Deprecated List (SciJava Javadocs 0-SNAPSHOT API)

Deprecated Interfaces
Interface and Description
org.scijava.platform.AppEventService Use `AppService` and `App` instead.
org.scijava.script.CodeGenerator To be removed in SciJava Common 3.0.0.

Deprecated Classes
Class and Description
org.scijava.util.CheckSezpoz
org.scijava.script.CodeGeneratorJava To be removed in SciJava Common 3.0.0.
org.scijava.util.CombineAnnotations Use `AnnotationCombiner` instead.
org.scijava.console.ConsoleUtils Use alternatives instead (see individual method docs).
org.scijava.util.ConversionUtils use `ConvertService` and `Types`
org.scijava.platform.DefaultAppEventService Use `AppService` and `App` instead.
org.scijava.util.GenericUtils Use `Types` instead.
org.scijava.ui.headlessUI.HeadlessUI Use `HeadlessUI` instead.
org.scijava.script.InvocationObject To be removed in SciJava Common 3.0.0.
org.scijava.script.ParameterObject To be removed in SciJava Common 3.0.0.
org.scijava.util.Prefs See `PrefService`
org.scijava.command.console.RunArgument Use `RunArgument` instead.
org.scijava.script.console.RunScriptArgument Use `RunArgument` instead.
org.scijava.plugin.SortablePlugin Use `AbstractRichPlugin` instead.

Deprecated Fields
Field and Description
org.scijava.plugin.Plugin.APPLICATION_MENU_ROOT Use `UIDetails.APPLICATION_MENU_ROOT` instead.
org.scijava.plugin.Plugin.CONTEXT_MENU_ROOT Use a context-specific menu root string instead. This one is too general. There is no such thing as a "default context menu" since such a thing wouldn't be a context menu!
org.scijava.log.LogService.DEBUG Use `LogLevel.DEBUG`.
org.scijava.log.LogService.ERROR Use `LogLevel.ERROR`.
org.scijava.util.CheckSezpoz.FILE_NAME
org.scijava.Priority.FIRST_PRIORITY Use `Priority.FIRST` instead.
org.scijava.Priority.HIGH_PRIORITY Use `Priority.HIGH` instead.
org.scijava.log.LogService.INFO Use `LogLevel.INFO`.
org.scijava.Priority.LAST_PRIORITY Use `Priority.LAST` instead.
org.scijava.Priority.LOW_PRIORITY Use `Priority.LOW` instead.
org.scijava.ui.headlessUI.HeadlessUI.NAME Use `HeadlessUI.NAME` instead.
org.scijava.log.LogService.NONE Use `LogLevel.NONE`.
org.scijava.Priority.NORMAL_PRIORITY Use `Priority.NORMAL` instead.
org.scijava.log.LogService.TRACE Use `LogLevel.TRACE`.
org.scijava.util.CheckSezpoz.verbose
org.scijava.Priority.VERY_HIGH_PRIORITY Use `Priority.VERY_HIGH` instead.
org.scijava.Priority.VERY_LOW_PRIORITY Use `Priority.VERY_LOW` instead.
org.scijava.log.LogService.WARN Use `LogLevel.WARN`.

Deprecated Methods
Method and Description
org.scijava.platform.AppEventService.about() Use `App.about()` instead.
org.scijava.ui.behaviour.io.gui.VisualEditorPanel.addConfigChangeListener(VisualEditorPanel.ConfigChangeListener) Use `modelChangedListeners().add(listener)` instead.
org.scijava.util.ConversionUtils.canAssign(Class<?>, Class<?>) use `Types.isAssignable(java.lang.reflect.Type, java.lang.reflect.Type)`
org.scijava.util.ConversionUtils.canAssign(Object, Class<?>) use `Types.isInstance(java.lang.Object, java.lang.Class<?>)`
org.scijava.util.ConversionUtils.canCast(Class<?>, Class<?>) use `Types.isAssignable(java.lang.reflect.Type, java.lang.reflect.Type)`
org.scijava.util.ClassUtils.canCast(Class<?>, Class<?>) use `Types.isAssignable(Type, Type)`
org.scijava.util.ConversionUtils.canCast(Object, Class<?>) use `Types.isInstance(java.lang.Object, java.lang.Class<?>)`
org.scijava.util.ClassUtils.canCast(Object, Class<?>) use `Types.isInstance(Object, Class)`
org.scijava.util.ConversionUtils.canConvert(Class<?>, Class<?>)
org.scijava.util.ClassUtils.canConvert(Class<?>, Class<?>) use `ConversionUtils.canConvert(Class, Class)`
org.scijava.convert.DefaultConverter.canConvert(Class<?>, Class<?>)
org.scijava.convert.Converter.canConvert(Class<?>, Class<?>) Use `Converter.canConvert(Object, Class)`
org.scijava.util.ConversionUtils.canConvert(Class<?>, Type)
org.scijava.convert.DefaultConverter.canConvert(Class<?>, Type)
org.scijava.convert.Converter.canConvert(Class<?>, Type) Use `Converter.canConvert(Object, Type)`
org.scijava.convert.AbstractConverter.canConvert(Class<?>, Type)
org.scijava.util.ConversionUtils.canConvert(Object, Class<?>)
org.scijava.util.ClassUtils.canConvert(Object, Class<?>) use `ConversionUtils.canConvert(Object, Class)`
org.scijava.util.ConversionUtils.canConvert(Object, Type)
org.scijava.util.ConversionUtils.cast(Object, Class<T>) use `Types.cast(java.lang.Object, java.lang.Class<T>)`
org.scijava.util.ClassUtils.cast(Object, Class<T>) use `Types.cast(Object, Class)`
org.scijava.util.CheckSezpoz.check(boolean)
org.scijava.util.CheckSezpoz.check(File)
org.scijava.util.CheckSezpoz.checkDirectory(File)
org.scijava.util.CheckSezpoz.checkDirectory(File, File, long)
org.scijava.util.CheckSezpoz.checkJar(File)
org.scijava.prefs.PrefService.clear(Class<?>, String) Use `PrefService.remove(Class, String)`.
org.scijava.prefs.DefaultPrefService.clear(Class<?>, String)
org.scijava.prefs.PrefService.clear(String) Use `PrefService.remove(Class, String)` or `PrefService.clear(Class)`.
org.scijava.prefs.PrefService.clear(String, String) Use `PrefService.remove(Class, String)`.
org.scijava.prefs.DefaultPrefService.clear(String, String)
org.scijava.search.SearchAction.closesSearch() Feature removed. By community demand, nothing forces the search results to close.
org.scijava.util.CombineAnnotations.combine() Use `AnnotationCombiner.combine(File)` instead.
org.scijava.ui.behaviour.io.gui.VisualEditorPanel.configChangeListeners() Use `modelChangedListeners()` instead.
org.scijava.util.ConversionUtils.convert(Object, Class<T>)
org.scijava.util.ClassUtils.convert(Object, Class<T>) use `ConversionUtils.convert(Object, Class)`
org.scijava.util.ConversionUtils.convert(Object, Type)
org.scijava.util.ConversionUtils.convertToEnum(String, Class<T>) use `Types.enumValue(java.lang.String, java.lang.Class<T>)`
org.scijava.ui.swing.StaticSwingUtils.dispatchToEDT(Runnable) Use `ThreadService.queue(java.lang.Runnable)`.
org.scijava.ui.swing.StaticSwingUtils.dispatchToEDTWait(Runnable) Use `ThreadService.invoke(java.lang.Runnable)`.
org.scijava.util.MiscUtils.equal(Object, Object) Use `Objects.equals(Object, Object)` instead.
org.scijava.ui.swing.script.FileFunctions.findResources(String, Iterable<URL>) Use `FileUtils.findResources(String, Iterable)` instead.
org.scijava.ui.swing.script.FileFunctions.findResources(String, String) Use `FileUtils.findResources(String, String, File)` instead.
org.scijava.util.CheckSezpoz.fix(File, File)
org.scijava.prefs.PrefService.get(String) Use `PrefService.get(Class, String)`.
org.scijava.prefs.PrefService.get(String, String) Use `PrefService.get(Class, String, String)`.
org.scijava.util.CombineAnnotations.getAnnotationFiles() Use `AnnotationCombiner.getAnnotationFiles()` instead.
org.scijava.platform.PlatformService.getAppEventService() Use `AppService` and `App` instead.
org.scijava.util.ClassUtils.getArrayClass(Class<?>) Use `Types.array(Class)` instead.
org.scijava.prefs.PrefService.getBoolean(String, boolean) Use `PrefService.getBoolean(Class, String, boolean)`.
org.scijava.log.CallingClassUtils.getCallingClass() Use `CallingClassUtils.getCallingClassName()` instead. Warning: This method throws a IllegalStateException as soon as it comes across a class that can't be loaded with the default class loader. Inspects the stack trace to return the class that calls this method, but ignores every class annotated with @IgnoreAsCallingClass.
org.scijava.util.GenericUtils.getClass(Type) Use `Types.raw(java.lang.reflect.Type)` instead.
org.scijava.util.ConversionUtils.getClass(Type) use `Types.raw(java.lang.reflect.Type)`
org.scijava.util.GenericUtils.getClasses(Type) Use `Types.raws(java.lang.reflect.Type)` instead.
org.scijava.platform.AppEventService.getCommands() Tag relevant commands instead: `attrs = { @Attr(name = "app-command") }`
org.scijava.platform.PlatformService.getCommandService() Use `PlatformService.commandService()` instead.
org.scijava.util.GenericUtils.getComponentClass(Type) Use `Types.component(java.lang.reflect.Type)` and `Types.raw(java.lang.reflect.Type)` instead.
org.scijava.util.ConversionUtils.getComponentClass(Type) use `Types.raws(java.lang.reflect.Type)` and `Types.component(java.lang.reflect.Type)`
org.scijava.util.GenericUtils.getComponentType(Type) Use `Types.component(java.lang.reflect.Type)` instead.
org.scijava.io.event.IOEvent.getDescriptor() use `IOEvent.getLocation()` instead
org.scijava.io.event.DataSavedEvent.getDestination() use `IOEvent.getLocation()` instead
org.scijava.prefs.PrefService.getDouble(String, double) Use `PrefService.getDouble(Class, String, double)`.
org.scijava.command.CommandService.getEventService() Use `CommandService.eventService()` instead.
org.scijava.object.ObjectService.getEventService() Use `ObjectService.eventService()` instead.
org.scijava.display.DisplayService.getEventService() Use `DisplayService.eventService()` instead.
org.scijava.input.InputService.getEventService() Use `InputService.eventService()` instead.
org.scijava.platform.PlatformService.getEventService() Use `PlatformService.eventService()` instead.
org.scijava.util.ClassUtils.getField(Class<?>, String) Use `Types.field(java.lang.Class<?>, java.lang.String)` instead.
org.scijava.util.ClassUtils.getField(String, String) Use `Types.field(java.lang.Class<?>, java.lang.String)` instead.
org.scijava.util.GenericUtils.getFieldClasses(Field, Class<?>) Use `Types.fieldType(Field, Class)` and `Types.raws(java.lang.reflect.Type)` instead.
org.scijava.util.GenericUtils.getFieldType(Field, Class<?>) Use `Types.fieldType(Field, Class)` instead.
org.scijava.prefs.PrefService.getFloat(String, float) Use `PrefService.getFloat(Class, String, float)`.
org.scijava.util.ClassUtils.getGenericType(Field, Class<?>) Use `Types.fieldType(Field, Class)` instead.
org.scijava.convert.ConvertService.getHandler(Class<?>, Class<?>) Use `ConvertService.getHandler(Object, Class)`
org.scijava.convert.ConvertService.getHandler(Class<?>, Type) Use `ConvertService.getHandler(Object, Type)`
org.scijava.prefs.PrefService.getInt(String, int) Use `PrefService.getInt(Class, String, int)`.
org.scijava.prefs.PrefService.getIterable(Class<?>, String) Use `PrefService.getList(Class, String)`.
org.scijava.prefs.DefaultPrefService.getIterable(Class<?>, String)
org.scijava.prefs.PrefService.getIterable(String) User `PrefService.getList(Class, String)`.
org.scijava.script.ScriptModule.getLanguage() Use `ScriptInfo.getLanguage()` instead.
org.scijava.prefs.PrefService.getList(Class<?>) Use `PrefService.getList(Class, String)`.
org.scijava.prefs.DefaultPrefService.getList(Class<?>)
org.scijava.prefs.PrefService.getList(String) Use `PrefService.getList(Class, String)`.
org.scijava.prefs.PrefService.getList(String, String) Use `PrefService.getList(Class, String)`.
org.scijava.prefs.DefaultPrefService.getList(String, String)
org.scijava.util.ClassUtils.getLocation(Class<?>) Use `Types.location(java.lang.Class<?>)` and `Types.load(java.lang.String)` instead.
org.scijava.util.ClassUtils.getLocation(String) Use `Types.location(java.lang.Class<?>)` and `Types.load(java.lang.String)` instead.
org.scijava.util.ClassUtils.getLocation(String, ClassLoader) Use `Types.location(java.lang.Class<?>)` and `Types.load(java.lang.String)` instead.
org.scijava.prefs.PrefService.getLong(String, long) Use `PrefService.getLong(Class, String, long)`.
org.scijava.prefs.PrefService.getMap(Class<?>) Use `PrefService.getMap(Class, String)`.
org.scijava.prefs.DefaultPrefService.getMap(Class<?>)
org.scijava.prefs.PrefService.getMap(String) Use `PrefService.getMap(Class, String)`.
org.scijava.prefs.PrefService.getMap(String, String) Use `PrefService.getMap(Class, String)`.
org.scijava.prefs.DefaultPrefService.getMap(String, String)
org.scijava.util.GenericUtils.getMethodReturnClasses(Method, Class<?>) Use `Types.methodReturnType(java.lang.reflect.Method, java.lang.Class<?>)` and `Types.raws(java.lang.reflect.Type)` instead.
org.scijava.util.GenericUtils.getMethodReturnType(Method, Class<?>) Use `Types.methodReturnType(java.lang.reflect.Method, java.lang.Class<?>)` instead.
org.scijava.command.CommandService.getModuleService() Use `CommandService.moduleService()` instead.
org.scijava.util.ConversionUtils.getNonprimitiveType(Class<T>) use `Types.box(java.lang.Class<T>)`
org.scijava.util.ClassUtils.getNonprimitiveType(Class<T>) use `Types.box(Class)`
org.scijava.util.ConversionUtils.getNullValue(Class<T>) Use `Types.nullValue(java.lang.Class<T>)` instead.
org.scijava.util.ClassUtils.getNullValue(Class<T>) use `Types.nullValue(Class)`
org.scijava.display.DisplayService.getObjectService() Use `DisplayService.objectService()` instead.
org.scijava.plugin.PTService.getPluginService() Use `PTService.pluginService()` instead.
org.scijava.display.DisplayService.getPluginService() Use `DisplayService.pluginService()` instead.
org.scijava.log.AbstractLogService.getPrefix(int) Use `LogLevel.prefix(int)` instead.
org.scijava.util.ConversionUtils.getPrimitiveType(Class<T>) use `Types.unbox(java.lang.Class<T>)`
org.scijava.io.location.LocationService.getResolver(URI) Use `HandlerService.getHandler(DT)` instead.
org.scijava.io.event.DataOpenedEvent.getSource() use `IOEvent.getLocation()` instead
org.scijava.ui.swing.script.FileFunctions.getSourcePath(String) Use `FileFunctions.getSourceURL(String)` instead.
org.scijava.util.GenericUtils.getTypeParameter(Type, Class<?>, int) Use `Types.param(java.lang.reflect.Type, java.lang.Class<?>, int)` instead.
org.scijava.util.ClassUtils.getTypes(Field, Class<?>) Use `Types.fieldType(Field, Class)` and `Types.raws(java.lang.reflect.Type)` instead.
org.scijava.ui.swing.options.OptionsLookAndFeel.getUI()
org.scijava.util.ClassUtils.hasClass(String) Use `Types.load(String)` instead.
org.scijava.util.ClassUtils.hasClass(String, ClassLoader) Use `Types.load(String, ClassLoader)` instead.
org.scijava.console.ConsoleUtils.hasParam(LinkedList<String>) Use `AbstractConsoleArgument.getParam(LinkedList)` instead.
org.scijava.util.ClassUtils.isBoolean(Class<?>) Use `Types.isBoolean(java.lang.Class<?>)` instead.
org.scijava.util.ClassUtils.isByte(Class<?>) Use `Types.isByte(java.lang.Class<?>)` instead.
org.scijava.util.ClassUtils.isCharacter(Class<?>) Use `Types.isCharacter(java.lang.Class<?>)` instead.
org.scijava.util.ClassUtils.isDouble(Class<?>) Use `Types.isDouble(java.lang.Class<?>)` instead.
org.scijava.util.ClassUtils.isFloat(Class<?>) Use `Types.isFloat(java.lang.Class<?>)` instead.
org.scijava.util.ClassUtils.isInteger(Class<?>) Use `Types.isInteger(java.lang.Class<?>)` instead.
org.scijava.util.ClassUtils.isLong(Class<?>) Use `Types.isLong(java.lang.Class<?>)` instead.
org.scijava.util.ClassUtils.isNumber(Class<?>) Use `Types.isNumber(java.lang.Class<?>)` instead.
org.scijava.module.Module.isResolved(String) Use `Module.isInputResolved(String)` instead.
org.scijava.script.ScriptInfo.isReturnValueDeclared() Use `ScriptInfo.isReturnValueAppended()` instead.
org.scijava.util.ClassUtils.isShort(Class<?>) Use `Types.isShort(java.lang.Class<?>)` instead.
org.scijava.util.ClassUtils.isText(Class<?>) Use `Types.isText(java.lang.Class<?>)` instead.
org.scijava.util.ClassUtils.loadClass(String) Use `Types.load(String)` instead.
org.scijava.util.ClassUtils.loadClass(String, boolean) Use `Types.load(String, boolean)` instead.
org.scijava.util.ClassUtils.loadClass(String, ClassLoader) Use `Types.load(String, ClassLoader)` instead.
org.scijava.util.ClassUtils.loadClass(String, ClassLoader, boolean) Use `Types.load(String, ClassLoader, boolean)` instead.
org.scijava.nativelib.NativeLibraryUtil.loadNativeLibrary(Class<?>, String)
org.scijava.module.ModuleItem.loadValue()
org.scijava.module.AbstractModuleItem.loadValue()
org.scijava.util.CombineAnnotations.main(String[]) Use `AnnotationCombiner.main(String[])` instead.
org.scijava.util.FileUtils.matchVersionedFilename(String) see `FileUtils.stripFilenameVersion(String)`
org.scijava.platform.DefaultAppEventService.onEvent(AppAboutEvent)
org.scijava.platform.DefaultAppEventService.onEvent(AppPreferencesEvent)
org.scijava.platform.DefaultAppEventService.onEvent(AppQuitEvent)
org.scijava.console.ConsoleUtils.parseParameterString(String) Use `ParseService` instead.
org.scijava.console.ConsoleUtils.parseParameterString(String, LogService) Use `ParseService` instead.
org.scijava.console.ConsoleUtils.parseParameterString(String, ModuleInfo) Use `ParseService` instead.
org.scijava.console.ConsoleUtils.parseParameterString(String, ModuleInfo, LogService) Use `ParseService` instead.
org.scijava.platform.AppEventService.prefs() Use `App.prefs()` instead.
org.scijava.prefs.PrefService.put(String, boolean) Use `PrefService.put(Class, String, boolean)`.
org.scijava.prefs.PrefService.put(String, double) Use `PrefService.put(Class, String, double)`.
org.scijava.prefs.PrefService.put(String, float) Use `PrefService.put(Class, String, float)`.
org.scijava.prefs.PrefService.put(String, int) Use `PrefService.put(Class, String, int)`.
org.scijava.ui.behaviour.KeyStrokeAdder.put(String, KeyStroke...)
org.scijava.prefs.PrefService.put(String, long) Use `PrefService.put(Class, String, long)`.
org.scijava.prefs.PrefService.put(String, String) Use `PrefService.put(Class, String, String)`.
org.scijava.prefs.PrefService.putIterable(Class<?>, Iterable<String>, String) Use `PrefService.put(Class, String, Iterable)`.
org.scijava.prefs.PrefService.putIterable(Iterable<String>, String) Use `PrefService.put(Class, String, Iterable)`.
org.scijava.prefs.PrefService.putList(Class<?>, List<String>) Use `PrefService.put(Class, String, Iterable)`.
org.scijava.prefs.DefaultPrefService.putList(Class<?>, List<String>)
org.scijava.prefs.PrefService.putList(Class<?>, List<String>, String) Use `PrefService.put(Class, String, Iterable)`.
org.scijava.prefs.PrefService.putList(List<String>, String) Use `PrefService.put(Class, String, Iterable)`.
org.scijava.prefs.PrefService.putList(String, List<String>) Use `PrefService.put(Class, String, Iterable)`.
org.scijava.prefs.DefaultPrefService.putList(String, List<String>)
org.scijava.prefs.PrefService.putList(String, List<String>, String) Use `PrefService.put(Class, String, Iterable)`.
org.scijava.prefs.DefaultPrefService.putList(String, List<String>, String)
org.scijava.prefs.PrefService.putMap(Class<?>, Map<String, String>) Use `PrefService.put(Class, String, Map)`.
org.scijava.prefs.DefaultPrefService.putMap(Class<?>, Map<String, String>)
org.scijava.prefs.PrefService.putMap(Class<?>, Map<String, String>, String) Use `PrefService.put(Class, String, Map)`.
org.scijava.prefs.PrefService.putMap(Map<String, String>, String) Use `PrefService.put(Class, String, Map)`.
org.scijava.prefs.PrefService.putMap(String, Map<String, String>) Use `PrefService.put(Class, String, Map)`.
org.scijava.prefs.DefaultPrefService.putMap(String, Map<String, String>)
org.scijava.prefs.PrefService.putMap(String, Map<String, String>, String) Use `PrefService.put(Class, String, Map)`.
org.scijava.prefs.DefaultPrefService.putMap(String, Map<String, String>, String)
org.scijava.platform.AppEventService.quit() Use `App.quit()` instead.
org.scijava.prefs.PrefService.remove(String, String) Use `PrefService.remove(Class, String)`.
org.scijava.prefs.DefaultPrefService.remove(String, String)
org.scijava.ui.behaviour.io.gui.VisualEditorPanel.removeConfigChangeListener(VisualEditorPanel.ConfigChangeListener) Use `modelChangedListeners().remove(listener)` instead.
org.scijava.module.ModuleItem.saveValue(T)
org.scijava.module.AbstractModuleItem.saveValue(T)
org.scijava.script.ScriptModule.setLanguage(ScriptLanguage) Use `ScriptInfo.setLanguage(ScriptLanguage)` instead.
org.scijava.module.Module.setResolved(String, boolean) Use `Module.resolveInput(String)` and `Module.unresolveInput(String)` instead.
org.scijava.ui.swing.options.OptionsLookAndFeel.setUI(UserInterface)
org.scijava.convert.ConvertService.supports(Class<?>, Class<?>) Use `ConvertService.supports(Object, Class)`
org.scijava.convert.ConvertService.supports(Class<?>, Type) Use `ConvertService.supports(Object, Type)`
org.scijava.util.CheckSezpoz.writeXMLFile(Document, File)

Deprecated Constructors
Constructor and Description
org.scijava.util.CombineAnnotations() Use `AnnotationCombiner()` instead.
org.scijava.minimaven.Coordinate(String, String, String, String, boolean, String, String)
org.scijava.io.event.DataOpenedEvent(String, Object) use `DataOpenedEvent(Location, Object)` instead
org.scijava.io.event.DataSavedEvent(String, Object) use `DataSavedEvent(Location, Object)` instead
org.scijava.script.DefaultScriptInterpreter(PrefService, ScriptService, ScriptLanguage) Use `DefaultScriptInterpreter(ScriptLanguage)` instead.
org.scijava.search.DefaultSearchAction(String, boolean, Runnable) Search actions may no longer demand that the search results be closed. Use `DefaultSearchAction(String, Runnable)` instead.
org.scijava.io.event.IOEvent(String, Object) use `IOEvent(Location, Object)` instead
org.scijava.script.ScriptFinder(ScriptService) Use `ScriptFinder(Context)` instead.
org.scijava.script.ScriptLanguageIndex()

Deprecated Annotation Type Elements
Annotation Type Element and Description

org.scijava.plugin.Parameter.columns
Replaced by Parameter.style().

Deprecated API

Contents