - Method in interface org.scijava.module.MutableModule
 
getInfo() - Method in class org.scijava.plugin.AbstractRichPlugin
 
getInfo() - Method in interface org.scijava.plugin.HasPluginInfo
Gets the PluginInfo metadata associated with the object.
getInfo() - Method in class org.scijava.script.ScriptModule
 
getInitializer() - Method in class org.scijava.command.CommandInfo
 
getInitializer() - Method in class org.scijava.command.CommandModuleItem
 
getInitializer() - Method in class org.scijava.command.DynamicCommandInfo
 
getInitializer() - Method in class org.scijava.module.AbstractModuleItem
 
getInitializer() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getInitializer() - Method in interface org.scijava.module.ModuleInfo
Gets the function that is called to initialize the module's values.
getInitializer() - Method in interface org.scijava.module.ModuleItem
Gets the function that is called to initialize the item's value.
getInput(String) - Method in class org.scijava.command.CommandInfo
 
getInput(String, Class<T>) - Method in class org.scijava.command.CommandInfo
 
getInput(String) - Method in class org.scijava.command.CommandModule
 
getInput(String) - Method in class org.scijava.command.DynamicCommand
 
getInput(String) - Method in class org.scijava.module.AbstractModule
 
getInput(String) - Method in class org.scijava.module.AbstractModuleInfo
 
getInput(String, Class<T>) - Method in class org.scijava.module.AbstractModuleInfo
 
getInput(String) - Method in interface org.scijava.module.Module
Gets the value of the input with the given name.
getInput(String) - Method in interface org.scijava.module.ModuleInfo
Gets the input item with the given name.
getInput(String, Class<T>) - Method in interface org.scijava.module.ModuleInfo
Gets the input item with the given name and type.
getInputField(String) - Method in class org.scijava.command.DynamicCommandInfo
Gets the Field corresponding to the given @Parameter annotated module input, or null if the input does not exist or was not declared using the @Parameter mechanism.
getInputFile() - Method in class org.scijava.plugins.commands.io.OpenFile
 
getInputs() - Method in class org.scijava.module.AbstractModule
 
getInputs() - Method in interface org.scijava.module.Module
Gets a table of input values.
getInputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayWrapper
 
getInputType() - Method in class org.scijava.convert.CastingConverter
 
getInputType() - Method in interface org.scijava.convert.Converter
 
getInputType() - Method in class org.scijava.convert.DefaultConverter
 
getInputType() - Method in class org.scijava.convert.FileListConverters.FileArrayToStringConverter
 
getInputType() - Method in class org.scijava.convert.FileListConverters.FileToStringConverter
 
getInputType() - Method in class org.scijava.convert.FileListConverters.StringToFileArrayConverter
 
getInputType() - Method in class org.scijava.convert.FileListConverters.StringToFileConverter
 
getInputType() - Method in class org.scijava.convert.NullConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.BigIntegerToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToBigIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToDoubleConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToFloatConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToLongConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToShortConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.DoubleToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.FloatToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.FloatToDoubleConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToBigIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToDoubleConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToLongConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.LongToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.LongToBigIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToBigIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToDoubleConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToFloatConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToLongConverter
 
getInstance(Class<P>) - Method in class org.scijava.plugin.AbstractSingletonService
 
getInstance(Class<P>) - Method in interface org.scijava.plugin.SingletonService
Gets the singleton plugin instance of the given class.
getInstances() - Method in class org.scijava.options.DefaultOptionsService
 
getInstances() - Method in class org.scijava.plugin.AbstractSingletonService
 
getInstances() - Method in interface org.scijava.plugin.HandlerService
Gets the list of handlers.
getInstances() - Method in interface org.scijava.plugin.SingletonService
Gets the list of plugin instances.
getInstances() - Method in interface org.scijava.text.TextService
Gets the list of available text formats.
getInstances() - Method in interface org.scijava.ui.dnd.DragAndDropService
Gets the list of available drag-and-drop handlers, which are used to perform drag-and-drop operations.
getInt(Class<?>, String, int) - Method in class org.scijava.prefs.DefaultPrefService
 
getInt(Class<?>, String, int) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as an int.
getInt(String, int) - Method in interface org.scijava.prefs.PrefService
getInt(String, int) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getInt(Class<?>, String, int) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getInterface(Class<T>) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
getInterface(Object, Class<T>) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
getInterpretedLanguages() - Method in class org.scijava.script.ScriptREPL
Gets the list of languages compatible with the REPL.
getInterpreter() - Method in class org.scijava.script.ScriptREPL
Gets the script interpreter for the currently active language.
getIntX() - Method in class org.scijava.util.RealCoords
 
getIntY() - Method in class org.scijava.util.RealCoords
 
getIOType() - Method in class org.scijava.command.CommandModuleItem
 
getIOType() - Method in class org.scijava.module.AbstractModuleItem
 
getIOType() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getIOType() - Method in interface org.scijava.module.ModuleItem
Gets the input/output type of the item.
getIssueManagementSystem() - Method in class org.scijava.util.POM
Gets the issue management system.
getIssueManagementURL() - Method in class org.scijava.util.POM
Gets the issue management URL.
getItem() - Method in class org.scijava.widget.DefaultWidgetModel
 
getItem() - Method in interface org.scijava.widget.WidgetModel
Gets the module input's associated item descriptor.
getItems() - Method in class org.scijava.object.event.ListEvent
Gets the list of affected items.
getIterable(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
getIterable(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
getIterable(String) - Method in interface org.scijava.prefs.PrefService
getJarName() - Method in class org.scijava.minimaven.Coordinate
 
getJarName(boolean) - Method in class org.scijava.minimaven.Coordinate
 
getJarName() - Method in class org.scijava.minimaven.MavenProject
 
getJavaValue(SEXP) - Static method in class org.scijava.plugins.scripting.renjin.RenjinUtils
Extracts a value from the specified R variable.
getJniDir() - Method in class org.scijava.nativelib.BaseJniExtractor
this is where JNI libraries are extracted to (e.g.
getJniDir() - Method in class org.scijava.nativelib.DefaultJniExtractor
 
getJniDir() - Method in class org.scijava.nativelib.WebappJniExtractor
 
getJniExtractor() - Static method in class org.scijava.nativelib.NativeLoader
 
getKey() - Method in class org.scijava.minimaven.Coordinate
 
getKeyCode() - Method in class org.scijava.input.Accelerator
 
getLabel() - Method in class org.scijava.AbstractBasicDetails
 
getLabel() - Method in interface org.scijava.BasicDetails
Gets the name to appear in a UI, if applicable.
getLabel() - Method in class org.scijava.command.CommandModuleItem
 
getLabel() - Method in class org.scijava.command.DynamicCommandInfo
 
getLabel() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getLanguage() - Method in class org.scijava.script.DefaultScriptInterpreter
 
getLanguage() - Method in class org.scijava.script.ScriptInfo
Gets the scripting language of the script.
getLanguage() - Method in interface org.scijava.script.ScriptInterpreter
Returns the associated ScriptLanguage.
getLanguage() - Method in class org.scijava.script.ScriptModule
Deprecated.
getLanguageByExtension(String) - Method in interface org.scijava.script.ScriptService
Gets the scripting language that handles the given file extension.
getLanguageByName(String) - Method in interface org.scijava.script.ScriptService
Gets the scripting language with the given name.
getLanguageName() - Method in class org.scijava.script.AbstractScriptLanguage
 
getLanguageName() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getLanguages() - Method in interface org.scijava.script.ScriptService
Gets the available scripting languages.
getLanguageVersion() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getLanguageVersion() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getLanguageVersion() - Method in interface org.scijava.script.ScriptLanguage
 
getLastX() - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
Gets the last known mouse X coordinate.
getLastY() - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
Gets the last known mouse Y coordinate.
getLeaf() - Method in class org.scijava.MenuPath
Gets the final element of the menu path.
getLevel() - Method in class org.scijava.display.event.DisplayUpdatedEvent
 
getLevel() - Method in class org.scijava.log.AbstractLogService
 
getLevel() - Method in class org.scijava.log.DefaultLogger
 
getLevel() - Method in interface org.scijava.log.Logger
Returns the log level of this logger.
getList(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
 
getList(Class<?>) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
getList(String, String) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
getList(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a List.
getList(Class<?>) - Method in interface org.scijava.prefs.PrefService
getList(String) - Method in interface org.scijava.prefs.PrefService
getList(String, String) - Method in interface org.scijava.prefs.PrefService
getList(String) - Static method in class org.scijava.util.Prefs
Deprecated.
Gets a List from the preferences.
getList(Preferences, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getList(Preferences) - Static method in class org.scijava.util.Prefs
Deprecated.
Gets a List from the preferences.
getLocation() - Method in interface org.scijava.Locatable
Gets the URL string defining the object's location.
getLocation() - Method in interface org.scijava.module.ModuleInfo
 
getLocation() - Method in class org.scijava.plugin.PluginInfo
 
getLocation() - Method in class org.scijava.script.ScriptInfo
 
getLocation(String) - Static method in class org.scijava.util.ClassUtils
getLocation(String, ClassLoader) - Static method in class org.scijava.util.ClassUtils
getLocation(Class<?>) - Static method in class org.scijava.util.ClassUtils
getLocationX() - Method in interface org.scijava.ui.ApplicationFrame
Gets the X coordinate of the application frame's top left corner.
getLocationX() - Method in class org.scijava.ui.awt.AWTApplicationFrame
 
getLocationX() - Method in class org.scijava.ui.swing.SwingApplicationFrame
 
getLocationY() - Method in interface org.scijava.ui.ApplicationFrame
Gets the Y coordinate of the application frame's top left corner.
getLocationY() - Method in class org.scijava.ui.awt.AWTApplicationFrame
 
getLocationY() - Method in class org.scijava.ui.swing.SwingApplicationFrame
 
getLogger() - Method in class org.scijava.log.slf4j.SLF4JLogService
 
getLong(Class<?>, String, long) - Method in class org.scijava.prefs.DefaultPrefService
 
getLong(Class<?>, String, long) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a long.
getLong(String, long) - Method in interface org.scijava.prefs.PrefService
getLong(String, long) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getLong(Class<?>, String, long) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getLongX() - Method in class org.scijava.util.RealCoords
 
getLongY() - Method in class org.scijava.util.RealCoords
 
getLookAndFeel() - Method in class org.scijava.ui.swing.options.OptionsLookAndFeel
 
getMainClass() - Method in class org.scijava.minimaven.MavenProject
 
getMainClass() - Static method in class org.scijava.util.AppUtils
Gets the class whose main method launched the application.
getMainClassName() - Static method in class org.scijava.util.DebugUtils
Get the class whose main method launched the application.
getMains() - Method in class org.scijava.main.DefaultMainService
 
getMains() - Method in interface org.scijava.main.MainService
Gets the registered main classes to execute.
getManifest() - Method in class org.scijava.app.AbstractApp
 
getManifest() - Method in interface org.scijava.app.App
Gets the manifest containing metadata about the application.
getManifest(Class<?>) - Static method in class org.scijava.util.Manifest
Gets the JAR manifest associated with the given class.
getManifest(XML) - Static method in class org.scijava.util.Manifest
Gets the JAR manifest associated with the given XML document.
getManifest(File) - Static method in class org.scijava.util.Manifest
Gets the JAR manifest associated with the given JAR file.
getManifestData(Manifest) - Static method in class org.scijava.plugins.commands.debug.SystemInformation
 
getManifestVersion() - Method in class org.scijava.util.Manifest
 
getMap(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
 
getMap(Class<?>) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
getMap(String, String) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
getMap(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a Map.
getMap(Class<?>) - Method in interface org.scijava.prefs.PrefService
getMap(String) - Method in interface org.scijava.prefs.PrefService
getMap(String, String) - Method in interface org.scijava.prefs.PrefService
getMap(String) - Static method in class org.scijava.util.Prefs
Deprecated.
Gets a Map from the preferences.
getMap(Preferences, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getMap(Preferences) - Static method in class org.scijava.util.Prefs
Deprecated.
Gets a Map from the preferences.
getMatches() - Method in class org.scijava.script.AutoCompletionResult
 
getMax() - Method in class org.scijava.widget.DefaultWidgetModel
 
getMax() - Method in interface org.scijava.widget.WidgetModel
Gets the maximum value for the module input.
getMaxBufferSize() - Method in class org.scijava.io.ByteArrayByteBank
 
getMaxBufferSize() - Method in interface org.scijava.io.ByteBank
 
getMaxBufferSize() - Method in class org.scijava.io.nio.ByteBufferByteBank
 
getMaximum() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getMaximumGrowth() - Method in class org.scijava.util.AbstractPrimitiveArray
 
getMaximumGrowth() - Method in interface org.scijava.util.PrimitiveArray
Gets the maximal step size by which to grow the fixed-size array when running out of space.
getMaximumNumber(Class<?>) - Static method in class org.scijava.util.NumberUtils
 
getMaximumValue() - Method in class org.scijava.command.CommandModuleItem
 
getMaximumValue() - Method in class org.scijava.module.AbstractModuleItem
 
getMaximumValue() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getMaximumValue() - Method in interface org.scijava.module.ModuleItem
Gets the maximum allowed value (if applicable).
getMenu(String) - Method in class org.scijava.menu.DefaultMenuService
 
getMenu() - Method in interface org.scijava.menu.MenuService
Gets the root node of the application menu structure.
getMenu(String) - Method in interface org.scijava.menu.MenuService
Gets the root node of a menu structure.
getMenu(MenuPath) - Method in class org.scijava.menu.ShadowMenu
Gets the node with the given menu path (relative to this node), or null if no such menu node.
getMenu(String) - Method in class org.scijava.menu.ShadowMenu
 
getMenuDepth() - Method in class org.scijava.menu.ShadowMenu
Gets how deep into the menu structure this node is.
getMenuEntry() - Method in class org.scijava.menu.ShadowMenu
Gets the menu entry corresponding to this node.
getMenuPath() - Method in class org.scijava.AbstractUIDetails
 
getMenuPath() - Method in class org.scijava.command.DynamicCommandInfo
 
getMenuPath() - Method in interface org.scijava.UIDetails
Gets the path to the object's suggested position in the menu structure.
getMenuPrefix(File) - Method in class org.scijava.script.DefaultScriptService
 
getMenuPrefix(File) - Method in interface org.scijava.script.ScriptService
Gets the menu path prefix for the given script directory, or null if none.
getMenuRoot() - Method in class org.scijava.AbstractUIDetails
 
getMenuRoot() - Method in class org.scijava.command.DynamicCommandInfo
 
getMenuRoot() - Method in interface org.scijava.UIDetails
Gets the name of the menu structure to which the object belongs.
getMenus() - Method in class org.scijava.platform.event.AppMenusCreatedEvent
 
getMenuString() - Method in class org.scijava.MenuPath
Gets the menu path as a string.
getMenuString(boolean) - Method in class org.scijava.MenuPath
Gets the menu path as a string, with or without the final element.
getMethodCallSyntax(String, String, String...) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getMethodCallSyntax(String, String, String...) - Method in class org.scijava.script.AdaptedScriptLanguage
 
getMethodCallSyntax(String, String, String...) - Method in interface org.scijava.script.ScriptLanguage
 
getMethodReturnClasses(Method, Class<?>) - Static method in class org.scijava.util.GenericUtils
getMethodReturnType(Method, Class<?>) - Static method in class org.scijava.util.GenericUtils
getMillis() - Method in class org.scijava.util.TunePlayer
Gets the current note length in milliseconds, by the current tempo.
getMIMEType(Class<?>) - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets the best supported MIME type matching the given Java class.
getMimeTypes() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getMimeTypes() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getMimeTypes() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getMimeTypes() - Method in interface org.scijava.script.ScriptLanguage
 
getMIMETypes() - Method in class org.scijava.ui.awt.AWTDragAndDropData
 
getMIMETypes() - Method in class org.scijava.ui.dnd.DefaultDragAndDropData
 
getMIMETypes() - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets the list of supported MIME types.
getMin() - Method in class org.scijava.widget.DefaultWidgetModel
 
getMin() - Method in interface org.scijava.widget.WidgetModel
Gets the minimum value for the module input.
getMinimum() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getMinimumNumber(Class<?>) - Static method in class org.scijava.util.NumberUtils
 
getMinimumValue() - Method in class org.scijava.command.CommandModuleItem
 
getMinimumValue() - Method in class org.scijava.module.AbstractModuleItem
 
getMinimumValue() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getMinimumValue() - Method in interface org.scijava.module.ModuleItem
Gets the minimum allowed value (if applicable).
getMiscellany() - Static method in class org.scijava.plugins.commands.debug.SystemInformation
 
getMnemonic() - Method in class org.scijava.MenuEntry
 
getMode() - Method in class org.scijava.io.handle.FileHandle
 
getModifiedTime(File) - Static method in class org.scijava.util.FileUtils
Gets the Date of the file's last modification.
getModifiers() - Method in class org.scijava.display.event.input.InputEvent
 
getModifiers() - Method in class org.scijava.input.Accelerator
 
getModifiers() - Method in class org.scijava.input.DefaultInputService
 
getModifiers() - Method in interface org.scijava.input.InputService
 
getModule() - Method in class org.scijava.module.event.ModuleEvent
 
getModule() - Method in class org.scijava.widget.DefaultWidgetModel
 
getModule() - Method in interface org.scijava.widget.WidgetModel
Gets the module's associated module instance.
getModuleById(String) - Method in class org.scijava.module.DefaultModuleService
 
getModuleById(String) - Method in interface org.scijava.module.ModuleService
Gets the module with the given identifier string.
getModuleClass() - Method in class org.scijava.module.DefaultMutableModuleInfo
 
getModuleClass() - Method in interface org.scijava.module.MutableModuleInfo
Gets the module class described by this ModuleInfo.
getModuleForAccelerator(Accelerator) - Method in class org.scijava.module.DefaultModuleService
 
getModuleForAccelerator(Accelerator) - Method in interface org.scijava.module.ModuleService
Gets the module for a given keyboard shortcut.
getModuleInfo() - Method in class org.scijava.menu.ShadowMenu
Gets the module linked to this node, or null if node is not a leaf.
getModules() - Method in class org.scijava.module.DefaultModuleService
 
getModules() - Method in interface org.scijava.module.ModuleService
Gets the list of available modules.
getModuleService() - Method in interface org.scijava.command.CommandService
Deprecated.
getMutableInput(String, Class<T>) - Method in class org.scijava.command.DynamicCommandInfo
Gets the mutable input with the given name and type.
getMutableOutput(String, Class<T>) - Method in class org.scijava.command.DynamicCommandInfo
Gets the mutable output with the given name and type.
getMxSysInfo() - Static method in class org.scijava.nativelib.MxSysInfo
Find the mx.sysinfo string for the current jvm
getName() - Method in class org.scijava.AbstractBasicDetails
 
getName() - Method in class org.scijava.command.CommandModuleItem
 
getName() - Method in class org.scijava.command.DynamicCommandInfo
 
getName() - Method in class org.scijava.display.AbstractDisplay
 
getName() - Method in class org.scijava.io.location.FileLocation
 
getName() - Method in interface org.scijava.io.location.Location
Gets a (typically short) name expressing this location.
getName() - Method in interface org.scijava.log.Logger
Returns the name of this logger.
getName() - Method in class org.scijava.menu.ShadowMenu
 
getName() - Method in class org.scijava.MenuEntry
 
getName() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getName() - Method in interface org.scijava.Named
Gets the name of the object.
getName() - Method in class org.scijava.task.DefaultTask
 
getName(ColorRGB) - Static method in class org.scijava.util.Colors
Gets the name of the preset matching the given color.
getNames() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getNames() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getNames() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getNames() - Method in interface org.scijava.script.ScriptLanguage
 
getNativeDir() - Method in class org.scijava.nativelib.BaseJniExtractor
this is where native dependencies are extracted to (e.g.
getNativeDir() - Method in class org.scijava.nativelib.DefaultJniExtractor
 
getNativeDir() - Method in class org.scijava.nativelib.WebappJniExtractor
 
getNextService(Class<S>, Class<? extends S>) - Method in class org.scijava.service.ServiceIndex
Gets the highest priority service compatible with class c, which is lower priority than the ref service.
getNextValue() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getNonprimitiveType(Class<T>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
getNonprimitiveType(Class<T>) - Static method in class org.scijava.util.ConversionUtils
getNoteLength() - Method in class org.scijava.util.TunePlayer
 
getNullValue(Class<T>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
getNullValue(Class<T>) - Static method in class org.scijava.util.ConversionUtils
Deprecated.
getNumber() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getNumClicks() - Method in class org.scijava.display.event.input.MsButtonEvent
 
getObject() - Method in class org.scijava.display.event.DisplayCreatedEvent
 
getObject() - Method in class org.scijava.display.event.DisplayDeletedEvent
 
getObject() - Method in class org.scijava.object.event.ObjectEvent
 
getObjectPool() - Method in class org.scijava.widget.DefaultWidgetModel
 
getObjectPool() - Method in interface org.scijava.widget.WidgetModel
Gets the available objects for use with the widget.
getObjects(Class<T>) - Method in class org.scijava.object.DefaultObjectService
 
getObjects(Class<T>) - Method in interface org.scijava.object.ObjectService
Gets a list of all registered objects compatible with the given type.
getObjectService() - Method in interface org.scijava.display.DisplayService
Deprecated.
getOctave() - Method in class org.scijava.util.TunePlayer
 
getOpener(String) - Method in interface org.scijava.io.IOService
Gets the most appropriate IOPlugin for opening data from the given source.
getOptions(Class<O>) - Method in class org.scijava.options.DefaultOptionsService
 
getOptions() - Method in class org.scijava.options.event.OptionsEvent
 
getOptions(Class<O>) - Method in interface org.scijava.options.