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about() - Method in class org.scijava.app.AbstractApp

 

about() - Method in interface org.scijava.app.App

Displays information about the application.

about() - Method in interface org.scijava.platform.AppEventService

Deprecated.

Use App.about() instead.

about() - Method in class org.scijava.platform.DefaultAppEventService

Deprecated.

 

AbstractApp - Class in org.scijava.app

Abstract superclass of App implementations.

AbstractApp() - Constructor for class org.scijava.app.AbstractApp

 

AbstractAutoCompleter - Class in org.scijava.script

Abstract base class for AutoCompleter implementations.

AbstractAutoCompleter(ScriptLanguage) - Constructor for class org.scijava.script.AbstractAutoCompleter

 

AbstractAWTMenuCreator<T> - Class in org.scijava.ui.awt.menu

Populates an AWT menu structure with menu items from a ShadowMenu.

AbstractAWTMenuCreator() - Constructor for class org.scijava.ui.awt.menu.AbstractAWTMenuCreator

 

AbstractBasicDetails - Class in org.scijava

Abstract superclass of BasicDetails implementations.

AbstractBasicDetails() - Constructor for class org.scijava.AbstractBasicDetails

 

AbstractCodeRunner - Class in org.scijava.run

Abstract superclass of CodeRunner implementations.

AbstractCodeRunner() - Constructor for class org.scijava.run.AbstractCodeRunner

 

AbstractConsoleArgument - Class in org.scijava.console

Abstract superclass of ConsoleArgument implementations.

AbstractConsoleArgument() - Constructor for class org.scijava.console.AbstractConsoleArgument

 

AbstractConsoleArgument(String...) - Constructor for class org.scijava.console.AbstractConsoleArgument

 

AbstractConsoleArgument(int, String...) - Constructor for class org.scijava.console.AbstractConsoleArgument

 

AbstractConsolePane<C> - Class in org.scijava.ui.console

Abstract base class of ConsolePane implementations.

AbstractConsolePane(Context) - Constructor for class org.scijava.ui.console.AbstractConsolePane

 

AbstractContextual - Class in org.scijava

Abstract base class for Contextual objects.

AbstractContextual() - Constructor for class org.scijava.AbstractContextual

 

AbstractConverter<I,O> - Class in org.scijava.convert

Abstract superclass for Converter plugins.

AbstractConverter() - Constructor for class org.scijava.convert.AbstractConverter

 

AbstractConvertService - Class in org.scijava.convert

Abstract superclass for ConvertService implementations.

AbstractConvertService() - Constructor for class org.scijava.convert.AbstractConvertService

 

AbstractDataHandle<L extends Location> - Class in org.scijava.io.handle

Abstract base class for DataHandle plugins.

AbstractDataHandle() - Constructor for class org.scijava.io.handle.AbstractDataHandle

 

AbstractDelegateConverter<I,D,O> - Class in org.scijava.convert

Abstract superclass for Converter plugins that delegate to other converters to chain two conversion steps together.

AbstractDelegateConverter() - Constructor for class org.scijava.convert.AbstractDelegateConverter

 

AbstractDisplay<T> - Class in org.scijava.display

Abstract superclass of Display implementations.

AbstractDisplay(Class<T>) - Constructor for class org.scijava.display.AbstractDisplay

 

AbstractDisplayViewer<T> - Class in org.scijava.ui.viewer

The AbstractDisplayViewer provides some basic generic implementations for a DisplayViewer such as storing and providing the display, window and panel for a DisplayViewer.

AbstractDisplayViewer() - Constructor for class org.scijava.ui.viewer.AbstractDisplayViewer

 

AbstractDragAndDropData - Class in org.scijava.ui.dnd

Abstract superclass for DragAndDropData implementations.

AbstractDragAndDropData() - Constructor for class org.scijava.ui.dnd.AbstractDragAndDropData

 

AbstractDragAndDropHandler<D> - Class in org.scijava.ui.dnd

Abstract superclass for DragAndDropHandlers.

AbstractDragAndDropHandler() - Constructor for class org.scijava.ui.dnd.AbstractDragAndDropHandler

 

AbstractEvaluator - Class in org.scijava.parsington.eval

Base class for Evaluator implementations.

AbstractEvaluator() - Constructor for class org.scijava.parsington.eval.AbstractEvaluator

 

AbstractEvaluator(ExpressionParser) - Constructor for class org.scijava.parsington.eval.AbstractEvaluator

 

AbstractGateway - Class in org.scijava

Abstract superclass for Gateway implementations.

AbstractGateway() - Constructor for class org.scijava.AbstractGateway

 

AbstractGateway(String, Context) - Constructor for class org.scijava.AbstractGateway

 

AbstractHandlerPlugin<D> - Class in org.scijava.plugin

Abstract base class for HandlerPlugin implementations.

AbstractHandlerPlugin() - Constructor for class org.scijava.plugin.AbstractHandlerPlugin

 

AbstractHandlerService<DT,PT extends HandlerPlugin<DT>> - Class in org.scijava.plugin

Abstract base class for HandlerServices.

AbstractHandlerService() - Constructor for class org.scijava.plugin.AbstractHandlerService

 

AbstractHigherOrderHandle<L extends Location> - Class in org.scijava.io.handle

Abstract superclass for DataHandles that operate over other DataHandles.

AbstractHigherOrderHandle(DataHandle<L>) - Constructor for class org.scijava.io.handle.AbstractHigherOrderHandle

 

AbstractIndexWriter - Class in org.scijava.annotations

Writes annotations as JSON-formatted files.

AbstractIndexWriter() - Constructor for class org.scijava.annotations.AbstractIndexWriter

 

AbstractIndexWriter.StreamFactory - Interface in org.scijava.annotations

 

AbstractInputHarvester<P,W> - Class in org.scijava.widget

Abstract superclass for InputHarvesters.

AbstractInputHarvester() - Constructor for class org.scijava.widget.AbstractInputHarvester

 

AbstractInputHarvesterPlugin<P,W> - Class in org.scijava.ui

AbstractInputHarvesterPlugin is an InputHarvester that implements the PreprocessorPlugin interface.

AbstractInputHarvesterPlugin() - Constructor for class org.scijava.ui.AbstractInputHarvesterPlugin

 

AbstractInputPanel<P,W> - Class in org.scijava.widget

Abstract superclass of UI-specific InputPanel implementations.

AbstractInputPanel() - Constructor for class org.scijava.widget.AbstractInputPanel

 

AbstractInputWidget<T,W> - Class in org.scijava.widget

Base class for input widgets.

AbstractInputWidget() - Constructor for class org.scijava.widget.AbstractInputWidget

 

AbstractIOPlugin<D> - Class in org.scijava.io

Abstract base class for IOPlugins.

AbstractIOPlugin() - Constructor for class org.scijava.io.AbstractIOPlugin

 

AbstractLevelsFilter - Class in org.scijava.config.logback

Filters log messages, keeping only certain levels.

AbstractLevelsFilter(Level...) - Constructor for class org.scijava.config.logback.AbstractLevelsFilter

 

AbstractLocation - Class in org.scijava.io.location

Abstract base class for Location implementations.

AbstractLocation() - Constructor for class org.scijava.io.location.AbstractLocation

 

AbstractLocationResolver - Class in org.scijava.io.location

Abstract super class for LocationResolver plugins.

AbstractLocationResolver(String...) - Constructor for class org.scijava.io.location.AbstractLocationResolver

 

AbstractLogService - Class in org.scijava.log

Base class for LogService implementations.

AbstractLogService() - Constructor for class org.scijava.log.AbstractLogService

 

AbstractLogService(Properties) - Constructor for class org.scijava.log.AbstractLogService

 

AbstractMenuCreator<T,M> - Class in org.scijava.menu

Abstract helper class for generating a menu structure.

AbstractMenuCreator() - Constructor for class org.scijava.menu.AbstractMenuCreator

 

AbstractModule - Class in org.scijava.module

Abstract superclass of Module implementations.

AbstractModule() - Constructor for class org.scijava.module.AbstractModule

 

AbstractModuleInfo - Class in org.scijava.module

Abstract superclass of ModuleInfo implementation.

AbstractModuleInfo() - Constructor for class org.scijava.module.AbstractModuleInfo

 

AbstractModuleItem<T> - Class in org.scijava.module

Abstract superclass of ModuleItem implementations.

AbstractModuleItem(ModuleInfo) - Constructor for class org.scijava.module.AbstractModuleItem

 

AbstractMouseAndKeyHandler - Class in org.scijava.ui.behaviour

 

AbstractMouseAndKeyHandler() - Constructor for class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler

 

AbstractMouseAndKeyHandler.BehaviourEntry<T extends Behaviour> - Class in org.scijava.ui.behaviour

 

AbstractNamedAction - Class in org.scijava.ui.behaviour.util

 

AbstractNamedAction(String) - Constructor for class org.scijava.ui.behaviour.util.AbstractNamedAction

 

AbstractNamedBehaviour - Class in org.scijava.ui.behaviour.util

 

AbstractNamedBehaviour(String) - Constructor for class org.scijava.ui.behaviour.util.AbstractNamedBehaviour

 

AbstractOptions<T extends AbstractOptions<T>> - Class in org.scijava.optional

 

AbstractOptions(T) - Constructor for class org.scijava.optional.AbstractOptions

 

AbstractOptions() - Constructor for class org.scijava.optional.AbstractOptions

 

AbstractOptions.AbstractValues - Class in org.scijava.optional

 

AbstractOptions.ValuesToString - Class in org.scijava.optional

 

AbstractPlatform - Class in org.scijava.platform

Abstract superclass of platform implementations.

AbstractPlatform() - Constructor for class org.scijava.platform.AbstractPlatform

 

AbstractPOMHandler - Class in org.scijava.minimaven

Abstract base class for POM SAX handlers.

AbstractPOMHandler() - Constructor for class org.scijava.minimaven.AbstractPOMHandler

 

AbstractPostprocessorPlugin - Class in org.scijava.module.process

Abstract base class for plugin postprocessors.

AbstractPostprocessorPlugin() - Constructor for class org.scijava.module.process.AbstractPostprocessorPlugin

 

AbstractPrefService - Class in org.scijava.prefs

Abstract PrefService implementation.

AbstractPrefService() - Constructor for class org.scijava.prefs.AbstractPrefService

 

AbstractPreprocessorPlugin - Class in org.scijava.module.process

Abstract base class for plugin preprocessors.

AbstractPreprocessorPlugin() - Constructor for class org.scijava.module.process.AbstractPreprocessorPlugin

 

AbstractPrimitiveArray<ArrayType,BaseType> - Class in org.scijava.util

Abstract base class for primitive-type extensible arrays.

AbstractPrimitiveArray(Class<BaseType>) - Constructor for class org.scijava.util.AbstractPrimitiveArray

Constructs an extensible array of primitive type elements, backed by a fixed-size array.

AbstractPrimitiveArray(Class<BaseType>, int) - Constructor for class org.scijava.util.AbstractPrimitiveArray

Constructs an extensible array of primitive type elements, backed by a fixed-size array.

AbstractPrimitiveArray(Class<BaseType>, ArrayType) - Constructor for class org.scijava.util.AbstractPrimitiveArray

Constructs an extensible array of primitive type elements, backed by the given fixed-size array.

AbstractPTService<PT extends SciJavaPlugin> - Class in org.scijava.plugin

Abstract base class for PTServices.

AbstractPTService() - Constructor for class org.scijava.plugin.AbstractPTService

 

AbstractRemoteLocation - Class in org.scijava.io.location

Abstract base class for RemoteLocation implementations.

AbstractRemoteLocation() - Constructor for class org.scijava.io.location.AbstractRemoteLocation

 

AbstractRichPlugin - Class in org.scijava.plugin

Abstract base class for RichPlugin implementations.

AbstractRichPlugin() - Constructor for class org.scijava.plugin.AbstractRichPlugin

 

AbstractScriptContext - Class in org.scijava.script

A minimal implementation of ScriptContext for use in the AbstractScriptEngine.

AbstractScriptContext() - Constructor for class org.scijava.script.AbstractScriptContext

 

AbstractScriptEngine - Class in org.scijava.script

This class implements dummy versions for ScriptEngine's methods that are not needed by the SciJava scripting framework.

AbstractScriptEngine() - Constructor for class org.scijava.script.AbstractScriptEngine

 

AbstractScriptHeader - Class in org.scijava.script

Abstract superclass for ScriptHeader implementations.

AbstractScriptHeader() - Constructor for class org.scijava.script.AbstractScriptHeader

 

AbstractScriptLanguage - Class in org.scijava.script

Abstract superclass for ScriptLanguage implementations.

AbstractScriptLanguage() - Constructor for class org.scijava.script.AbstractScriptLanguage

 

AbstractSeekableStreamHandle<L extends Location> - Class in org.scijava.io.handle

 

AbstractSeekableStreamHandle() - Constructor for class org.scijava.io.handle.AbstractSeekableStreamHandle

 

AbstractService - Class in org.scijava.service

Abstract superclass of Service implementations.

AbstractService() - Constructor for class org.scijava.service.AbstractService

 

AbstractSingleInputPreprocessor - Class in org.scijava.module.process

Abstract superclass for PreprocessorPlugin implementations that populate singleton inputs.

AbstractSingleInputPreprocessor() - Constructor for class org.scijava.module.process.AbstractSingleInputPreprocessor

 

AbstractSingletonService<PT extends SingletonPlugin> - Class in org.scijava.plugin

Abstract base class for SingletonServices.

AbstractSingletonService() - Constructor for class org.scijava.plugin.AbstractSingletonService

 

AbstractStackEvaluator - Class in org.scijava.parsington.eval

Base class for StackEvaluator implementations.

AbstractStackEvaluator() - Constructor for class org.scijava.parsington.eval.AbstractStackEvaluator

 

AbstractStackEvaluator(ExpressionParser) - Constructor for class org.scijava.parsington.eval.AbstractStackEvaluator

 

AbstractStandardStackEvaluator - Class in org.scijava.parsington.eval

Base class for stack-based evaluators which support the standard operators.

AbstractStandardStackEvaluator() - Constructor for class org.scijava.parsington.eval.AbstractStandardStackEvaluator

 

AbstractStandardStackEvaluator(ExpressionParser) - Constructor for class org.scijava.parsington.eval.AbstractStandardStackEvaluator

 

AbstractStreamHandle<L extends Location> - Class in org.scijava.io.handle

Abstract base class for StreamHandle implementations.

AbstractStreamHandle() - Constructor for class org.scijava.io.handle.AbstractStreamHandle

 

AbstractSwingMenuCreator<T> - Class in org.scijava.ui.swing.menu

Populates a Swing menu structure with menu items from a ShadowMenu.

AbstractSwingMenuCreator() - Constructor for class org.scijava.ui.swing.menu.AbstractSwingMenuCreator

 

AbstractSwingUI - Class in org.scijava.ui.swing

Abstract superclass for Swing-based user interfaces.

AbstractSwingUI() - Constructor for class org.scijava.ui.swing.AbstractSwingUI

 

AbstractTable<C extends Column<? extends T>,T> - Class in org.scijava.table

Abstract superclass for column-oriented Table implementations.

AbstractTable() - Constructor for class org.scijava.table.AbstractTable

Creates an empty table.

AbstractTable(int, int) - Constructor for class org.scijava.table.AbstractTable

Creates a table with the given column and row dimensions.

AbstractTableDisplayViewer - Class in org.scijava.ui.viewer.table

Implements the UI-independent elements of a Table viewer.

AbstractTableDisplayViewer() - Constructor for class org.scijava.ui.viewer.table.AbstractTableDisplayViewer

 

AbstractTextDisplayViewer - Class in org.scijava.ui.viewer.text

Implements the UI-independent elements of a text viewer.

AbstractTextDisplayViewer() - Constructor for class org.scijava.ui.viewer.text.AbstractTextDisplayViewer

 

AbstractTextFormat - Class in org.scijava.text

Abstract superclass of TextFormat implementations.

AbstractTextFormat() - Constructor for class org.scijava.text.AbstractTextFormat

 

AbstractTool - Class in org.scijava.tool

Abstract base class for Tool implementations.

AbstractTool() - Constructor for class org.scijava.tool.AbstractTool

 

AbstractTypedIOService<D> - Class in org.scijava.io

Abstract base class for typed IOPlugins.

AbstractTypedIOService() - Constructor for class org.scijava.io.AbstractTypedIOService

 

AbstractTypedPlugin<D> - Class in org.scijava.plugin

Abstract base class for TypedPlugins.

AbstractTypedPlugin() - Constructor for class org.scijava.plugin.AbstractTypedPlugin

 

AbstractTypedService<DT,PT extends TypedPlugin<DT>> - Class in org.scijava.plugin

Abstract base class for TypedServices.

AbstractTypedService() - Constructor for class org.scijava.plugin.AbstractTypedService

 

AbstractUIDetails - Class in org.scijava

Abstract superclass of UIDetails implementations.

AbstractUIDetails() - Constructor for class org.scijava.AbstractUIDetails

 

AbstractUIInputWidget<T,W> - Class in org.scijava.ui

Abstract superclass of InputWidget implementations that belong to a specific UI.

AbstractUIInputWidget() - Constructor for class org.scijava.ui.AbstractUIInputWidget

 

AbstractUserInterface - Class in org.scijava.ui

Abstract superclass for UserInterface implementations.

AbstractUserInterface() - Constructor for class org.scijava.ui.AbstractUserInterface

 

AbstractValues() - Constructor for class org.scijava.optional.AbstractOptions.AbstractValues

 

AbstractWrapperPlugin<D> - Class in org.scijava.plugin

Abstract base class for WrapperPlugins.

AbstractWrapperPlugin() - Constructor for class org.scijava.plugin.AbstractWrapperPlugin

 

AbstractWrapperService<DT,PT extends WrapperPlugin<DT>> - Class in org.scijava.plugin

Abstract base class for WrapperServices.

AbstractWrapperService() - Constructor for class org.scijava.plugin.AbstractWrapperService

 

Accelerator - Class in org.scijava.input

A keyboard shortcut, consisting of a KeyCode plus InputModifiers.

Accelerator(KeyCode, InputModifiers) - Constructor for class org.scijava.input.Accelerator

 

AcceleratorTriplet() - Constructor for class org.scijava.ui.swing.script.TextEditor.AcceleratorTriplet

 

accept(String, Object) - Method in class org.scijava.optional.AbstractOptions.ValuesToString

 

acquireDrawer(Tool) - Method in interface org.scijava.tool.IconService

 

acquireDrawer(Tool) - Method in class org.scijava.ui.swing.SwingIconService

 

actionPerformed(ActionEvent) - Method in class org.scijava.batch.SwingScriptInfoWidget

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.awt.widget.AWTFileWidget

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.behaviour.util.RunnableAction

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.script.BookmarkDialog

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.script.FindAndReplaceDialog

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.script.TextEditor

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingChoiceRadioWidget

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingChoiceWidget

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingColorWidget

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingDateWidget

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingFileListWidget

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingFileWidget

 

actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingObjectWidget

 

actions(SearchResult) - Method in interface org.scijava.search.SearchService

Gets the suite of available actions for the given search result.

Actions - Class in org.scijava.ui.behaviour.util

Convenience class for adding to a InputMap/ActionMap pair, with InputMap keys that are read from a given InputTriggerConfig.

Actions(KeyStrokeAdder.Factory, String...) - Constructor for class org.scijava.ui.behaviour.util.Actions

Construct with new, empty InputMap and ActionMap.

Actions(InputMap, ActionMap, KeyStrokeAdder.Factory, String...) - Constructor for class org.scijava.ui.behaviour.util.Actions

Construct with specified InputMap and ActionMap.

activate() - Method in interface org.scijava.tool.Tool

Informs the tool that it is now active.

activate() - Method in interface org.scijava.ui.ApplicationFrame

Activate the application frame, bringing it to the front.

activate() - Method in class org.scijava.ui.awt.AWTApplicationFrame

 

activate(KeyPressedManager.KeyPressedReceiver) - Method in class org.scijava.ui.behaviour.KeyPressedManager

 

activate() - Method in class org.scijava.ui.swing.search.SwingSearchBar

Called externally to bring the search bar into focus.

activate() - Method in class org.scijava.ui.swing.SwingApplicationFrame

 

ACTIVE_BORDER - Static variable in class org.scijava.ui.swing.SwingToolBar

 

ActiveDisplayPreprocessor - Class in org.scijava.display

Assigns the active Display when there is one single unresolved Display parameter.

ActiveDisplayPreprocessor() - Constructor for class org.scijava.display.ActiveDisplayPreprocessor

 

adapt(Object) - Method in class org.scijava.annotations.AbstractIndexWriter

 

adapt(A) - Method in class org.scijava.annotations.AbstractIndexWriter

 

AdaptedScriptEngine - Class in org.scijava.script

Abstract superclass for ScriptEngine implementations which adapt an existing ScriptEngine.

AdaptedScriptEngine(ScriptEngine) - Constructor for class org.scijava.script.AdaptedScriptEngine

 

AdaptedScriptLanguage - Class in org.scijava.script

Abstract superclass for ScriptLanguage implementations which adapt an existing ScriptEngineFactory.

AdaptedScriptLanguage(ScriptEngineFactory) - Constructor for class org.scijava.script.AdaptedScriptLanguage

Creates a new AdaptedScriptLanguage wrapping the given ScriptEngineFactory.

AdaptedScriptLanguage(String) - Constructor for class org.scijava.script.AdaptedScriptLanguage

Creates a new AdaptedScriptLanguage wrapping the ScriptEngineFactory with the given name.

add(Map<String, Object>, String, String) - Method in class org.scijava.annotations.AbstractIndexWriter

 

add(A, String) - Method in class org.scijava.annotations.DirectoryIndexer

 

add(int, T) - Method in class org.scijava.display.AbstractDisplay

 

add(T) - Method in class org.scijava.display.AbstractDisplay

 

add(String) - Method in class org.scijava.io.DefaultRecentFileService

 

add(String) - Method in interface org.scijava.io.RecentFileService

Adds or refreshes a path on the list of recent files.

add(ModuleInfo) - Method in class org.scijava.menu.ShadowMenu

Adds the given module to the menu structure.

add(String) - Method in class org.scijava.minimaven.JarClassLoader

 

add(E, String) - Method in class org.scijava.object.NamedObjectIndex

 

add(E, Class<?>, String, boolean) - Method in class org.scijava.object.NamedObjectIndex

 

add(E) - Method in class org.scijava.object.ObjectIndex

 

add(E, boolean) - Method in class org.scijava.object.ObjectIndex

Adds the object to all compatible type lists.

add(E, Class<?>, boolean) - Method in class org.scijava.object.ObjectIndex

Adds an object to type lists beneath the given type hierarchy.

add(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

add(String, String) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

add(int, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

add(long, long) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

add(float, float) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

add(double, double) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

add(BigInteger, BigInteger) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

add(BigDecimal, BigDecimal) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

add(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator

Applies the Operators.ADD operator.

ADD - Static variable in class org.scijava.parsington.Operators

 

add(ScriptEngineFactory, boolean) - Method in class org.scijava.script.ScriptLanguageIndex

 

add(ScriptLanguage) - Method in class org.scijava.script.ScriptLanguageIndex

 

add(C) - Method in class org.scijava.table.AbstractTable

 

add(int, C) - Method in class org.scijava.table.AbstractTable

 

add(C) - Method in interface org.scijava.table.Table

Appends the specified column to the end of the table.

add(int, C) - Method in interface org.scijava.table.Table

Inserts the specified column at the specified position in the table.

add(String, String, String) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig

 

add(InputTrigger, String, String) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig

 

add(InputTrigger, String, Collection<String>) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig

 

add(String) - Method in class org.scijava.ui.swing.script.RecentFilesMenuItem

 

add(int, BaseType) - Method in class org.scijava.util.AbstractPrimitiveArray

 

add(int, Boolean) - Method in class org.scijava.util.BoolArray

 

add(int, Byte) - Method in class org.scijava.util.ByteArray

 

add(int, Character) - Method in class org.scijava.util.CharArray

 

add(int, Double) - Method in class org.scijava.util.DoubleArray

 

add(int, Float) - Method in class org.scijava.util.FloatArray

 

add(int, Integer) - Method in class org.scijava.util.IntArray

 

add(T) - Method in class org.scijava.util.LastRecentlyUsed

Add a new newest entry.

add(int, Long) - Method in class org.scijava.util.LongArray

 

add(int, E) - Method in class org.scijava.util.ObjectArray

 

add(int, Short) - Method in class org.scijava.util.ShortArray

 

ADD_ASSIGN - Static variable in class org.scijava.parsington.Operators

 

addAccelerator(JMenuItem, int, int) - Method in class org.scijava.ui.swing.script.TextEditor

 

addAccelerator(JMenuItem, int, int, boolean) - Method in class org.scijava.ui.swing.script.TextEditor

 

addAccelerator(RSyntaxTextArea, JMenuItem, int, int) - Method in class org.scijava.ui.swing.script.TextEditor

 

addActionMap(String, ActionMap) - Method in class org.scijava.ui.behaviour.util.InputActionBindings

Add as ActionMap with the specified id to the end of the list (overrides maps that were added earlier).

addActionMap(int, String, ActionMap) - Method in class org.scijava.ui.behaviour.util.InputActionBindings

Add as ActionMap with the specified id at the specified position in the list (overrides maps at lower positions).

addAlias(String, Class<?>) - Method in class org.scijava.script.DefaultScriptService

 

addAlias(Class<?>) - Method in interface org.scijava.script.ScriptService

TODO

addAlias(String, Class<?>) - Method in interface org.scijava.script.ScriptService

TODO

addAll(int, Collection<? extends T>) - Method in class org.scijava.display.AbstractDisplay

 

addAll(Collection<? extends T>) - Method in class org.scijava.display.AbstractDisplay

 

addAll(Collection<? extends ModuleInfo>) - Method in class org.scijava.menu.ShadowMenu

Adds the given modules to the menu structure.

addAll(Collection<? extends E>) - Method in class org.scijava.object.ObjectIndex

 

addAll(Collection<? extends E>) - Method in class org.scijava.object.SortedObjectIndex

 

addAll(Collection<? extends C>) - Method in class org.scijava.table.AbstractTable

 

addAll(int, Collection<? extends C>) - Method in class org.scijava.table.AbstractTable

 

addAll(Collection<? extends C>) - Method in interface org.scijava.table.Table

Appends all of the columns in the specified collection to the end of the table, in the order that they are returned by the specified collection's iterator.

addAll(int, Collection<? extends C>) - Method in interface org.scijava.table.Table

Inserts all of the columns in the specified collection into this list at the specified position.

addAll(int, Collection<? extends Boolean>) - Method in class org.scijava.util.BoolArray

 

addAll(int, Collection<? extends Byte>) - Method in class org.scijava.util.ByteArray

 

addAll(int, Collection<? extends Character>) - Method in class org.scijava.util.CharArray

 

addAll(int, Collection<? extends Double>) - Method in class org.scijava.util.DoubleArray

 

addAll(int, Collection<? extends Float>) - Method in class org.scijava.util.FloatArray

 

addAll(int, Collection<? extends Integer>) - Method in class org.scijava.util.IntArray

 

addAll(Collection<? extends T>) - Method in class org.scijava.util.LastRecentlyUsed

 

addAll(int, Collection<? extends Long>) - Method in class org.scijava.util.LongArray

 

addAll(int, Collection<? extends E>) - Method in class org.scijava.util.ObjectArray

 

addAll(int, Collection<? extends Short>) - Method in class org.scijava.util.ShortArray

 

addArgDelimiter() - Method in interface org.scijava.script.CodeGenerator

Deprecated.

Adds delimiter character between arguments (typically a ',').

addArgDelimiter() - Method in class org.scijava.script.CodeGeneratorJava

Deprecated.

 

addArgument(ParameterObject) - Method in interface org.scijava.script.CodeGenerator

Deprecated.

 

addArgument(ParameterObject) - Method in class org.scijava.script.CodeGeneratorJava

Deprecated.

 

addAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator

 

addAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator

Applies the Operators.ADD_ASSIGN operator.

addAutoCompletionListener(AutoCompletionListener) - Static method in class org.scijava.ui.swing.script.autocompletion.JythonAutocompletionProvider

 

addBehaviourMap(String, BehaviourMap) - Method in class org.scijava.ui.behaviour.util.TriggerBehaviourBindings

Add as BehaviourMap with the specified id to the end of the list (overrides maps that were added earlier).

addButton(String, String, ActionListener) - Method in class org.scijava.ui.swing.search.SwingSearchBar

Adds a button to the search pane's toolbar.

addChild(MavenProject) - Method in class org.scijava.minimaven.MavenProject

 

addChildren(List<? extends TreeNode<?>>) - Method in interface org.scijava.util.TreeNode

Adds the given list of children to this node.

addCommand(String, String, String) - Method in class org.scijava.ui.behaviour.io.gui.CommandDescriptionBuilder

 

addConfigChangeListener(VisualEditorPanel.ConfigChangeListener) - Method in class org.scijava.ui.behaviour.io.gui.VisualEditorPanel

Deprecated.

Use modelChangedListeners().add(listener) instead.

addDefaultAccelerators(RSyntaxTextArea) - Method in class org.scijava.ui.swing.script.TextEditor

 

addDisplayViewer(DisplayViewer<?>) - Method in class org.scijava.ui.DefaultUIService

 

addDisplayViewer(DisplayViewer<?>) - Method in interface org.scijava.ui.UIService

Registers the given viewer with the service.

addError(String, int, String) - Method in class org.scijava.ui.swing.script.ErrorHandler

 

addEventDispatcher(InternalFrameEventDispatcher) - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow

 

addEventDispatcher(AWTInputEventDispatcher) - Method in class org.scijava.ui.swing.SwingApplicationFrame

 

addEventDispatcher(AWTInputEventDispatcher) - Method in class org.scijava.ui.swing.SwingStatusBar

 

addHotKey(int, JComponent, String, Action) - Static method in class org.scijava.ui.swing.StaticSwingUtils

Adds a control hot key to the containing window of a component.

addImport(String) - Method in class org.scijava.ui.swing.script.TextEditor

 

addImport(String) - Method in class org.scijava.ui.swing.script.TokenFunctions

 

addInput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo

 

addInput(String, Class<T>) - Method in interface org.scijava.module.MutableModule

Adds an input to the list.

addInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule

Adds an input to the list.

addInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo

Adds an input to the list.

addInputMap(String, InputMap, String...) - Method in class org.scijava.ui.behaviour.util.InputActionBindings

Adds a InputMap with the specified id to the end of the list (overrides maps that were added earlier).

addInputMap(String, InputMap, Collection<String>) - Method in class org.scijava.ui.behaviour.util.InputActionBindings

Adds a InputMap with the specified id to the end of the list (overrides maps that were added earlier).

addInputMap(int, String, InputMap, String...) - Method in class org.scijava.ui.behaviour.util.InputActionBindings

Inserts a InputMap with the specified id at the specified position in the list (overrides maps at lower positions).

addInputMap(int, String, InputMap, Collection<String>) - Method in class org.scijava.ui.behaviour.util.InputActionBindings

Inserts a InputMap with the specified id at the specified position in the list (overrides maps at lower positions).

addInputTriggerChangeListener(InputTriggerPanelEditor.InputTriggerChangeListener) - Method in class org.scijava.ui.behaviour.io.gui.InputTriggerPanelEditor

 

addInputTriggerMap(String, InputTriggerMap, String...) - Method in class org.scijava.ui.behaviour.util.TriggerBehaviourBindings

Add as InputTriggerMap with the specified id to the end of the list (overrides maps that were added earlier).

addInputTriggerMap(String, InputTriggerMap, Collection<String>) - Method in class org.scijava.ui.behaviour.util.TriggerBehaviourBindings

Add as InputTriggerMap with the specified id to the end of the list (overrides maps that were added earlier).

addLater(LazyObjects<? extends E>) - Method in class org.scijava.object.ObjectIndex

Registers objects which will be created lazily as needed.

addLeafListener(FileSystemTree.LeafListener) - Method in class org.scijava.ui.swing.script.FileSystemTree

 

addLeafToMenu(ShadowMenu, M) - Method in class org.scijava.menu.AbstractMenuCreator

 

addLeafToMenu(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator

 

addLeafToMenu(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator

 

addLeafToTop(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator

 

addLeafToTop(ShadowMenu, MenuBar) - Method in class org.scijava.ui.awt.menu.AWTMenuBarCreator

 

addLeafToTop(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AWTMenuCreator

 

addLeafToTop(ShadowMenu, PopupMenu) - Method in class org.scijava.ui.awt.menu.AWTPopupMenuCreator

 

addLeafToTop(ShadowMenu, JMenuBar) - Method in class org.scijava.ui.swing.menu.SwingJMenuBarCreator

 

addLeafToTop(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.SwingJMenuCreator

 

addLeafToTop(ShadowMenu, JPopupMenu) - Method in class org.scijava.ui.swing.menu.SwingJPopupMenuCreator

 

addListener(EventHistoryListener) - Method in class org.scijava.event.DefaultEventHistory

 

addListener(EventHistoryListener) - Method in interface org.scijava.event.EventHistory

Adds an event history listener.

addLogListener(LogListener) - Method in class org.scijava.log.AbstractLogService

 

addLogListener(LogListener) - Method in class org.scijava.log.DefaultLogger

 

addLogListener(LogListener) - Method in interface org.scijava.log.Logger

Adds an item to the list of registered listeners.

addMain(String, String...) - Method in class org.scijava.main.DefaultMainService

 

addMain(String, String...) - Method in interface org.scijava.main.MainService

Registers a main class to be executed by MainService.execMains().

addMap(InputTriggerMap, String) - Method in class org.scijava.ui.behaviour.io.InputTriggerDescriptionsBuilder

 

addMap(InputMap, String) - Method in class org.scijava.ui.behaviour.io.InputTriggerDescriptionsBuilder

 

addModule(String) - Method in class org.scijava.minimaven.MavenProject

 

addModule(ModuleInfo) - Method in class org.scijava.module.DefaultModuleService

 

addModule(ModuleInfo) - Method in interface org.scijava.module.ModuleService

Manually registers a module with the module service.

addModuleCalled(String) - Method in interface org.scijava.script.CodeGenerator

Deprecated.

 

addModuleCalled(String) - Method in class org.scijava.script.CodeGeneratorJava

Deprecated.

 

addModules(Collection<? extends ModuleInfo>) - Method in class org.scijava.module.DefaultModuleService

 

addModules(Collection<? extends ModuleInfo>) - Method in interface org.scijava.module.ModuleService

Manually registers a list of modules with the module service.

addMultiProjectRoot(File) - Method in class org.scijava.minimaven.BuildEnvironment

 

addNonLeafToMenu(ShadowMenu, M) - Method in class org.scijava.menu.AbstractMenuCreator

 

addNonLeafToMenu(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator

 

addNonLeafToMenu(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator

 

addNonLeafToTop(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator

 

addNonLeafToTop(ShadowMenu, MenuBar) - Method in class org.scijava.ui.awt.menu.AWTMenuBarCreator

 

addNonLeafToTop(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AWTMenuCreator

 

addNonLeafToTop(ShadowMenu, PopupMenu) - Method in class org.scijava.ui.awt.menu.AWTPopupMenuCreator

 

addNonLeafToTop(ShadowMenu, JMenuBar) - Method in class org.scijava.ui.swing.menu.SwingJMenuBarCreator

 

addNonLeafToTop(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.SwingJMenuCreator

 

addNonLeafToTop(ShadowMenu, JPopupMenu) - Method in class org.scijava.ui.swing.menu.SwingJPopupMenuCreator

 

addObject(Object) - Method in interface org.scijava.object.ObjectService

Registers an object with the object service.

addObject(Object, String) - Method in interface org.scijava.object.ObjectService

Registers a named object with the object service.

addObservers(Runnable) - Method in class org.scijava.ui.swing.console.LogRecorder

The Runnable observer will be executed, after every new log message or text recorded.

addOperation(Runnable) - Method in class org.scijava.startup.DefaultStartupService

 

addOperation(Runnable) - Method in interface org.scijava.startup.StartupService

Adds an operation that will run as soon as the application starts up.

addOutput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo

 

addOutput(String, Class<T>) - Method in interface org.scijava.module.MutableModule

Adds an output to the list.

addOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule

Adds an output to the list.

addOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo

Adds an output to the list.

addOutputListener(OutputListener) - Method in interface org.scijava.console.ConsoleService

Adds a listener for output sent to stdout or stderr.

addOutputListener(OutputListener) - Method in class org.scijava.console.DefaultConsoleService

 

addOutputStream(OutputStream) - Method in class org.scijava.console.MultiOutputStream

Adds an output stream to those receiving this stream's output.

addParameter(String, Class<?>, Object) - Method in class org.scijava.script.InvocationObject

Deprecated.

 

addPlugin(PluginInfo<?>) - Method in class org.scijava.plugin.DefaultPluginService

 

addPlugin(PluginInfo<?>) - Method in interface org.scijava.plugin.PluginService

Manually registers a plugin with the plugin service.

addPlugins(Collection<T>) - Method in class org.scijava.plugin.DefaultPluginService

 

addPlugins(Collection<T>) - Method in interface org.scijava.plugin.PluginService

Manually registers plugins with the plugin service.

addPropertyChangeListener(PropertyChangeListener) - Method in interface org.scijava.ui.Arrangeable

 

addRecursively(List<String>, File, String, File, String, boolean) - Method in class org.scijava.minimaven.MavenProject

 

addResolver(Map<String, Object>) - Method in class org.scijava.grab.DefaultGrabService

 

addResolver(Map<String, Object>) - Method in interface org.scijava.grab.GrabService

 

addRootDirectory(String, boolean) - Method in class org.scijava.ui.swing.script.FileSystemTree

Add a directory as a top-level root.

addScriptDirectory(File) - Method in class org.scijava.script.DefaultScriptService

 

addScriptDirectory(File, MenuPath) - Method in class org.scijava.script.DefaultScriptService

 

addScriptDirectory(File) - Method in interface org.scijava.script.ScriptService

Adds a base directory to scan for scripts.

addScriptDirectory(File, MenuPath) - Method in interface org.scijava.script.ScriptService

Adds a base directory to scan for scripts, placing discovered scripts beneath the given menu path prefix.

addSeparatorToMenu(M) - Method in class org.scijava.menu.AbstractMenuCreator

 

addSeparatorToMenu(Menu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator

 

addSeparatorToMenu(JMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator

 

addSeparatorToTop(T) - Method in class org.scijava.menu.AbstractMenuCreator

 

addSeparatorToTop(MenuBar) - Method in class org.scijava.ui.awt.menu.AWTMenuBarCreator

 

addSeparatorToTop(Menu) - Method in class org.scijava.ui.awt.menu.AWTMenuCreator

 

addSeparatorToTop(PopupMenu) - Method in class org.scijava.ui.awt.menu.AWTPopupMenuCreator

 

addSeparatorToTop(JMenuBar) - Method in class org.scijava.ui.swing.menu.SwingJMenuBarCreator

 

addSeparatorToTop(JMenu) - Method in class org.scijava.ui.swing.menu.SwingJMenuCreator

 

addSeparatorToTop(JPopupMenu) - Method in class org.scijava.ui.swing.menu.SwingJPopupMenuCreator

 

addTag(String) - Method in class org.scijava.ui.behaviour.io.gui.TagPanelEditor

 

addTagSelectionChangeListener(TagPanelEditor.TagSelectionChangeListener) - Method in class org.scijava.ui.behaviour.io.gui.TagPanelEditor

 

addTemplatePath(String) - Static method in class org.scijava.ui.swing.script.TextEditor

Adds a script template path that will be scanned by future TextEditor instances.

addThread(Thread, TextEditor) - Static method in class org.scijava.ui.swing.script.ExceptionHandler

 

addThreadGroup(ThreadGroup, TextEditor) - Static method in class org.scijava.ui.swing.script.ExceptionHandler

 

addTiming(Object) - Method in class org.scijava.util.Timing

 

addTiming(long, Object) - Method in class org.scijava.util.Timing

 

addToEnd(T) - Method in class org.scijava.util.LastRecentlyUsed

Add a new oldest entry.

addToJarRecursively(JarOutputStream, File, String) - Method in class org.scijava.minimaven.MavenProject

 

addToken(char[], int, int, int, int, boolean) - Method in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker

Adds the token specified to the current linked list of tokens.

addToken(char[], int, int, int, int, boolean) - Method in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker

Adds the token specified to the current linked list of tokens.

addToList(E, List<E>, boolean) - Method in class org.scijava.object.ObjectIndex

 

addToList(E, List<E>, boolean) - Method in class org.scijava.object.SortedObjectIndex

 

addToMenu(JMenu, String, int, int) - Method in class org.scijava.ui.swing.script.TextEditor

 

addTopLevelFoldersFrom(String) - Method in class org.scijava.ui.swing.script.FileSystemTree

For restoring state.

addUI(UserInterface) - Method in class org.scijava.ui.DefaultUIService

 

addUI(String, UserInterface) - Method in class org.scijava.ui.DefaultUIService

 

addUI(UserInterface) - Method in interface org.scijava.ui.UIService

Adds the given UI to those managed by the service.

addUI(String, UserInterface) - Method in interface org.scijava.ui.UIService

Adds the given UI to those managed by the service.

addValue(boolean) - Method in class org.scijava.util.BoolArray

 

addValue(int, boolean) - Method in class org.scijava.util.BoolArray

 

addValue(byte) - Method in class org.scijava.util.ByteArray

 

addValue(int, byte) - Method in class org.scijava.util.ByteArray

 

addValue(char) - Method in class org.scijava.util.CharArray

 

addValue(int, char) - Method in class org.scijava.util.CharArray

 

addValue(double) - Method in class org.scijava.util.DoubleArray

 

addValue(int, double) - Method in class org.scijava.util.DoubleArray

 

addValue(float) - Method in class org.scijava.util.FloatArray

 

addValue(int, float) - Method in class org.scijava.util.FloatArray

 

addValue(int) - Method in class org.scijava.util.IntArray

 

addValue(int, int) - Method in class org.scijava.util.IntArray

 

addValue(long) - Method in class org.scijava.util.LongArray

 

addValue(int, long) - Method in class org.scijava.util.LongArray

 

addValue(E) - Method in class org.scijava.util.ObjectArray

 

addValue(int, E) - Method in class org.scijava.util.ObjectArray

 

addValue(short) - Method in class org.scijava.util.ShortArray

 

addValue(int, short) - Method in class org.scijava.util.ShortArray

 

addWidget(InputWidget<?, Panel>) - Method in class org.scijava.ui.awt.widget.AWTInputPanel

 

addWidget(InputWidget<?, JPanel>) - Method in class org.scijava.ui.swing.widget.SwingInputPanel

 

addWidget(InputWidget<?, W>) - Method in class org.scijava.widget.AbstractInputPanel

 

addWidget(InputWidget<?, W>) - Method in interface org.scijava.widget.InputPanel

Adds a widget to the panel.

adjustmentValueChanged(AdjustmentEvent) - Method in class org.scijava.ui.awt.widget.AWTNumberWidget

 

adjustmentValueChanged(AdjustmentEvent) - Method in class org.scijava.ui.swing.widget.SwingNumberWidget

 

advance(long) - Method in interface org.scijava.io.handle.StreamHandle

Increments the handle's offset by the given amount.

alias - Variable in class org.scijava.ui.swing.script.autocompletion.JythonAutoCompletion.Import

 

ALICEBLUE - Static variable in class org.scijava.util.Colors

 

allocate(FileChannel, FileChannel.MapMode, long, int) - Method in class org.scijava.io.nio.DefaultNIOService

 

allocate(FileChannel, FileChannel.MapMode, long, int) - Method in interface org.scijava.io.nio.NIOService

Allocates or maps the desired file data into memory.

allocate(long...) - Static method in class org.scijava.util.ArrayUtils

Allocates a 1-dimensional byte array matching the product of the given sizes.

ALT_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger

 

ALT_GRAPH_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger

 

ALTR_TMPDIR - Static variable in class org.scijava.nativelib.BaseJniExtractor

 

alwaysLog(int, Object, Throwable) - Method in class org.scijava.log.AbstractLogService

 

alwaysLog(int, Object, Throwable) - Method in class org.scijava.log.DefaultLogger

 

alwaysLog(int, Object, Throwable) - Method in interface org.scijava.log.Logger

Logs a message with an exception.

ANALYZE_LABEL - Static variable in class org.scijava.menu.MenuConstants

 

ANALYZE_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants

 

ANALYZE_WEIGHT - Static variable in class org.scijava.menu.MenuConstants

 

AND_ASSIGN - Static variable in class org.scijava.parsington.Operators

 

andAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator

 

andAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator

Applies the Operators.AND_ASSIGN operator.

annotation() - Method in class org.scijava.annotations.IndexItem

Obtains the annotation values.

AnnotationCombiner - Class in org.scijava.annotations

Combines annotation indexes from all JAR files on the classpath.

AnnotationCombiner() - Constructor for class org.scijava.annotations.AnnotationCombiner

 

AnnotationProcessor - Class in org.scijava.annotations

The annotation processor for use with Java 8 and earlier.

AnnotationProcessor() - Constructor for class org.scijava.annotations.AnnotationProcessor

 

ANTIQUEWHITE - Static variable in class org.scijava.util.Colors

 

app() - Method in class org.scijava.AbstractGateway

 

App - Interface in org.scijava.app

Metadata about a SciJava-based application, used by the AppService.

app() - Method in interface org.scijava.Gateway

Gets this application context's AppService.

AppAboutEvent - Class in org.scijava.platform.event

An event sent when the application is asked to open its about window.

AppAboutEvent() - Constructor for class org.scijava.platform.event.AppAboutEvent

 

append(String) - Method in class org.scijava.display.DefaultTextDisplay

 

append(String) - Method in interface org.scijava.display.TextDisplay

Add a line to the display.

append(StringBuilder, String) - Method in class org.scijava.minimaven.MavenProject

 

append(T) - Method in class org.scijava.optional.AbstractOptions

 

append(OutputEvent) - Method in interface org.scijava.ui.console.ConsolePane

Appends the given output to the console.

append(EventDetails) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame

Appends the given event details to the text pane.

append(String) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame

Appends the given HTML text string to the text pane.

append(OutputEvent) - Method in class org.scijava.ui.swing.console.SwingConsolePane

 

append(String[], String) - Method in class org.scijava.ui.swing.script.FileFunctions

 

append(String[], String[]) - Method in class org.scijava.ui.swing.script.FileFunctions

 

append(String) - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel

 

append(String) - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel

 

append(String) - Method in class org.scijava.util.StringMaker

 

append(String, Object) - Method in class org.scijava.util.StringMaker

 

append(String, Object, Object) - Method in class org.scijava.util.StringMaker

 

appendBytes(byte[], int) - Method in interface org.scijava.io.ByteBank

Appends the given bytes to the buffer

appendBytes(byte[], int, int) - Method in interface org.scijava.io.ByteBank

Appends the given bytes to the buffer

appendColumn() - Method in interface org.scijava.table.Table

Appends a column (with no header) to the table.

appendColumn(String) - Method in interface org.scijava.table.Table

Appends a column with the given header to the table.

appendColumns(int) - Method in interface org.scijava.table.Table

Appends a number of columns (with no headers) to the table.

appendColumns(String...) - Method in interface org.scijava.table.Table

Appends a block of columns with the given headers to the table.

appendContents(Collection<URL>, URL) - Static method in class org.scijava.util.FileUtils

Recursively adds contents from the referenced directory to an existing collection.

appendContents(Collection<URL>, URL, boolean, boolean) - Static method in class org.scijava.util.FileUtils

Add contents from the referenced directory to an existing collection.

appendRow() - Method in interface org.scijava.table.Table

Appends a row (with no header) to the table.

appendRow(String) - Method in interface org.scijava.table.Table

Appends a row with the given header to the table.

appendRows(int) - Method in interface org.scijava.table.Table

Appends a block of rows (with no headers) to the table.

appendRows(String...) - Method in interface org.scijava.table.Table

Appends a block of rows with the given headers to the table.

appEvent() - Method in class org.scijava.AbstractGateway

 

appEvent() - Method in interface org.scijava.Gateway

Gets this application context's AppEventService.

AppEventService - Interface in org.scijava.platform

Deprecated.

Use AppService and App instead.

AppFocusEvent - Class in org.scijava.platform.event

An event sent when the application has become the foreground app, or when it has resigned being the foreground app.

AppFocusEvent(boolean) - Constructor for class org.scijava.platform.event.AppFocusEvent

 

appHidden(AppHiddenEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher

 

APPLICATION_MENU_ROOT - Static variable in annotation type org.scijava.plugin.Plugin

Deprecated.

Use UIDetails.APPLICATION_MENU_ROOT instead.

APPLICATION_MENU_ROOT - Static variable in interface org.scijava.UIDetails

The default, application-level menu root.

ApplicationEvent - Class in org.scijava.platform.event

An event indicating an application-level occurrence.

ApplicationEvent() - Constructor for class org.scijava.platform.event.ApplicationEvent

 

ApplicationFrame - Interface in org.scijava.ui

Common interface for top-level application frames.

applySettings() - Method in class org.scijava.ui.swing.console.LogFormatter

 

AppMenusCreatedEvent - Class in org.scijava.platform.event

An event sent when the application has created and populated its menus.

AppMenusCreatedEvent(Object) - Constructor for class org.scijava.platform.event.AppMenusCreatedEvent

 

appMovedToBackground(AppForegroundEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher

 

AppOpenFilesEvent - Class in org.scijava.platform.event

An event sent when the application is asked to re-open itself.

AppOpenFilesEvent(List<File>) - Constructor for class org.scijava.platform.event.AppOpenFilesEvent

 

AppPreferencesEvent - Class in org.scijava.platform.event

An event sent when the application is asked to open its preferences window.

AppPreferencesEvent() - Constructor for class org.scijava.platform.event.AppPreferencesEvent

 

AppPrintEvent - Class in org.scijava.platform.event

An event sent when the app is asked to print a list of files.

AppPrintEvent() - Constructor for class org.scijava.platform.event.AppPrintEvent

 

AppQuitEvent - Class in org.scijava.platform.event

An event sent when the application is asked to quit.

AppQuitEvent() - Constructor for class org.scijava.platform.event.AppQuitEvent

 

appRaisedToForeground(AppForegroundEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher

 

appReOpened(AppReOpenedEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher

 

AppReOpenEvent - Class in org.scijava.platform.event

An event sent when the application is asked to re-open itself.

AppReOpenEvent() - Constructor for class org.scijava.platform.event.AppReOpenEvent

 

AppScreenSleepEvent - Class in org.scijava.platform.event

An event sent when the displays attached to the system enter and exit power save sleep.

AppScreenSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppScreenSleepEvent

 

AppService - Interface in org.scijava.app

Interface for application-level functionality.

AppSleepEvent - Class in org.scijava.platform.event

An event sent when a device enters or exits power save sleep.

AppSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppSleepEvent

 

AppSystemSleepEvent - Class in org.scijava.platform.event

An event sent when the system enters and exits power save sleep.

AppSystemSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppSystemSleepEvent

 

appUnhidden(AppHiddenEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher

 

AppUserSessionEvent - Class in org.scijava.platform.event

An event sent when the the user session has been changed via Fast User Switching.

AppUserSessionEvent(boolean) - Constructor for class org.scijava.platform.event.AppUserSessionEvent

 

AppUtils - Class in org.scijava.util

Useful methods for obtaining details of the SciJava application environment.

AppVisibleEvent - Class in org.scijava.platform.event

An event sent when the application has been hidden or shown.

AppVisibleEvent(boolean) - Constructor for class org.scijava.platform.event.AppVisibleEvent

 

AQUA - Static variable in class org.scijava.util.Colors

 

AQUAMARINE - Static variable in class org.scijava.util.Colors

 

AREA_STYLE - Static variable in interface org.scijava.widget.TextWidget

Widget style for text areas.

ARGBPlane - Class in org.scijava.ui

Represents a plane of ARGB pixel data.

ARGBPlane(int, int, int[]) - Constructor for class org.scijava.ui.ARGBPlane

 

ARGBPlane(int, int) - Constructor for class org.scijava.ui.ARGBPlane

 

args() - Method in interface org.scijava.main.MainService.Main

Gets the arguments to pass to the class's main method.

args(Type, Class<?>) - Static method in class org.scijava.util.Types

Gets the type arguments of a class/interface based on a subtype.

args(Class<?>, ParameterizedType) - Static method in class org.scijava.util.Types

Tries to determine the type arguments of a class/interface based on a super parameterized type's type arguments.

Arrangeable - Interface in org.scijava.ui

Arrangeable.

Arrangeable.Arrangement - Enum in org.scijava.ui

 

arrangeFramesHorizontally() - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane

Arranges the frames as efficiently as possibly with preference for keeping horizontal size maximal.

arrangeFramesVertically() - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane

Arranges the frames as efficiently as possibly with preference for keeping vertical size maximal.

array(T...) - Static method in class org.scijava.util.ArrayUtils

Creates an array of the given type, containing the specified values.

array(Class<?>) - Static method in class org.scijava.util.Types

Gets the array class corresponding to the given element type.

array(Class<?>, int) - Static method in class org.scijava.util.Types

Gets the array class corresponding to the given element type and dimensionality.

array(Type) - Static method in class org.scijava.util.Types

Gets the array type—which might be a Class or a GenericArrayType depending on the argument—corresponding to the given element type.

arrayContainsString(String[], String) - Method in class org.scijava.minimaven.MavenProject

 

ArrayConverters - Class in org.scijava.convert

Container class for all desired combinations of PrimitiveArrayUnwrapper and PrimitiveArrayWrapper implementations.

ArrayConverters() - Constructor for class org.scijava.convert.ArrayConverters

 

ArrayConverters.BoolArrayUnwrapper - Class in org.scijava.convert

 

ArrayConverters.BoolArrayWrapper - Class in org.scijava.convert

 

ArrayConverters.ByteArrayUnwrapper - Class in org.scijava.convert

 

ArrayConverters.ByteArrayWrapper - Class in org.scijava.convert

 

ArrayConverters.CharArrayUnwrapper - Class in org.scijava.convert

 

ArrayConverters.CharArrayWrapper - Class in org.scijava.convert

 

ArrayConverters.DoubleArrayUnwrapper - Class in org.scijava.convert

 

ArrayConverters.DoubleArrayWrapper - Class in org.scijava.convert

 

ArrayConverters.FloatArrayUnwrapper - Class in org.scijava.convert

 

ArrayConverters.FloatArrayWrapper - Class in org.scijava.convert

 

ArrayConverters.IntArrayUnwrapper - Class in org.scijava.convert

 

ArrayConverters.IntArrayWrapper - Class in org.scijava.convert

 

ArrayConverters.LongArrayUnwrapper - Class in org.scijava.convert

 

ArrayConverters.LongArrayWrapper - Class in org.scijava.convert

 

ArrayConverters.ShortArrayUnwrapper - Class in org.scijava.convert

 

ArrayConverters.ShortArrayWrapper - Class in org.scijava.convert

 

ArrayUtils - Class in org.scijava.util

Utility class for working with arrays, particularly arrays of primitives.

artifactId - Variable in class org.scijava.minimaven.Coordinate

 

as(Object, Class<T>) - Method in class org.scijava.script.process.DirectiveScriptProcessor

Coerces some object into another object of the given type.

asBigDecimal(Number) - Static method in class org.scijava.util.NumberUtils

 

asBigInteger(Number) - Static method in class org.scijava.util.NumberUtils

 

asHTML(String) - Method in class org.scijava.plugins.text.markdown.MarkdownTextFormat

 

asHTML(String) - Method in class org.scijava.plugins.text.plain.PlainTextFormat

 

asHTML(File) - Method in class org.scijava.text.DefaultTextService

 

asHTML(String) - Method in interface org.scijava.text.TextFormat

Expresses the given text string in HTML format.

asHTML(File) - Method in interface org.scijava.text.TextService

Expresses the given text string as HTML.

asList(Object, Class<T>) - Method in class org.scijava.script.process.DirectiveScriptProcessor

Coerces some object into a list of objects of the given type.

asMap() - Method in interface org.scijava.parse.Items

Gets the parsed items as a map.

assertConsistency() - Method in class org.scijava.util.LastRecentlyUsed

 

assertThat(boolean, String) - Method in class org.scijava.parsington.Position

Throws IllegalStateException if something goes wrong.

assign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator

 

assign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator

Applies the Operators.ASSIGN operator.

ASSIGN - Static variable in class org.scijava.parsington.Operators

 

assignProperties(MenuEntry) - Method in class org.scijava.MenuEntry

Updates any default properties of this menu entry to match those of the given menu entry.

asType(ModuleItem<?>, Class<T>) - Method in class org.scijava.command.InteractiveCommand

 

attach(Object) - Method in class org.scijava.log.LogMessage

Attach object to this log message.

attachments() - Method in class org.scijava.log.LogMessage

Collection of objects that have been attached to this message with LogMessage.attach(Object).

Attr - Annotation Type in org.scijava.plugin

A name/value attribute pair, used to extend the @Plugin annotation.

AUTO_DOWNLOAD_SETTING - Static variable in class org.scijava.grab.DefaultGrabService

 

AUTO_IMPORT_PREFS - Static variable in class org.scijava.ui.swing.script.TextEditor

 

autocomplete(String, int, ScriptEngine) - Method in class org.scijava.script.AbstractAutoCompleter

 

autocomplete(String, ScriptEngine) - Method in interface org.scijava.script.AutoCompleter

 

autocomplete(String, int, ScriptEngine) - Method in interface org.scijava.script.AutoCompleter

 

AutoCompleter - Interface in org.scijava.script

Helper for generating autocomplete suggestions for code fragments.

AutoCompletionListener - Interface in org.scijava.ui.swing.script.autocompletion

 

AutoCompletionResult - Class in org.scijava.script

Data structure housing suggestions given by AutoCompleter helpers.

AutoCompletionResult(List<String>) - Constructor for class org.scijava.script.AutoCompletionResult

 

AutoCompletionResult(List<String>, int) - Constructor for class org.scijava.script.AutoCompletionResult

 

AutoImporter - Interface in org.scijava.ui.swing.script

Base interface for auto-importer plugins.

available(long) - Method in interface org.scijava.io.handle.DataHandle

Gets the number of bytes which can be read from, or written to, the data handle, bounded by the specified number of bytes.

available() - Method in class org.scijava.io.handle.DataHandleInputStream

 

AWTApplicationFrame - Class in org.scijava.ui.awt

AWT implementation of ApplicationFrame.

AWTApplicationFrame(String) - Constructor for class org.scijava.ui.awt.AWTApplicationFrame

 

AWTButtonWidget - Class in org.scijava.ui.awt.widget

An AWT widget that displays a button and invokes the callback of a parameter when the button is clicked.

AWTButtonWidget() - Constructor for class org.scijava.ui.awt.widget.AWTButtonWidget

 

AWTChoiceWidget - Class in org.scijava.ui.awt.widget

AWT implementation of multiple choice selector widget.

AWTChoiceWidget() - Constructor for class org.scijava.ui.awt.widget.AWTChoiceWidget

 

AWTClipboard - Class in org.scijava.ui.awt

AWT implementation of the SystemClipboard interface

AWTClipboard() - Constructor for class org.scijava.ui.awt.AWTClipboard

 

AWTColors - Class in org.scijava.ui.awt

Translates ImageJ ColorRGBs into AWT Colors.

AWTCursors - Class in org.scijava.ui.awt

Translates ImageJ MouseCursors into AWT Cursors.

AWTDragAndDropData - Class in org.scijava.ui.awt

AWT implementation of DragAndDropData.

AWTDragAndDropData(Context, Transferable) - Constructor for class org.scijava.ui.awt.AWTDragAndDropData

 

AWTDropTargetEventDispatcher - Class in org.scijava.ui.awt

Rebroadcasts AWT DropTargetEvents as ImageJ DragAndDropEvent s.

AWTDropTargetEventDispatcher(Display<?>, EventService) - Constructor for class org.scijava.ui.awt.AWTDropTargetEventDispatcher

Creates an AWT drag-and-drop event dispatcher for the given display.

AWTFileWidget - Class in org.scijava.ui.awt.widget

AWT implementation of file selector widget.

AWTFileWidget() - Constructor for class org.scijava.ui.awt.widget.AWTFileWidget

 

AWTImageTools - Class in org.scijava.ui.awt

Convenience methods for working with AWT Images.

AWTInputEventDispatcher - Class in org.scijava.ui.awt

Rebroadcasts AWT InputEvents as ImageJ InputEvents, translating KeyEvents into KyEvents, and MouseEvents into MsEvents.

AWTInputEventDispatcher(Display<?>) - Constructor for class org.scijava.ui.awt.AWTInputEventDispatcher

Creates an AWT input event dispatcher for the given display.

AWTInputEventDispatcher(Display<?>, EventService) - Constructor for class org.scijava.ui.awt.AWTInputEventDispatcher

Creates an AWT input event dispatcher for the given display.

AWTInputHarvester - Class in org.scijava.ui.awt.widget

AWTInputHarvester is an InputHarvester that collects input parameter values from the user using an AWTInputPanel dialog box.

AWTInputHarvester() - Constructor for class org.scijava.ui.awt.widget.AWTInputHarvester

 

AWTInputPanel - Class in org.scijava.ui.awt.widget

AWT implementation of InputPanel.

AWTInputPanel() - Constructor for class org.scijava.ui.awt.widget.AWTInputPanel

 

AWTInputWidget<T> - Class in org.scijava.ui.awt.widget

Common superclass for AWT-based input widgets.

AWTInputWidget() - Constructor for class org.scijava.ui.awt.widget.AWTInputWidget

 

AWTMenuBarCreator - Class in org.scijava.ui.awt.menu

Populates an AWT MenuBar with menu items from a ShadowMenu.

AWTMenuBarCreator() - Constructor for class org.scijava.ui.awt.menu.AWTMenuBarCreator

 

AWTMenuCreator - Class in org.scijava.ui.awt.menu

Populates an AWT Menu with menu items from a ShadowMenu.

AWTMenuCreator() - Constructor for class org.scijava.ui.awt.menu.AWTMenuCreator

 

AWTMessageWidget - Class in org.scijava.ui.awt.widget

AWT implementation of message widget.

AWTMessageWidget() - Constructor for class org.scijava.ui.awt.widget.AWTMessageWidget

 

AWTNumberWidget - Class in org.scijava.ui.awt.widget

AWT implementation of number chooser widget.

AWTNumberWidget() - Constructor for class org.scijava.ui.awt.widget.AWTNumberWidget

 

AWTObjectWidget - Class in org.scijava.ui.awt.widget

AWT implementation of object selector widget.

AWTObjectWidget() - Constructor for class org.scijava.ui.awt.widget.AWTObjectWidget

 

AWTPopupMenuCreator - Class in org.scijava.ui.awt.menu

Populates an AWT PopupMenu with menu items from a ShadowMenu.

AWTPopupMenuCreator() - Constructor for class org.scijava.ui.awt.menu.AWTPopupMenuCreator

 

AWTStatusBar - Class in org.scijava.ui.awt

AWT implementation of StatusBar.

AWTStatusBar(Context) - Constructor for class org.scijava.ui.awt.AWTStatusBar

 

AWTTextWidget - Class in org.scijava.ui.awt.widget

AWT implementation of text field widget.

AWTTextWidget() - Constructor for class org.scijava.ui.awt.widget.AWTTextWidget

 

AWTToggleWidget - Class in org.scijava.ui.awt.widget

AWT implementation of boolean toggle widget.

AWTToggleWidget() - Constructor for class org.scijava.ui.awt.widget.AWTToggleWidget

 

AWTToolBar - Class in org.scijava.ui.awt

Button bar with selectable tools, similar to ImageJ 1.x.

AWTToolBar(Context) - Constructor for class org.scijava.ui.awt.AWTToolBar

 

AWTUI - Class in org.scijava.ui.awt

AWT-based user interface for ImageJ.

AWTUI() - Constructor for class org.scijava.ui.awt.AWTUI

 

AWTWindowEventDispatcher - Class in org.scijava.ui.awt

Rebroadcasts AWT WindowEvents as ImageJ WinEvents.

AWTWindowEventDispatcher(Display<?>) - Constructor for class org.scijava.ui.awt.AWTWindowEventDispatcher

Creates an AWT window event dispatcher for the given display.

AWTWindowEventDispatcher(EventService) - Constructor for class org.scijava.ui.awt.AWTWindowEventDispatcher

Creates an AWT window event dispatcher for a null display, using the given event service.

AWTWindows - Class in org.scijava.ui.awt

Utility methods for working with AWT Windows.

AZURE - Static variable in class org.scijava.util.Colors

 

B

base64(byte[]) - Static method in class org.scijava.util.DigestUtils

Converts the given byte array to a base64 string.

BaseJniExtractor - Class in org.scijava.nativelib

 

BaseJniExtractor() - Constructor for class org.scijava.nativelib.BaseJniExtractor

 

BaseJniExtractor(Class<?>) - Constructor for class org.scijava.nativelib.BaseJniExtractor

 

BasicDetails - Interface in org.scijava

An interface defining basic characteristics including name, label, description, and a table of key/value pairs.

basicRangeCheck(long, long) - Method in interface org.scijava.io.ByteBank

Ensures that the requested range satisfies basic sanity criteria.

batchableInputs(ModuleInfo) - Method in interface org.scijava.batch.BatchService

A collection of input ModuleItems of the given ModuleInfo that are supported (i.e.

BatchInput - Class in org.scijava.batch.input

Currency for use with BatchInputProvider methods

BatchInput(Class<?>, ModuleItem<?>) - Constructor for class org.scijava.batch.input.BatchInput

 

BatchInput(Type, ModuleItem<?>) - Constructor for class org.scijava.batch.input.BatchInput

 

BatchInputProvider<I> - Interface in org.scijava.batch.input

 

BatchModuleSearchActionFactory - Class in org.scijava.batch

Search action for executing a SciJava module in batch mode.

BatchModuleSearchActionFactory() - Constructor for class org.scijava.batch.BatchModuleSearchActionFactory

 

BatchService - Interface in org.scijava.batch

 

BeanshellBindings - Class in org.scijava.plugins.scripting.beanshell

Local variables for Beanshell interpreters.

BeanshellBindings(Interpreter) - Constructor for class org.scijava.plugins.scripting.beanshell.BeanshellBindings

 

BeanshellHighlighter - Class in org.scijava.ui.swing.script.highliters

SyntaxHighliter for "beanshell".

BeanshellHighlighter() - Constructor for class org.scijava.ui.swing.script.highliters.BeanshellHighlighter

 

BeanshellScriptEngine - Class in org.scijava.plugins.scripting.beanshell

BeanShell support for SciJava.

BeanshellScriptEngine() - Constructor for class org.scijava.plugins.scripting.beanshell.BeanshellScriptEngine

 

BeanshellScriptLanguage - Class in org.scijava.plugins.scripting.beanshell

An adapter of the BeanShell interpreter to the SciJava scripting interface.

BeanshellScriptLanguage() - Constructor for class org.scijava.plugins.scripting.beanshell.BeanshellScriptLanguage

 

begin(ScriptInfo) - Method in class org.scijava.grab.script.process.GrabScriptProcessor

 

begin(ScriptInfo) - Method in class org.scijava.script.process.DirectiveScriptProcessor

 

begin(ScriptInfo) - Method in class org.scijava.script.process.ParameterScriptProcessor

 

begin(ScriptInfo) - Method in interface org.scijava.script.process.ScriptProcessor

 

begin(ScriptInfo) - Method in class org.scijava.script.process.ShebangScriptProcessor

 

behaviour() - Method in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler.BehaviourEntry

 

Behaviour - Interface in org.scijava.ui.behaviour

 

behaviour(Behaviour, String, String...) - Method in class org.scijava.ui.behaviour.util.Behaviours

 

BehaviourEntry(InputTrigger, T) - Constructor for class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler.BehaviourEntry

 

BehaviourMap - Class in org.scijava.ui.behaviour

Maps String keys to Behaviours.

BehaviourMap() - Constructor for class org.scijava.ui.behaviour.BehaviourMap

Creates an BehaviourMap with no parent and no mappings.

Behaviours - Class in org.scijava.ui.behaviour.util

Convenience class for adding to a InputTriggerMap/BehaviourMap pair, with InputTriggerMap triggers that are read from a given InputTriggerConfig.

Behaviours(InputTriggerAdder.Factory, String...) - Constructor for class org.scijava.ui.behaviour.util.Behaviours

Construct with new, empty InputTriggerMap and BehaviourMap.

Behaviours(InputTriggerMap, BehaviourMap, InputTriggerAdder.Factory, String...) - Constructor for class org.scijava.ui.behaviour.util.Behaviours

Construct with the specified InputTriggerMap and BehaviourMap.

BEIGE - Static variable in class org.scijava.util.Colors

 

best(String) - Static method in class org.scijava.util.DigestUtils

Gets the given string's best available hash.

best(byte[]) - Static method in class org.scijava.util.DigestUtils

Gets the given byte array's best available hash.

bestBase64(String) - Static method in class org.scijava.util.DigestUtils

Gets the base64 string of the given string's best available hash.

bestBase64(byte[]) - Static method in class org.scijava.util.DigestUtils

Gets the base64 string of the given byte array's best available hash.

bestHex(String) - Static method in class org.scijava.util.DigestUtils

Gets the hex string of the given string's best available hash.

bestHex(byte[]) - Static method in class org.scijava.util.DigestUtils

Gets the hex string of the given byte array's best available hash.

BigIntegerToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.BigIntegerToBigDecimalConverter

 

BISESearcher - Class in org.scijava.search.web

A searcher for the Bio-Imaging Search Engine.

BISESearcher() - Constructor for class org.scijava.search.web.BISESearcher

 

BISQUE - Static variable in class org.scijava.util.Colors

 

BITWISE_AND - Static variable in class org.scijava.parsington.Operators

 

BITWISE_OR - Static variable in class org.scijava.parsington.Operators

 

bitwiseAnd(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

bitwiseAnd(int, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

bitwiseAnd(long, long) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

bitwiseAnd(BigInteger, BigInteger) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

bitwiseAnd(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator

Applies the Operators.BITWISE_AND operator.

bitwiseOr(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

bitwiseOr(int, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

bitwiseOr(long, long) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

bitwiseOr(BigInteger, BigInteger) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

bitwiseOr(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator

Applies the Operators.BITWISE_OR operator.

BLACK - Static variable in class org.scijava.util.Colors

 

BLANCHEDALMOND - Static variable in class org.scijava.util.Colors

 

BLUE - Static variable in class org.scijava.util.Colors

 

BLUEVIOLET - Static variable in class org.scijava.util.Colors

 

Bookmark - Class in org.scijava.ui.swing.script

A "bookmark" is a stored location (line, file) in the text editor.

Bookmark(TextEditorTab, GutterIconInfo) - Constructor for class org.scijava.ui.swing.script.Bookmark

 

BookmarkDialog - Class in org.scijava.ui.swing.script

TODO

BookmarkDialog(Frame, Vector<Bookmark>) - Constructor for class org.scijava.ui.swing.script.BookmarkDialog

 

BoolArray - Class in org.scijava.util

An extensible array of boolean elements.

BoolArray() - Constructor for class org.scijava.util.BoolArray

Constructs an extensible array of booleans, backed by a fixed-size array.

BoolArray(int) - Constructor for class org.scijava.util.BoolArray

Constructs an extensible array of booleans, backed by a fixed-size array.

BoolArray(boolean[]) - Constructor for class org.scijava.util.BoolArray

Constructs an extensible array of booleans, backed by the given fixed-size array.

BoolArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.BoolArrayUnwrapper

 

BoolArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.BoolArrayWrapper

 

BoolColumn - Class in org.scijava.table

Efficient implementation of Column for boolean primitives.

BoolColumn() - Constructor for class org.scijava.table.BoolColumn

 

BoolColumn(String) - Constructor for class org.scijava.table.BoolColumn

 

BoolTable - Interface in org.scijava.table

A table of boolean values.

box(Class<T>) - Static method in class org.scijava.util.Types

Returns the non-primitive Class closest to the given type.

braces(Object[]) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

braces(Object[]) - Method in interface org.scijava.parsington.eval.StandardEvaluator

Applies the Operators.BRACES operator.

BRACES - Static variable in class org.scijava.parsington.Operators

 

brackets(Object[]) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

brackets(Object[]) - Method in interface org.scijava.parsington.eval.StandardEvaluator

Applies the Operators.BRACKETS operator.

BRACKETS - Static variable in class org.scijava.parsington.Operators

 

BROWN - Static variable in class org.scijava.util.Colors

 

BrowsableLocation - Interface in org.scijava.io.location

A Location that offers methods to browse other locations relative to it.

buffer - Variable in class org.scijava.minimaven.ReadInto

 

buffer - Variable in class org.scijava.util.LineOutputStream

 

buffer - Variable in class org.scijava.util.ReadInto

 

build() - Method in class org.scijava.minimaven.MavenProject

Compiles the project.

build(boolean) - Method in class org.scijava.minimaven.MavenProject

Compiles the project and optionally builds the .jar artifact.

build(boolean, boolean) - Method in class org.scijava.minimaven.MavenProject

Compiles the project and optionally builds the .jar artifact.

build(boolean, boolean, boolean) - Method in class org.scijava.minimaven.MavenProject

Compiles the project and optionally builds the .jar artifact.

buildAndInstall() - Method in class org.scijava.minimaven.MavenProject

Builds the artifact and installs it and its dependencies into ${imagej.app.directory}.

buildAndInstall(File) - Method in class org.scijava.minimaven.MavenProject

Builds the project an its dependencies, and installs them into the given ImageJ.app/ directory structure.

buildAndInstall(File, boolean) - Method in class org.scijava.minimaven.MavenProject

Builds the project an its dependencies, and installs them into the given ImageJ.app/ directory structure.

BuildEnvironment - Class in org.scijava.minimaven

The build environment of MiniMaven.

BuildEnvironment(PrintStream, boolean, boolean, boolean) - Constructor for class org.scijava.minimaven.BuildEnvironment

 

buildFromSource - Variable in class org.scijava.minimaven.MavenProject

 

buildJar() - Method in class org.scijava.minimaven.MavenProject

Builds the artifact.

buildNumber - Variable in class org.scijava.minimaven.SnapshotPOMHandler

 

buildPanel(InputPanel<P, W>, Module) - Method in class org.scijava.widget.AbstractInputHarvester

 

buildPanel(InputPanel<P, W>, Module) - Method in interface org.scijava.widget.InputHarvester

Populates the given InputPanel with widgets corresponding to the given Module instance.

built - Variable in class org.scijava.minimaven.MavenProject

 

BURLYWOOD - Static variable in class org.scijava.util.Colors

 

Button - Interface in org.scijava.widget

A interface used for marking input fields of plugin parameter dialogs as button fields.

BUTTON1_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger

 

BUTTON2_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger

 

BUTTON3_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger

 

buttonClicks - Variable in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler

 

buttonDrags - Variable in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler

 

buttons() - Method in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler.BehaviourEntry

 

ButtonWidget<U> - Interface in org.scijava.widget

Widget interface for buttons.

ByteArray - Class in org.scijava.util

An extensible array of byte elements.

ByteArray() - Constructor for class org.scijava.util.ByteArray

Constructs an extensible array of bytes, backed by a fixed-size array.

ByteArray(int) - Constructor for class org.scijava.util.ByteArray

Constructs an extensible array of bytes, backed by a fixed-size array.

ByteArray(byte[]) - Constructor for class org.scijava.util.ByteArray

Constructs an extensible array of bytes, backed by the given fixed-size array.

ByteArrayByteBank - Class in org.scijava.io

ByteBank implementation backed by a ByteArray.

ByteArrayByteBank() - Constructor for class org.scijava.io.ByteArrayByteBank

Creates a ByteArrayByteBank.

ByteArrayByteBank(int) - Constructor for class org.scijava.io.ByteArrayByteBank

Creates a ByteArrayByteBank with the specified initial capacity.

ByteArrayByteBank(byte[]) - Constructor for class org.scijava.io.ByteArrayByteBank

Creates a ByteArrayByteBank that wraps the provided byte array.

ByteArrayByteBank(ByteArray) - Constructor for class org.scijava.io.ByteArrayByteBank

Creates a ByteArrayByteBank that wraps the specified ByteArray.

ByteArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.ByteArrayUnwrapper

 

ByteArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.ByteArrayWrapper

 

ByteBank - Interface in org.scijava.io

A ByteBank is a self-growing buffer over arbitrary bytes.

ByteBufferByteBank - Class in org.scijava.io.nio

A ByteBank backed by a ByteBuffer.

ByteBufferByteBank() - Constructor for class org.scijava.io.nio.ByteBufferByteBank

 

ByteBufferByteBank(Function<Integer, ByteBuffer>) - Constructor for class org.scijava.io.nio.ByteBufferByteBank

 

ByteBufferByteBank(Function<Integer, ByteBuffer>, int) - Constructor for class org.scijava.io.nio.ByteBufferByteBank

 

ByteBufferByteBank(int) - Constructor for class org.scijava.io.nio.ByteBufferByteBank

 

ByteColumn - Class in org.scijava.table

Efficient implementation of Column for byte primitives.

ByteColumn() - Constructor for class org.scijava.table.ByteColumn

 

ByteColumn(String) - Constructor for class org.scijava.table.ByteColumn

 

Bytes - Class in org.scijava.util

Useful methods for reading, writing, decoding and converting bytes and byte arrays.

bytes(String) - Static method in class org.scijava.util.DigestUtils

Converts the given string to a byte array.

bytes(int) - Static method in class org.scijava.util.DigestUtils

Converts the given integer into a byte array.

BytesHandle - Class in org.scijava.io.handle

DataHandle for a BytesLocation.

BytesHandle() - Constructor for class org.scijava.io.handle.BytesHandle

 

BytesLocation - Class in org.scijava.io.location

Location backed by a ByteBank.

BytesLocation(ByteBank) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by the specified ByteBank.

BytesLocation(ByteBank, String) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by the specified ByteBank.

BytesLocation(int) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by a ByteArrayByteBank with the specified initial capacity, but with a reported size of 0.

BytesLocation(int, String) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by a ByteArrayByteBank with the specified initial capacity, but with a reported size of 0.

BytesLocation(ByteArray) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by a ByteArrayByteBank that wraps the specified ByteArray.

BytesLocation(ByteArray, String) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by a ByteArrayByteBank that wraps the specified ByteArray.

BytesLocation(byte[]) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by a ByteArrayByteBank which wraps the specified array.

BytesLocation(byte[], String) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by a ByteArrayByteBank which wraps the specified array.

BytesLocation(byte[], int, int) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by a ByteArrayByteBank with the specified initial capacity and the provided data.

BytesLocation(byte[], int, int, String) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by a ByteArrayByteBank with the specified initial capacity and the provided data.

ByteTable - Interface in org.scijava.table

A table of byte-precision integer values.

ByteToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToBigDecimalConverter

 

ByteToBigIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToBigIntegerConverter

 

ByteToDoubleConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToDoubleConverter

 

ByteToFloatConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToFloatConverter

 

ByteToIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToIntegerConverter

 

ByteToLongConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToLongConverter

 

ByteToShortConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToShortConverter

 

C

cacheAndReturn(String, MavenProject) - Method in class org.scijava.minimaven.MavenProject

 

cacheAnnotatedObjects(Class<?>, Query) - Static method in class org.scijava.util.ClassUtils

This method scans the provided class, its superclasses and interfaces for all supported Annotation : AnnotatedElement pairs.

cachedLocation(Location) - Method in class org.scijava.download.DiskLocationCache

 

cachedLocation(Location) - Method in interface org.scijava.download.LocationCache

Gets the cache location of a given data source.

CacheService - Interface in org.scijava.cache

Base interface for cache services in SciJava

CADETBLUE - Static variable in class org.scijava.util.Colors

 

call(String[], boolean) - Method in class org.scijava.minimaven.JavaCompiler

 

call(String[], boolean, boolean) - Method in class org.scijava.minimaven.JavaCompiler

 

call() - Method in class org.scijava.module.ModuleRunner

 

callback(Module) - Method in class org.scijava.module.AbstractModuleItem

 

callback(Module) - Method in interface org.scijava.module.ModuleItem

Invokes this item's callback function, if any, on the given module.

callback() - Method in class org.scijava.widget.DefaultWidgetModel

 

callback() - Method in interface org.scijava.widget.WidgetModel

Executes the callback associated with this widget's associated input.

callbacks() - Method in class org.scijava.script.ScriptInfo

Gets the list of routines which should be invoked each time the script is about to execute.

CallingClassUtils - Class in org.scijava.log

Utility class for getting the calling class of a method.

canAssign(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.isAssignable(java.lang.reflect.Type, java.lang.reflect.Type)

canAssign(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.isInstance(java.lang.Object, java.lang.Class<?>)

canCache(Location) - Method in class org.scijava.download.DiskLocationCache

 

canCache(Location) - Method in interface org.scijava.download.LocationCache

Gets whether the given location can be cached by this cache.

canCancel() - Method in class org.scijava.command.CommandInfo

 

canCancel() - Method in class org.scijava.command.DynamicCommandInfo

 

canCancel() - Method in interface org.scijava.module.ModuleInfo

Gets whether the module condones cancellation.

canCast(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use Types.isAssignable(Type, Type)

canCast(Object, Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use Types.isInstance(Object, Class)

canCast(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.isAssignable(java.lang.reflect.Type, java.lang.reflect.Type)

canCast(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.isInstance(java.lang.Object, java.lang.Class<?>)

cancel(String) - Method in interface org.scijava.Cancelable

Cancels the operation execution, with the given reason for doing so.

cancel() - Method in class org.scijava.command.CommandModule

Cancels the command, undoing the effects of any CommandModule.preview() calls.

cancel(String) - Method in class org.scijava.command.CommandModule

 

cancel(String) - Method in class org.scijava.command.ContextCommand

Cancels the command execution, with the given reason for doing so.

cancel(String) - Method in class org.scijava.command.DynamicCommand

 

cancel() - Method in class org.scijava.command.InteractiveCommand

 

cancel(String) - Method in class org.scijava.command.ModuleCommand

 

cancel() - Method in interface org.scijava.command.Previewable

Does whatever is necessary upon cancelation to reset things back to before the operation was executed.

cancel() - Method in class org.scijava.module.AbstractModule

 

cancel() - Method in interface org.scijava.module.Module

Performs necessary cleanup in response to cancellation of the module execution.

cancel(String) - Method in class org.scijava.module.process.AbstractPreprocessorPlugin

 

cancel() - Method in class org.scijava.options.OptionsPlugin

 

cancel() - Method in class org.scijava.plugins.commands.debug.ParamAssignOrder

 

cancel(String) - Method in class org.scijava.task.DefaultTask

 

cancel(String) - Method in class org.scijava.ui.AbstractInputHarvesterPlugin

 

Cancelable - Interface in org.scijava

An operation that can be canceled.

canConvert(ConversionRequest) - Method in class org.scijava.convert.AbstractConverter

 

canConvert(Object, Type) - Method in class org.scijava.convert.AbstractConverter

 

canConvert(Object, Class<?>) - Method in class org.scijava.convert.AbstractConverter

 

canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.AbstractConverter

 

canConvert(Class<?>, Type) - Method in class org.scijava.convert.AbstractConverter

Deprecated.

canConvert(Object, Class<?>) - Method in class org.scijava.convert.CastingConverter

 

canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.CastingConverter

 

canConvert(ConversionRequest) - Method in interface org.scijava.convert.Converter

Checks whether a given ConversionRequest can be processed, by converting the desired ConversionRequest.sourceClass() to its ConversionRequest.destClass() or ConversionRequest.destType().

canConvert(Object, Type) - Method in interface org.scijava.convert.Converter

Checks whether the given object's type can be converted to the specified type.

canConvert(Object, Class<?>) - Method in interface org.scijava.convert.Converter

Checks whether the given object's type can be converted to the specified type.

canConvert(Class<?>, Type) - Method in interface org.scijava.convert.Converter

Deprecated.

Use Converter.canConvert(Object, Type)

canConvert(Class<?>, Class<?>) - Method in interface org.scijava.convert.Converter

Deprecated.

Use Converter.canConvert(Object, Class)

canConvert(Class<?>, Type) - Method in class org.scijava.convert.DefaultConverter

Deprecated.

canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.DefaultConverter

Deprecated.

canConvert(ConversionRequest) - Method in class org.scijava.convert.NullConverter

 

canConvert(Object, Type) - Method in class org.scijava.convert.NullConverter

 

canConvert(Object, Class<?>) - Method in class org.scijava.convert.NullConverter

 

canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.NullConverter

 

canConvert(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use ConversionUtils.canConvert(Class, Class)

canConvert(Object, Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use ConversionUtils.canConvert(Object, Class)

canConvert(Class<?>, Type) - Static method in class org.scijava.util.ConversionUtils

Deprecated. 

canConvert(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils

Deprecated. 

canConvert(Object, Type) - Static method in class org.scijava.util.ConversionUtils

Deprecated. 

canConvert(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils

Deprecated. 

canDisplay(Class<?>) - Method in class org.scijava.display.AbstractDisplay

 

canDisplay(Class<?>) - Method in interface org.scijava.display.Display

Tests whether the display is capable of visualizing objects of the given class.

canDisplay(Object) - Method in interface org.scijava.display.Display

Tests whether the display is capable of visualizing the given object.

canDisplay(Class<?>) - Method in class org.scijava.table.DefaultTableDisplay

 

canHandleFile(File) - Method in class org.scijava.script.ScriptLanguageIndex

 

canHandleFile(String) - Method in class org.scijava.script.ScriptLanguageIndex

 

canHandleFile(File) - Method in interface org.scijava.script.ScriptService

TODO

canHandleFile(String) - Method in interface org.scijava.script.ScriptService

TODO

canOpen(String) - Method in class org.scijava.io.AbstractTypedIOService

 

canOpen(Location) - Method in class org.scijava.io.AbstractTypedIOService

 

canOpen(String) - Method in interface org.scijava.io.TypedIOService

 

canOpen(Location) - Method in interface org.scijava.io.TypedIOService

 

canOpen(Location) - Method in class org.scijava.table.io.DefaultTableIOService

 

canPreview() - Method in class org.scijava.command.CommandInfo

 

canPreview() - Method in class org.scijava.command.DynamicCommandInfo

 

canPreview() - Method in interface org.scijava.module.ModuleInfo

Gets whether the module supports previews.

canProvide(ModuleItem<?>) - Method in interface org.scijava.batch.input.BatchInputProvider

Check if a given ModuleItem can be populated by this input provider.

canProvide(ModuleItem<?>) - Method in class org.scijava.batch.input.FileBatchInputProvider

 

canRunHeadless() - Method in class org.scijava.command.CommandInfo

 

canRunHeadless() - Method in interface org.scijava.module.ModuleInfo

Gets whether the module condones headless execution.

canRunHeadless() - Method in class org.scijava.script.ScriptInfo

 

canSave(D, String) - Method in class org.scijava.io.AbstractTypedIOService

 

canSave(D, Location) - Method in class org.scijava.io.AbstractTypedIOService

 

canSave(D, String) - Method in interface org.scijava.io.TypedIOService

 

canSave(D, Location) - Method in interface org.scijava.io.TypedIOService

 

canView(Display<?>) - Method in class org.scijava.ui.headless.HeadlessDisplayViewer

 

canView(Display<?>) - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer

 

canView(T) - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer

 

canView(Display<?>) - Method in interface org.scijava.ui.viewer.DisplayViewer

Returns true if an instance of this display viewer can view the given display.

canView(Display<?>) - Method in class org.scijava.ui.viewer.table.AbstractTableDisplayViewer

 

canView(Display<?>) - Method in interface org.scijava.ui.viewer.text.TextDisplayViewer

 

capacity() - Method in class org.scijava.util.AbstractPrimitiveArray

Gets the current capacity of the backing array.

capacity() - Method in interface org.scijava.util.PrimitiveArray

Gets the current capacity of the backing array.

cast(Object, Class<T>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use Types.cast(Object, Class)

cast(Object, Class<T>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.cast(java.lang.Object, java.lang.Class<T>)

cast(Object, Class<T>) - Static method in class org.scijava.util.Types

Casts the given object to the specified type, or null if the types are incompatible.

CastingConverter - Class in org.scijava.convert

Minimal Converter implementation to do direct casting.

CastingConverter() - Constructor for class org.scijava.convert.CastingConverter

 

cdata(String) - Method in class org.scijava.util.XML

Obtains the CDATA identified by the given XPath expression.

cdata(Node) - Static method in class org.scijava.util.XML

Gets the CData beneath the given node.

cdata(Element, String) - Static method in class org.scijava.util.XML

Gets the CData beneath the given element's specified child.

centerWindow(Window) - Static method in class org.scijava.ui.awt.AWTWindows

Centers the given window on the screen.

centerWindow(Window, Window) - Static method in class org.scijava.ui.awt.AWTWindows

Centers the given window within the specified parent window.

centerWindow(Rectangle, Window) - Static method in class org.scijava.ui.awt.AWTWindows

Centers the given window within the specified bounds.

ch(CharSequence) - Method in class org.scijava.parsington.Position

 

ch(CharSequence, int) - Method in class org.scijava.parsington.Position

 

changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel

 

changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.EditorPane

 

changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.FileFunctions.LengthWarner

 

changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.FileFunctions.TextWrapper

 

changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.TextEditor

 

changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.widget.SwingFileWidget

 

changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.widget.SwingTextWidget

 

changeSetting(LogFormatter.Field, boolean) - Method in class org.scijava.ui.swing.console.LogFormatter

 

characters(char[], int, int) - Method in class org.scijava.minimaven.AbstractPOMHandler

 

CharArray - Class in org.scijava.util

An extensible array of char elements.

CharArray() - Constructor for class org.scijava.util.CharArray

Constructs an extensible array of chars, backed by a fixed-size array.

CharArray(int) - Constructor for class org.scijava.util.CharArray

Constructs an extensible array of chars, backed by a fixed-size array.

CharArray(char[]) - Constructor for class org.scijava.util.CharArray

Constructs an extensible array of chars, backed by the given fixed-size array.

CharArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.CharArrayUnwrapper

 

CharArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.CharArrayWrapper

 

charAt(int) - Method in class org.scijava.parsington.SubSequence

 

CharColumn - Class in org.scijava.table

Efficient implementation of Column for char primitives.

CharColumn() - Constructor for class org.scijava.table.CharColumn

 

CharColumn(String) - Constructor for class org.scijava.table.CharColumn

 

CharTable - Interface in org.scijava.table

A table of char values.

CHARTREUSE - Static variable in class org.scijava.util.Colors

 

check - Variable in class org.scijava.swing.checkboxtree.CheckBoxNodePanel

 

check(D, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

Throws IllegalArgumentException if (data, display) pair is incompatible.

check(boolean) - Static method in class org.scijava.util.CheckSezpoz

Deprecated.

check(File) - Static method in class org.scijava.util.CheckSezpoz

Deprecated.

checkBounds(int) - Method in class org.scijava.util.AbstractPrimitiveArray

Checks that the index is less than the size of the array.

CheckBoxNodeData - Class in org.scijava.swing.checkboxtree

A tree node user object, for use with a JTree, that tracks whether it is checked.

CheckBoxNodeData(String, boolean) - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodeData

 

CheckBoxNodeEditor - Class in org.scijava.swing.checkboxtree

A TreeCellEditor for check box tree nodes.

CheckBoxNodeEditor(JTree) - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodeEditor

 

CheckBoxNodePanel - Class in org.scijava.swing.checkboxtree

Helper class defining Swing components for check box node renderer UI.

CheckBoxNodePanel() - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodePanel

 

CheckBoxNodeRenderer - Class in org.scijava.swing.checkboxtree

A TreeCellRenderer for check box tree nodes.

CheckBoxNodeRenderer() - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodeRenderer

 

checkDirectory(File) - Static method in class org.scijava.util.CheckSezpoz

Deprecated.

checkDirectory(File, File, long) - Static method in class org.scijava.util.CheckSezpoz

Deprecated.

checkForOutsideChanges() - Method in class org.scijava.ui.swing.script.TextEditor

Check whether the file was edited outside of this EditorPane and ask the user whether to reload.

CheckInputsPreprocessor - Class in org.scijava.module.process

A preprocessor plugin that does a final check of input parameters, complaining if any required ones are null.

CheckInputsPreprocessor() - Constructor for class org.scijava.module.process.CheckInputsPreprocessor

 

checkJar(File) - Static method in class org.scijava.util.CheckSezpoz

Deprecated.

checkObject(Object) - Method in class org.scijava.display.AbstractDisplay

 

checkParentTag(String, String, String) - Method in class org.scijava.minimaven.MavenProject

 

checkReadPos(long, long) - Method in interface org.scijava.io.ByteBank

Check if we can read from the specified range

CheckSezpoz - Class in org.scijava.util

Deprecated.

checksum() - Method in class org.scijava.download.MultiWriteHandle

 

checksum() - Method in interface org.scijava.io.handle.DataHandle

Gets a "fast" checksum which succinctly represents the contents of the data stream.

checkUpToDate(boolean) - Method in class org.scijava.minimaven.MavenProject

 

checkWritePos(long, long) - Method in interface org.scijava.io.ByteBank

Check if we can write to the specified range

child(String) - Method in interface org.scijava.io.location.BrowsableLocation

Obtains a location with the given name, for whom this location is the parent.

child(String) - Method in class org.scijava.io.location.FileLocation

 

child(int) - Method in class org.scijava.parsington.SyntaxTree

 

children() - Method in interface org.scijava.io.location.BrowsableLocation

Obtains a collection of locations for whom this location is the parent.

children() - Method in class org.scijava.io.location.FileLocation

 

children - Variable in class org.scijava.minimaven.MavenProject

 

children() - Method in class org.scijava.util.DefaultTreeNode

 

children() - Method in interface org.scijava.util.TreeNode

Gets the node's children.

CHOCOLATE - Static variable in class org.scijava.util.Colors

 

ChoiceWidget<U> - Interface in org.scijava.widget

Widget interface for multiple choice selectors.

chooseFile(File, String) - Method in class org.scijava.ui.awt.AWTUI

 

chooseFile(File, String) - Method in class org.scijava.ui.DefaultUIService

 

chooseFile(String, File, String) - Method in class org.scijava.ui.DefaultUIService

 

chooseFile(String, File, String) - Method in class org.scijava.ui.headless.HeadlessUI

 

chooseFile(File, String) - Method in class org.scijava.ui.swing.AbstractSwingUI

 

chooseFile(File, String) - Method in interface org.scijava.ui.UIService

Prompts the user to choose a file.

chooseFile(String, File, String) - Method in interface org.scijava.ui.UIService

Prompts the user to choose a file.

chooseFile(File, String) - Method in interface org.scijava.ui.UserInterface

Prompts the user to choose a file.

chooseFile(String, File, String) - Method in interface org.scijava.ui.UserInterface

Prompts the user to choose a file.

chooseFiles(File, File[], FileFilter, String) - Method in class org.scijava.ui.DefaultUIService

 

chooseFiles(File, List<File>, FileFilter, String) - Method in class org.scijava.ui.DefaultUIService

 

chooseFiles(File, File[], FileFilter, String) - Method in class org.scijava.ui.swing.AbstractSwingUI

 

chooseFiles(File, File[], FileFilter, String) - Method in interface org.scijava.ui.UIService

Prompts the user to select one or multiple files.

chooseFiles(File, List<File>, FileFilter, String) - Method in interface org.scijava.ui.UIService

Prompts the user to select one or multiple files.

chooseFiles(File, File[], FileFilter, String) - Method in interface org.scijava.ui.UserInterface

Prompts the user to choose a list of files.

chooseFiles(File, List<File>, FileFilter, String) - Method in interface org.scijava.ui.UserInterface

Prompts the user to choose a list of files.

ChooseFontSize - Class in org.scijava.ui.swing.script.commands

Sets the font size in the current editor tab.

ChooseFontSize() - Constructor for class org.scijava.ui.swing.script.commands.ChooseFontSize

 

ChooseTabSize - Class in org.scijava.ui.swing.script.commands

Sets the tab size in the current editor tab.

ChooseTabSize() - Constructor for class org.scijava.ui.swing.script.commands.ChooseTabSize

 

chooseTaskToKill() - Method in class org.scijava.ui.swing.script.TextEditor

Query the list of running scripts and provide a dialog to choose one and kill it.

clampToRange(Class<?>, Number, Number, Number) - Static method in class org.scijava.util.NumberUtils

 

class2source - Static variable in class org.scijava.ui.swing.script.FileFunctions

 

ClassesSearcher - Class in org.scijava.search.classes

Searcher plugin for Java classes.

ClassesSearcher() - Constructor for class org.scijava.search.classes.ClassesSearcher

 

classifier - Variable in class org.scijava.minimaven.Coordinate

 

className() - Method in class org.scijava.annotations.IndexItem

Returns the name of the annotated class.

className() - Method in interface org.scijava.main.MainService.Main

Gets the name of the class containing the main method to run.

className - Variable in class org.scijava.ui.swing.script.autocompletion.ImportCompletionImpl

 

className - Variable in class org.scijava.ui.swing.script.autocompletion.JythonAutoCompletion.Import

 

ClassSearchResult - Class in org.scijava.search.classes

Search result for the ClassesSearcher.

ClassSearchResult(Class<?>, String) - Constructor for class org.scijava.search.classes.ClassSearchResult

 

ClassUtil - Class in org.scijava.ui.swing.script.autocompletion

 

ClassUtil() - Constructor for class org.scijava.ui.swing.script.autocompletion.ClassUtil

 

ClassUtil.JarProperties - Class in org.scijava.ui.swing.script.autocompletion

 

ClassUtils - Class in org.scijava.util

Useful methods for working with Class objects and primitive types.

clazz() - Method in class org.scijava.search.classes.ClassSearchResult

 

clean() - Method in class org.scijava.minimaven.MavenProject

 

clean(File) - Method in class org.scijava.minimaven.MavenProject

 

cleanup() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle

Clean up data structures after a handle has been closed in the AbstractHigherOrderHandle.close() method.

cleanup() - Method in class org.scijava.io.handle.ReadBufferDataHandle

 

cleanup() - Method in class org.scijava.io.handle.WriteBufferDataHandle

 

clear() - Method in class org.scijava.display.AbstractDisplay

 

clear() - Method in class org.scijava.event.DefaultEventHistory

 

clear() - Method in interface org.scijava.event.EventHistory

Clears the recorded event history.

clear() - Method in class org.scijava.io.ByteArrayByteBank

 

clear() - Method in interface org.scijava.io.ByteBank

Clears the buffer

clear() - Method in class org.scijava.io.DefaultRecentFileService

 

clear() - Method in class org.scijava.io.nio.ByteBufferByteBank

 

clear() - Method in interface org.scijava.io.RecentFileService

Clears the list of recent files.

clear() - Method in class org.scijava.menu.ShadowMenu

 

clear() - Method in class org.scijava.object.ObjectIndex

 

clear() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings

 

clear() - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings

 

clear() - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings

 

clear() - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings

 

clear(Class<?>) - Method in class org.scijava.prefs.DefaultPrefService

 

clear(String, String) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

clear(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

clear(Class<?>) - Method in interface org.scijava.prefs.PrefService

Deletes all of the given Class's keys from persistent storage.

clear(String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.remove(Class, String) or PrefService.clear(Class).

clear(String, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.remove(Class, String).

clear(Class<?>, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.remove(Class, String).

clear() - Method in interface org.scijava.table.Table

Removes all data (including row and column headers) from the table.

clear() - Method in class org.scijava.ui.behaviour.BehaviourMap

Removes all bindings from this map..

clear() - Method in class org.scijava.ui.behaviour.InputTriggerMap

Remove all bindings from this map.

clear() - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig

 

clear() - Method in class org.scijava.ui.behaviour.util.WrappedActionMap

 

clear() - Method in class org.scijava.ui.behaviour.util.WrappedBehaviourMap

 

clear() - Method in class org.scijava.ui.behaviour.util.WrappedInputMap

 

clear() - Method in class org.scijava.ui.behaviour.util.WrappedInputTriggerMap

 

clear() - Method in class org.scijava.ui.swing.commands.WatchEventsFrame

Clears the text pane.

clear() - Method in class org.scijava.ui.swing.console.ConsolePanel

 

clear() - Method in class org.scijava.ui.swing.console.LoggingPanel

 

clear() - Method in class org.scijava.ui.swing.console.LogRecorder

 

clear() - Method in class org.scijava.ui.swing.console.SwingConsolePane

 

clear() - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel

 

clear() - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel

 

clear() - Method in class org.scijava.util.AbstractPrimitiveArray

 

clear() - Method in class org.scijava.util.LastRecentlyUsed

Empties the data structure.

clear(Class<?>) - Static method in class org.scijava.util.Prefs

Deprecated.

 

clear(String) - Static method in class org.scijava.util.Prefs

Deprecated.

Clears the node.

clear(Preferences, String) - Static method in class org.scijava.util.Prefs

Deprecated.

 

clearAll() - Method in class org.scijava.prefs.DefaultPrefService

 

clearAll() - Method in interface org.scijava.prefs.PrefService

Deletes all information from the data store.

clearAll() - Static method in class org.scijava.util.Prefs

Deprecated.

Clears everything.

clearParameters() - Method in class org.scijava.module.AbstractModuleInfo

Clears input and output parameters.

clearParameters() - Method in class org.scijava.script.ScriptInfo

 

ClearRecent - Class in org.scijava.plugins.commands.io

Clears the list of recently opened files.

ClearRecent() - Constructor for class org.scijava.plugins.commands.io.ClearRecent

 

clearStatus() - Method in class org.scijava.app.DefaultStatusService

 

clearStatus() - Method in interface org.scijava.app.StatusService

Clears the status message.

click(int, int) - Method in interface org.scijava.ui.behaviour.ClickBehaviour

A click occuered at the specified location, where click can mean a regular mouse click or a typed key.

ClickBehaviour - Interface in org.scijava.ui.behaviour

 

ClojureBindings - Class in org.scijava.plugins.scripting.clojure

A Bindings wrapper around Clojure's local variables.

ClojureBindings() - Constructor for class org.scijava.plugins.scripting.clojure.ClojureBindings

 

ClojureScriptEngine - Class in org.scijava.plugins.scripting.clojure

A Clojure interpreter.

ClojureScriptEngine() - Constructor for class org.scijava.plugins.scripting.clojure.ClojureScriptEngine

 

ClojureScriptLanguage - Class in org.scijava.plugins.scripting.clojure

An adapter of the Clojure interpreter to the SciJava scripting interface.

ClojureScriptLanguage() - Constructor for class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage

 

clone() - Method in class org.scijava.util.MersenneTwisterFast

 

close() - Method in class org.scijava.annotations.legacy.LegacyReader

 

close() - Method in class org.scijava.console.MultiOutputStream

 

close() - Method in class org.scijava.Context

 

close() - Method in class org.scijava.display.AbstractDisplay

 

close() - Method in interface org.scijava.display.Display

Closes the display and disposes its resources.

close() - Method in class org.scijava.download.MultiWriteHandle

 

close() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle

 

close() - Method in class org.scijava.io.handle.BytesHandle

 

close() - Method in class org.scijava.io.handle.DataHandleInputStream

 

close() - Method in class org.scijava.io.handle.DataHandleOutputStream

 

close() - Method in class org.scijava.io.handle.DummyHandle

 

close() - Method in class org.scijava.io.handle.FileHandle

 

close() - Method in interface org.scijava.io.handle.StreamHandle

 

Close - Class in org.scijava.plugins.commands.display

Closes the active display.

Close() - Constructor for class org.scijava.plugins.commands.display.Close

 

close() - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow

 

close() - Method in class org.scijava.ui.swing.script.JTextAreaOutputStream

 

close() - Method in class org.scijava.ui.swing.script.JTextAreaWriter

 

close() - Method in class org.scijava.ui.swing.script.OutputPane

 

close() - Method in class org.scijava.ui.swing.search.SwingSearchBar

Closes the search results pane.

close() - Method in class org.scijava.ui.swing.viewer.SwingDisplayWindow

 

close() - Method in interface org.scijava.ui.viewer.DisplayWindow

 

close() - Method in class org.scijava.util.LineOutputStream

Flushes the current line buffer if any bytes are left in it.

CloseAll - Class in org.scijava.plugins.commands.display

Closes all displays.

CloseAll() - Constructor for class org.scijava.plugins.commands.display.CloseAll

 

CloseConfirmable - Interface in org.scijava.ui

Interface for UI components that require the user to deal with changed state before the component can be closed.

closeLine(SourceDataLine) - Method in class org.scijava.util.TunePlayer

 

closeOnEOF - Variable in class org.scijava.util.ReadInto

 

closesSearch() - Method in interface org.scijava.search.SearchAction

Deprecated.

Feature removed. By community demand, nothing forces the search results to close.

CodeGenerator - Interface in org.scijava.script

Deprecated.

To be removed in SciJava Common 3.0.0.

CodeGeneratorJava - Class in org.scijava.script

Deprecated.

To be removed in SciJava Common 3.0.0.

CodeGeneratorJava() - Constructor for class org.scijava.script.CodeGeneratorJava

Deprecated.

 

CodeRunner - Interface in org.scijava.run

A plugin which extends the RunService's execution handling.

colon(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

colon(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator

Applies the Operators.COLON operator.

COLON - Static variable in class org.scijava.parsington.Operators

 

ColorRGB - Class in org.scijava.util

A color with red, green and blue color components.

ColorRGB(int, int, int) - Constructor for class org.scijava.util.ColorRGB

 

ColorRGB(String) - Constructor for class org.scijava.util.ColorRGB

Parses a color from the given string.

ColorRGBA - Class in org.scijava.util

A color with red, green, blue and alpha color components.

ColorRGBA(int, int, int, int) - Constructor for class org.scijava.util.ColorRGBA

 

Colors - Class in org.scijava.util

Predefined ColorRGB objects and related utility methods.

ColorWidget<U> - Interface in org.scijava.widget

Widget interface for color choosers.

Column<T> - Interface in org.scijava.table

A column of data of a Table.

column(int) - Method in class org.scijava.table.io.TableIOOptions.Values

 

COLUMN_COUNT - Static variable in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel

 

columnDelimiter(char) - Method in class org.scijava.table.io.TableIOOptions

 

columnDelimiter() - Method in class org.scijava.table.io.TableIOOptions.Values

 

columnFormatter(int, Function<Object, String>) - Method in class org.scijava.table.io.TableIOOptions

 

columnParser(int, Function<String, Object>) - Method in class org.scijava.table.io.TableIOOptions

In case each data type vary between columns, this method can be used to set the parser for a specific column.

ColumnTableIOOptions - Class in org.scijava.table.io

 

ColumnTableIOOptions() - Constructor for class org.scijava.table.io.ColumnTableIOOptions

 

ColumnTableIOOptions.Values - Class in org.scijava.table.io

 

columnType(int, Class<?>) - Method in class org.scijava.table.io.TableIOOptions

In case each data type vary between columns, this method can be used to set the data type of a specific column.

combine(File) - Method in class org.scijava.annotations.AnnotationCombiner

Reads in annotations from all available resources and combines them.

combine() - Method in class org.scijava.util.CombineAnnotations

Deprecated.

Use AnnotationCombiner.combine(File) instead.

combine(File) - Method in interface org.scijava.util.Combiner

Combines a collection of items and writes the result to the provided directory.

combine(File) - Method in class org.scijava.util.ServiceCombiner

 

CombineAnnotations - Class in org.scijava.util

Deprecated.

Use AnnotationCombiner instead.

CombineAnnotations() - Constructor for class org.scijava.util.CombineAnnotations

Deprecated.

Use AnnotationCombiner() instead.

Combiner - Interface in org.scijava.util

Interface for combining structurally-delicate items (such as annotations) which need to be unified to a single output.

command() - Method in class org.scijava.AbstractGateway

 

Command - Interface in org.scijava.command

Command is a plugin that is executable.

command() - Method in interface org.scijava.Gateway

Gets this application context's CommandService.

Command - Class in org.scijava.ui.behaviour.io.gui

Behaviour or action name in a context.

Command(String, String) - Constructor for class org.scijava.ui.behaviour.io.gui.Command

 

CommandCodeRunner - Class in org.scijava.command.run

Runs the given Command class.

CommandCodeRunner() - Constructor for class org.scijava.command.run.CommandCodeRunner

 

CommandDescriptionBuilder - Class in org.scijava.ui.behaviour.io.gui

Utility class that is used to build a map of Commands to their description.

CommandDescriptionBuilder() - Constructor for class org.scijava.ui.behaviour.io.gui.CommandDescriptionBuilder

 

CommandFinder - Class in org.scijava.ui.swing.commands

A plugin to display the CommandFinderPanel in a dialog.

CommandFinder() - Constructor for class org.scijava.ui.swing.commands.CommandFinder

 

CommandFinderPanel - Class in org.scijava.ui.swing.commands

A panel that allows the user to search for SciJava commands.

CommandFinderPanel(ModuleService, String) - Constructor for class org.scijava.ui.swing.commands.CommandFinderPanel

 

CommandFinderPanel.CommandTableModel - Class in org.scijava.ui.swing.commands

 

commandHelp() - Method in class org.scijava.plugins.scripting.matlab.DefaultMATLABService

 

commandHelp() - Method in interface org.scijava.plugins.scripting.matlab.MATLABService

Builds a complete usage message by querying the MATLABCommands.help() method of all available commands.

CommandInfo - Class in org.scijava.command

A collection of metadata about a particular Command.

CommandInfo(String) - Constructor for class org.scijava.command.CommandInfo

Creates a new command metadata object.

CommandInfo(String, Plugin) - Constructor for class org.scijava.command.CommandInfo

Creates a new command metadata object.

CommandInfo(Class<? extends Command>) - Constructor for class org.scijava.command.CommandInfo

Creates a new command metadata object.

CommandInfo(Class<? extends Command>, Plugin) - Constructor for class org.scijava.command.CommandInfo

Creates a new command metadata object.

CommandInfo(PluginInfo<Command>) - Constructor for class org.scijava.command.CommandInfo

Creates a new command metadata object describing the same command as the given PluginInfo.

CommandInfo(PluginInfo<Command>, String, Class<? extends Command>, Plugin) - Constructor for class org.scijava.command.CommandInfo

 

CommandModule - Class in org.scijava.command

Module adapter class for working with a Command instance.

CommandModule(CommandInfo) - Constructor for class org.scijava.command.CommandModule

Creates a command module for the given PluginInfo.

CommandModule(CommandInfo, Command) - Constructor for class org.scijava.command.CommandModule

Creates a command module for the given CommandInfo, around the specified Command instance.

CommandModuleItem<T> - Class in org.scijava.command

ModuleItem implementation describing an input or output of a command.

CommandModuleItem(ModuleInfo, Field) - Constructor for class org.scijava.command.CommandModuleItem

 

CommandService - Interface in org.scijava.command

Interface for service that keeps track of available commands.

commandService() - Method in class org.scijava.platform.DefaultPlatformService

 

commandService() - Method in interface org.scijava.platform.PlatformService

 

commandsList - Variable in class org.scijava.ui.swing.commands.CommandFinderPanel

 

CommandTableModel(List<ModuleInfo>, String) - Constructor for class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel

 

compare(Prioritized, Prioritized) - Static method in class org.scijava.Priority

Compares two Prioritized objects.

compare(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils

Compares two Class objects using their fully qualified names.

compare(T, T) - Static method in class org.scijava.util.MiscUtils

Compares two comparable objects, even if one or both of them are null.

compare(T, T, boolean) - Static method in class org.scijava.util.MiscUtils

Compares two comparable objects, even if one or both of them are null.

compare(String, String) - Static method in class org.scijava.util.VersionUtils

Compares two version strings.

compareTo(ShadowMenu) - Method in class org.scijava.menu.ShadowMenu

 

compareTo(MavenProject) - Method in class org.scijava.minimaven.MavenProject

 

compareTo(Operator) - Method in class org.scijava.parsington.Operator

 

compareTo(Prioritized) - Method in interface org.scijava.Prioritized

 

compareTo(Prioritized) - Method in interface org.scijava.UIDetails

 

compareTo(POM) - Method in class org.scijava.util.POM

 

compareVersion(String, String) - Static method in class org.scijava.minimaven.BuildEnvironment

 

compareVersions(String, String) - Static method in class org.scijava.util.POM

Compares two version strings.

compile(String) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine

 

compile(Reader) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine

 

compile(String) - Method in class org.scijava.plugins.scripting.java.JavaEngine

Compiles and runs the specified .java class.

compile(Reader) - Method in class org.scijava.plugins.scripting.java.JavaEngine

Compiles and runs the specified .java class.

compile(File) - Method in class org.scijava.plugins.scripting.java.JavaEngine

Compiles the specified .java file.

compile(File, Writer) - Method in class org.scijava.plugins.scripting.java.JavaEngine

Compiles the specified .java file.

compile() - Method in class org.scijava.ui.swing.script.TextEditor

 

CompileError(Object) - Constructor for exception org.scijava.minimaven.JavaCompiler.CompileError

 

complement(Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

complement(int) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

complement(long) - Method in class org.scijava.parsington.eval.DefaultEvaluator

 

complement(Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator

Applies the Operators.COMPLEMENT operator.

COMPLEMENT - Static variable in class org.scijava.parsington.Operators

 

completionsFor(CompletionProvider, String, String, String) - Method in interface org.scijava.ui.swing.script.autocompletion.AutoCompletionListener

 

component - Variable in class org.scijava.ui.swing.script.FileFunctions.LengthWarner

 

component(Type) - Static method in class org.scijava.util.Types

Gets the component type of the given array type, or null if not an array.

configChanged() - Method in interface org.scijava.ui.behaviour.io.gui.VisualEditorPanel.ConfigChangeListener

Called when settings are changed in the visual editor.

configChangeListeners() - Method in class org.scijava.ui.behaviour.io.gui.VisualEditorPanel

Deprecated.

Use modelChangedListeners() instead.

configCommittedListeners() - Method in class org.scijava.ui.behaviour.io.gui.VisualEditorPanel

Please, see the documentation of VisualEditorPanel.modelChangedListeners and VisualEditorPanel.configCommittedListeners to understand when these listeners are triggered.

configToModel() - Method in class org.scijava.ui.behaviour.io.gui.VisualEditorPanel

 

configure(PlatformService) - Method in class org.scijava.platform.AbstractPlatform

 

configure(PlatformService) - Method in interface org.scijava.platform.Platform

Activates and configures the platform.

configure(PlatformService) - Method in class org.scijava.plugins.platforms.macos.MacOSPlatform

 

configure() - Method in interface org.scijava.tool.Tool

Occurs when the user right clicks this tool's icon.

confirmClose() - Method in interface org.scijava.ui.CloseConfirmable

 

confirmClose() - Method in class org.scijava.ui.swing.script.TextEditor

 

console() - Method in class org.scijava.AbstractGateway

 

console() - Method in interface org.scijava.Gateway

Gets this application context's ConsoleService.

ConsoleArgument - Interface in org.scijava.console

A plugin which extends an application's command line argument handling.

ConsolePane<C> - Interface in org.scijava.ui.console

A panel which displays stdout and stderr console output.

ConsolePanel - Class in org.scijava.ui.swing.console

ConsolePanel is a JPanel holding a JTextArea.

ConsolePanel(Context) - Constructor for class org.scijava.ui.swing.console.ConsolePanel

 

ConsoleService - Interface in org.scijava.console

Interface for service that manages interaction with the console.

ConsoleUtils - Class in org.scijava.console

Deprecated.

Use alternatives instead (see individual method docs).

ConsoleUtils() - Constructor for class org.scijava.console.ConsoleUtils

Deprecated.

 

consume() - Method in class org.scijava.event.SciJavaEvent

 

contains(Object) - Method in class org.scijava.display.AbstractDisplay

 

contains(Object) - Method in class org.scijava.menu.ShadowMenu

 

contains(Object) - Method in class org.scijava.object.ObjectIndex

 

contains(Object) - Method in class org.scijava.object.SortedObjectIndex

 

contains(Object) - Method in interface org.scijava.table.Column

 

contains(Object) - Method in interface org.scijava.table.Table

Gets whether the table contains the given column.

contains(byte[], byte) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(boolean[], boolean) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(char[], char) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(double[], double) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(float[], float) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(int[], int) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(long[], long) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(short[], short) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(Object[], Object) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(boolean) - Method in class org.scijava.util.BoolArray

 

contains(Object) - Method in class org.scijava.util.BoolArray

 

contains(byte) - Method in class org.scijava.util.ByteArray

 

contains(Object) - Method in class org.scijava.util.ByteArray

 

contains(char) - Method in class org.scijava.util.CharArray

 

contains(Object) - Method in class org.scijava.util.CharArray

 

contains(double) - Method in class org.scijava.util.DoubleArray

 

contains(Object) - Method in class org.scijava.util.DoubleArray

 

contains(float) - Method in class org.scijava.util.FloatArray

 

contains(Object) - Method in class org.scijava.util.FloatArray

 

contains(int) - Method in class org.scijava.util.IntArray

 

contains(Object) - Method in class org.scijava.util.IntArray

 

contains(IntCoords) - Method in class org.scijava.util.IntRect

Tests whether the given coordinates lie within the rectangle.

contains(Object) - Method in class org.scijava.util.LastRecentlyUsed

 

contains(long) - Method in class org.scijava.util.LongArray

 

contains(Object) - Method in class org.scijava.util.LongArray

 

contains(Object) - Method in class org.scijava.util.ObjectArray

 

contains(RealCoords) - Method in class org.scijava.util.RealRect

Tests whether the given coordinates lie within the rectangle.

contains(short) - Method in class org.scijava.util.ShortArray

 

contains(Object) - Method in class org.scijava.util.ShortArray

 

containsAll(Collection<?>) - Method in class org.scijava.display.AbstractDisplay

 

containsAll(Collection<?>) - Method in class org.scijava.menu.ShadowMenu

 

containsAll(Collection<?>) - Method in class org.scijava.object.ObjectIndex

 

containsAll(Collection<?>) - Method in class org.scijava.object.SortedObjectIndex

 

containsAll(Collection<?>) - Method in interface org.scijava.table.Column

 

containsAll(Collection<?>) - Method in interface org.scijava.table.Table

Returns true if the table contains all of the columns of the specified collection.

containsAll(Collection<?>) - Method in class org.scijava.util.BoolArray

 

containsAll(Collection<?>) - Method in class org.scijava.util.ByteArray

 

containsAll(Collection<?>) - Method in class org.scijava.util.CharArray

 

containsAll(Collection<?>) - Method in class org.scijava.util.DoubleArray

 

containsAll(Collection<?>) - Method in class org.scijava.util.FloatArray

 

containsAll(Collection<?>) - Method in class org.scijava.util.IntArray

 

containsAll(Collection<?>) - Method in class org.scijava.util.LastRecentlyUsed

 

containsAll(Collection<?>) - Method in class org.scijava.util.LongArray

 

containsAll(Collection<?>) - Method in class org.scijava.util.ObjectArray

 

containsAll(Collection<?>) - Method in class org.scijava.util.ShortArray

 

containsKey(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings

 

containsKey(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings

 

containsKey(Object) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings

 

containsKey(Object) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings

 

containsProject(String, String) - Method in class org.scijava.minimaven.BuildEnvironment

 

containsProject(Coordinate) - Method in class org.scijava.minimaven.BuildEnvironment

 

containsTypeVars(Type) - Static method in class org.scijava.util.Types

Learn, recursively, whether any of the type parameters associated with type are bound to variables.

containsValue(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings

 

containsValue(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings

 

containsValue(Object) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings

 

containsValue(Object) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings

 

context() - Method in class org.scijava.AbstractContextual

 

context() - Method in class org.scijava.command.CommandModule

 

context() - Method in class org.scijava.command.DynamicCommand

 

Context - Class in org.scijava

Top-level SciJava application context, which initializes and maintains a list of services.

Context() - Constructor for class org.scijava.Context

Creates a new SciJava application context with all available services.

Context(boolean) - Constructor for class org.scijava.Context

Creates a new SciJava application context.

Context(boolean, boolean) - Constructor for class org.scijava.Context

Creates a new SciJava application context.

Context(Class...) - Constructor for class org.scijava.Context

Creates a new SciJava application context with the specified services (and any required service dependencies).

Context(Collection<Class<? extends Service>>) - Constructor for class org.scijava.Context

Creates a new SciJava application context with the specified services (and any required service dependencies).

Context(Collection<Class<? extends Service>>, boolean) - Constructor for class org.scijava.Context

Creates a new SciJava application context with the specified services (and any required service dependencies).

Context(PluginIndex) - Constructor for class org.scijava.Context

Creates a new SciJava application context with all available services from the specified PluginIndex.

Context(Collection<Class<? extends Service>>, PluginIndex) - Constructor for class org.scijava.Context

Creates a new SciJava application context with the specified services (and any required service dependencies).

Context(Collection<Class<? extends Service>>, PluginIndex, boolean) - Constructor for class org.scijava.Context

Creates a new SciJava application context with the specified services (and any required service dependencies).

context() - Method in interface org.scijava.Contextual

Gets the application context to which the object belongs.

context() - Method in class org.scijava.script.ScriptInfo

 

context() - Method in class org.scijava.script.ScriptModule

 

context() - Method in class org.scijava.search.classes.ClassSearchResult

 

context() - Method in class org.scijava.search.module.ModuleSearchResult

 

context() - Method in interface org.scijava.search.SearchResult

 

CONTEXT_MENU_ROOT - Static variable in annotation type org.scijava.plugin.Plugin

Deprecated.

Use a context-specific menu root string instead. This one is too general. There is no such thing as a "default context menu" since such a thing wouldn't be a context menu!

ContextCommand - Class in org.scijava.command

A command that knows its context.

ContextCommand() - Constructor for class org.scijava.command.ContextCommand

 

ContextDisposingEvent - Class in org.scijava.event

Event to be published just before disposing a context.

ContextDisposingEvent() - Constructor for class org.scijava.event.ContextDisposingEvent

 

contexts - Static variable in class org.scijava.ui.swing.script.TextEditor

 

Contextual - Interface in org.scijava

An object that belongs to a SciJava application context.

conversionBuffer() - Method in class org.scijava.io.handle.AbstractDataHandle

 

conversionBuffer() - Method in interface org.scijava.io.handle.DataHandle

 

ConversionRequest - Class in org.scijava.convert

Currency for use in Converter and ConvertService methods.

ConversionRequest(Object, Type) - Constructor for class org.scijava.convert.ConversionRequest

 

ConversionRequest(Type, Type) - Constructor for class org.scijava.convert.ConversionRequest

 

ConversionRequest(Object, Type, Type) - Constructor for class org.scijava.convert.ConversionRequest

 

ConversionUtils - Class in org.scijava.util

Deprecated.

use ConvertService and Types

convert() - Method in class org.scijava.AbstractGateway

 

convert(Object, Type) - Method in class org.scijava.convert.AbstractConverter

 

convert(ConversionRequest) - Method in class org.scijava.convert.AbstractConverter

 

convert(Object, Type) - Method in class org.scijava.convert.AbstractConvertService

 

convert(Object, Class<T>) - Method in class org.scijava.convert.AbstractConvertService

 

convert(ConversionRequest) - Method in class org.scijava.convert.AbstractConvertService

 

convert(Object, Class<T>) - Method in class org.scijava.convert.AbstractDelegateConverter

 

convert(Object, Class<T>) - Method in class org.scijava.convert.CastingConverter

 

convert(Object, Type) - Method in interface org.scijava.convert.Converter

As Converter.convert(Object, Class) but capable of creating and populating multi-element objects (Collections and array types).

convert(Object, Class<T>) - Method in interface org.scijava.convert.Converter

Converts the given object to an object of the specified type.

convert(ConversionRequest) - Method in interface org.scijava.convert.Converter

Converts the given ConversionRequest.sourceObject() to the specified ConversionRequest.destClass() or ConversionRequest.destType().

convert(Object, Type) - Method in interface org.scijava.convert.ConvertService

 

convert(Object, Class<T>) - Method in interface org.scijava.convert.ConvertService

 

convert(ConversionRequest) - Method in interface org.scijava.convert.ConvertService

 

convert(Object, Type) - Method in class org.scijava.convert.DefaultConverter

 

convert(Object, Class<T>) - Method in class org.scijava.convert.DefaultConverter

 

convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.FileArrayToStringConverter

 

convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.FileToStringConverter

 

convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.StringToFileArrayConverter

 

convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.StringToFileConverter

 

convert(Object, Class<T>) - Method in class org.scijava.convert.NullConverter

 

convert(Number) - Method in class org.scijava.convert.NumberToBigDecimalConverter

 

convert(Number) - Method in class org.scijava.convert.NumberToBigIntegerConverter

 

convert(Number) - Method in class org.scijava.convert.NumberToDoubleConverter

 

convert(Number) - Method in class org.scijava.convert.NumberToFloatConverter

 

convert(Number) - Method in class org.scijava.convert.NumberToIntegerConverter

 

convert(Number) - Method in class org.scijava.convert.NumberToLongConverter

 

convert(Object, Class<T>) - Method in class org.scijava.convert.NumberToNumberConverter

 

convert(Number) - Method in class org.scijava.convert.NumberToNumberConverter

 

convert(Number) - Method in class org.scijava.convert.NumberToShortConverter

 

convert(Object, Class<T>) - Method in class org.scijava.convert.PrimitiveArrayUnwrapper

 

convert(Object, Class<T>) - Method in class org.scijava.convert.PrimitiveArrayWrapper

 

convert(Object, Class<T>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use ConversionUtils.convert(Object, Class)

convert(Object, Type) - Static method in class org.scijava.util.ConversionUtils

Deprecated. 

convert(Object, Class<T>) - Static method in class org.scijava.util.ConversionUtils

Deprecated. 

convertData(DragAndDropData) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

 

convertData(DragAndDropData) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Converts the given DragAndDropData to the type of data object supported by this handler.

convertDataUnchecked(DragAndDropData) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

Converts the given data to this handler's native data type, without verifying compatibility first.

Converter<I,O> - Interface in org.scijava.convert

Extensible conversion Plugin for converting between classes and types.

convertObject(Object) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

 

convertObject(Object) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Converts the given object to the type of data object supported by this handler.

convertObjectUnchecked(Object) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

Converts the given object to this handler's native data type, without verifying compatibility first.

ConvertService - Interface in org.scijava.convert

Service for converting between types using an extensible plugin: Converter.

convertSpacesToTabs() - Method in class org.scijava.ui.swing.script.EditorPane

 

convertTabsToSpaces() - Method in class org.scijava.ui.swing.script.EditorPane

 

convertToEnum(String, Class<T>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.enumValue(java.lang.String, java.lang.Class<T>)

Coordinate - Class in org.scijava.minimaven

TODO

Coordinate() - Constructor for class org.scijava.minimaven.Coordinate

 

Coordinate(String, String, String) - Constructor for class org.scijava.minimaven.Coordinate

 

Coordinate(String, String, String, String, boolean, String, String) - Constructor for class org.scijava.minimaven.Coordinate

Deprecated.

Coordinate(String, String, String, String, boolean, String, String, Set<String>) - Constructor for class org.scijava.minimaven.Coordinate

 

coordinate - Variable in class org.scijava.minimaven.MavenProject

 

copy(DataHandle<Location>, DataHandle<Location>) - Static method in class org.scijava.io.handle.DataHandles

Copies all bytes from the input to the output handle.

copy(DataHandle<Location>, DataHandle<Location>, Task) - Static method in class org.scijava.io.handle.DataHandles

Copies all bytes from the input to the output handle, reporting the progress to the provided task.

copy(DataHandle<Location>, DataHandle<Location>, int) - Static method in class org.scijava.io.handle.DataHandles

Copies up to length bytes from the input to the output handle.

copy(DataHandle<Location>, DataHandle<Location>, long, Task) - Static method in class org.scijava.io.handle.DataHandles

Copies up to length bytes from the input to the output handle, reporting the progress to the provided task.

copy(DataHandle<Location>, DataHandle<Location>, long, Task, int) - Static method in class org.scijava.io.handle.DataHandles

Copies up to length bytes from the input to the output handle, reporting the progress to the provided task.

copy(InputStream, File) - Static method in class org.scijava.minimaven.BuildEnvironment

 

copy(InputStream, OutputStream, boolean) - Static method in class org.scijava.minimaven.BuildEnvironment

 

copyArray() - Method in class org.scijava.util.AbstractPrimitiveArray

 

copyArray() - Method in interface org.scijava.util.PrimitiveArray

Returns a copy of the primitive-array array.

copyDependencies(File, boolean) - Method in class org.scijava.minimaven.MavenProject

Copy the runtime dependencies

copyFile(File, File) - Static method in class org.scijava.minimaven.BuildEnvironment

 

copyOrThis() - Method in class org.scijava.optional.AbstractOptions

 

copySelectionToClipboard() - Method in class org.scijava.ui.swing.console.LoggingPanel

 

copyTo(InputStream, String) - Method in class org.scijava.ui.swing.script.FileFunctions

 

copyTo(InputStream, OutputStream) - Method in class org.scijava.ui.swing.script.FileFunctions

 

CORAL - Static variable in class org.scijava.util.Colors

 

cornerText(String) - Method in class org.scijava.table.io.TableIOOptions

 

cornerText() - Method in class org.scijava.table.io.TableIOOptions.Values

 

CORNFLOWERBLUE - Static variable in class org.scijava.util.Colors

 

CORNSILK - Static variable in class org.scijava.util.Colors

 

count() - Method in class org.scijava.parsington.SyntaxTree

 

create(SearchResult) - Method in class org.scijava.batch.BatchModuleSearchActionFactory

 

create(String) - Static method in class org.scijava.input.Accelerator

Creates an accelerator from the given string representation.

create(D) - Method in interface org.scijava.plugin.FactoryPlugin

 

create(Class<? extends SciJavaPlugin>) - Static method in class org.scijava.plugin.PluginInfo

Creates a PluginInfo for the given plugin class.

create(Class<P>, Class<PT>) - Static method in class org.scijava.plugin.PluginInfo

Creates a PluginInfo for the given plugin class of the specified plugin type.

create(Class<P>) - Method in interface org.scijava.plugin.PTService

Creates an instance of the given plugin class.

create(Class<P>) - Method in interface org.scijava.plugin.SingletonService

 

create(D) - Method in interface org.scijava.plugin.WrapperService

Creates a new plugin instance wrapping the given associated data object.

create(SearchResult) - Method in class org.scijava.search.classes.JavadocSearchActionFactory

 

create(SearchResult) - Method in class org.scijava.search.classes.SourceSearchActionFactory

 

create(SearchResult) - Method in class org.scijava.search.module.RunModuleSearchActionFactory

 

create(SearchResult) - Method in class org.scijava.search.snippet.RunSnippetActionFactory

 

create(SearchResult) - Method in class org.scijava.search.web.OpenInBrowserActionFactory

 

createAutoCompletion(CompletionProvider) - Method in class org.scijava.ui.swing.script.languagesupport.JythonLanguageSupportPlugin

Ignores the argument.

createBindings() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine

 

createBindings() - Method in class org.scijava.script.AbstractScriptEngine

 

createBindings() - Method in class org.scijava.script.AdaptedScriptEngine

 

createButton16(ImageIcon) - Static method in class org.scijava.ui.swing.StaticSwingUtils

 

createButton16(ImageIcon, String) - Static method in class org.scijava.ui.swing.StaticSwingUtils

 

createColumn(String) - Method in class org.scijava.table.AbstractTable

 

createColumn(String) - Method in class org.scijava.table.DefaultBoolTable

 

createColumn(String) - Method in class org.scijava.table.DefaultByteTable

 

createColumn(String) - Method in class org.scijava.table.DefaultCharTable

 

createColumn(String) - Method in class org.scijava.table.DefaultDoubleTable

 

createColumn(String) - Method in class org.scijava.table.DefaultFloatTable

 

createColumn(String) - Method in class org.scijava.table.DefaultGenericTable

 

createColumn(String) - Method in class org.scijava.table.DefaultIntTable

 

createColumn(String) - Method in class org.scijava.table.DefaultLongTable

 

createColumn(String) - Method in class org.scijava.table.DefaultShortTable

 

createConsoleMenu() - Method in class org.scijava.ui.swing.AbstractSwingUI

 

createDisplay(Object) - Method in class org.scijava.display.DefaultDisplayService

 

createDisplay(String, Object) - Method in class org.scijava.display.DefaultDisplayService

 

createDisplay(Object) - Method in interface org.scijava.display.DisplayService

Creates a display for the given object, publishing a DisplayCreatedEvent to notify interested parties.

createDisplay(String, Object) - Method in interface org.scijava.display.DisplayService

Creates a display for the given object, publishing a DisplayCreatedEvent to notify interested parties.

createDisplayPanel(T) - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer

 

createDisplayQuietly(Object) - Method in class org.scijava.display.DefaultDisplayService

 

createDisplayQuietly(Object) - Method in interface org.scijava.display.DisplayService

Creates a display for the given object, without publishing a DisplayCreatedEvent.

createDisplayWindow(Display<?>) - Method in class org.scijava.ui.awt.AWTUI

 

createDisplayWindow(Display<?>) - Method in class org.scijava.ui.headless.HeadlessUI

 

createDisplayWindow(Display<?>) - Method in class org.scijava.ui.swing.mdi.SwingMdiUI

 

createDisplayWindow(Display<?>) - Method in class org.scijava.ui.swing.sdi.SwingSDIUI

 

createDisplayWindow(Display<?>, EventService) - Static method in class org.scijava.ui.swing.sdi.SwingSDIUI

Utility method for creating SwingDisplayWindows.

createDisplayWindow(Display<?>) - Method in interface org.scijava.ui.UserInterface

Creates a new display window housing the given display, or null if not applicable.

createExactService(Class<S>) - Method in class org.scijava.service.ServiceHelper

Instantiates a service of the given class, registering it in the index.

createFileFilter(String) - Static method in class org.scijava.ui.swing.widget.SwingFileWidget

Creates a FileFilter that filters files and/or directories according to the given widget style.

createImage(int, int) - Static method in class org.scijava.ui.awt.AWTImageTools

Creates a BufferedImage compatible with the graphics environment.

createInputPanel() - Method in class org.scijava.ui.awt.widget.AWTInputHarvester

 

createInputPanel() - Method in class org.scijava.ui.swing.widget.SwingInputHarvester

 

createInputPanel() - Method in interface org.scijava.widget.InputHarvester

Constructs an empty InputPanel.

createInstance() - Method in class org.scijava.command.CommandInfo

 

createInstance() - Method in interface org.scijava.Instantiable

Creates an object.

createInstance(PluginInfo<PT>) - Method in class org.scijava.plugin.DefaultPluginService

 

createInstance() - Method in class org.scijava.plugin.PluginInfo

 

createInstance(PluginInfo<PT>) - Method in interface org.scijava.plugin.PluginService

Creates an instance of the given plugin.

createInstances(List<PluginInfo<PT>>) - Method in class org.scijava.plugin.DefaultPluginService

 

createInstances(List<PluginInfo<PT>>) - Method in interface org.scijava.plugin.PluginService

Creates an instance of each of the plugins on the given list.

createInstancesOfType(Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService

 

createInstancesOfType(Class<PT>) - Method in interface org.scijava.plugin.PluginService

Creates one instance each of the available plugins of the given type.

createLeaf(ShadowMenu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator

 

createLeaf(ShadowMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator

 

createMenus(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator

 

createMenus(ShadowMenu, T) - Method in interface org.scijava.menu.MenuCreator

 

createMenus(MenuCreator<T>, T) - Method in interface org.scijava.menu.MenuService

Populates a UI-specific application menu structure.

createMenus(String, MenuCreator<T>, T) - Method in interface org.scijava.menu.MenuService

Populates a UI-specific menu structure.

createMenus() - Method in class org.scijava.ui.awt.AWTUI

 

createMenus() - Method in class org.scijava.ui.swing.AbstractSwingUI

Creates a JMenuBar from the master ShadowMenu structure.

createMenus(ShadowMenu, T) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator

 

createModel(Number, Number, Number, Number) - Method in class org.scijava.ui.swing.widget.SpinnerNumberModelFactory

 

createModel(InputPanel<?, ?>, Module, ModuleItem<?>, List<?>) - Method in interface org.scijava.widget.WidgetService

Create a WidgetModel for the given module input.

createModule(Command) - Method in class org.scijava.command.CommandInfo

Instantiates the module described by this module info, around the specified existing command instance.

createModule() - Method in class org.scijava.command.CommandInfo

 

createModule(ModuleInfo) - Method in class org.scijava.module.DefaultModuleService

 

createModule() - Method in interface org.scijava.module.ModuleInfo

Instantiates the module described by this module info.

createModule(ModuleInfo) - Method in interface org.scijava.module.ModuleService

Creates an instance of the given module.

createModule() - Method in interface org.scijava.module.MutableModuleInfo

 

createModule() - Method in class org.scijava.script.ScriptInfo

 

createNewDocument() - Method in class org.scijava.ui.swing.script.TextEditor

 

createNewDocument(String, String) - Method in class org.scijava.ui.swing.script.TextEditor

 

createNewFromTemplate(File, File) - Method in class org.scijava.ui.swing.script.TextEditor

Open a new editor to edit the given file, with a templateFile if the file does not exist yet

createNonLeaf(ShadowMenu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator

 

createNonLeaf(ShadowMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator

 

createPath(File, String) - Static method in class org.scijava.test.TestUtils

Creates an empty file at the given path, creating intermediate directories as necessary.

createTask(String) - Method in class org.scijava.task.DefaultTaskService

 

createTask(String) - Method in interface org.scijava.task.TaskService

Creates a new, empty Task.

createTemporaryDirectory(String) - Static method in class org.scijava.test.TestUtils

Makes a temporary directory for use with unit tests.

createTemporaryDirectory(String, Class<?>) - Static method in class org.scijava.test.TestUtils

Makes a temporary directory for use with unit tests.

createTemporaryDirectory(String, Class<?>, String) - Static method in class org.scijava.test.TestUtils

Makes a temporary directory for use with unit tests.

createTemporaryDirectory(String) - Static method in class org.scijava.util.FileUtils

Creates a temporary directory.

createTemporaryDirectory(String, String) - Static method in class org.scijava.util.FileUtils

Creates a temporary directory.

createTemporaryDirectory(String, String, File) - Static method in class org.scijava.util.FileUtils

Creates a temporary directory.

createUI() - Method in class org.scijava.ui.AbstractUserInterface

Subclasses override to control UI creation.

createUI() - Method in class org.scijava.ui.awt.AWTUI

 

createUI() - Method in class org.scijava.ui.swing.AbstractSwingUI

 

CRIMSON - Static variable in class org.scijava.util.Colors

 

CTRL_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger

 

current - Variable in class org.scijava.ui.swing.script.ErrorHandler

 

currentOffset - Variable in class org.scijava.ui.swing.script.ErrorHandler

 

CustomDrawnTool - Interface in org.scijava.tool

Tools that would like to define how they are drawn implement this interface.

CYAN - Static variable in class org.scijava.util.Colors