SNT plugin
PathAndFillManager pathAndFillManager
JList<E> fillList
DefaultListModel<E> listModel
GuiUtils gUtils
double maxThresholdValue
FillManagerUI.State currentState
JTextField manualThresholdInputField
JLabel maxThresholdLabel
JLabel currentThresholdLabel
JLabel cursorPositionLabel
JLabel fillTypeLabel
JLabel statusText
JButton manualThresholdApplyButton
JButton exploredThresholdApplyButton
JButton startFill
JButton saveFill
JButton stopFill
JButton reloadFill
JRadioButton cursorThresholdChoice
JRadioButton manualThresholdChoice
JRadioButton exploredThresholdChoice
JPopupMenu exportFillsMenu
JCheckBox transparentCheckbox
sc.fiji.snt.PathManagerUI.HelpfulJTree tree
SNT plugin
PathAndFillManager pathAndFillManager
SNTTable table
GuiUtils guiUtils
JScrollPane scrollPane
JMenuBar menuBar
JPopupMenu popup
JMenu swcTypeMenu
JMenu tagsMenu
ButtonGroup swcTypeButtonGroup
ColorMenu colorMenu
JMenuItem fitVolumeMenuItem
sc.fiji.snt.PathManagerUI.FitHelper fittingHelper
PathManagerUISearchableBar searchableBar
JMenuBar menuBar
JCheckBox showPathsSelected
JCheckBox showPartsNearby
JCheckBox useSnapWindow
JCheckBox onlyActiveCTposition
JSpinner snapWindowXYsizeSpinner
JSpinner snapWindowZsizeSpinner
JSpinner nearbyFieldSpinner
JButton showOrHidePathList
JButton showOrHideFillList
JMenuItem loadTracesMenuItem
JMenuItem loadSWCMenuItem
JMenuItem loadLabelsMenuItem
JMenuItem saveMenuItem
JMenuItem exportCSVMenuItem
JMenuItem exportAllSWCMenuItem
JMenuItem quitMenuItem
JMenuItem sendToTrakEM2
JLabel statusText
JLabel statusBarText
JButton keepSegment
JButton junkSegment
JButton completePath
JButton rebuildCanvasButton
JCheckBox debugCheckBox
JComboBox<E> searchAlgoChoice
JPanel aStarPanel
JCheckBox aStarCheckBox
SigmaPalette sigmaPalette
SNTCommandFinder commandFinder
JTextArea settingsArea
JPanel sourcePanel
JPanel secLayerPanel
JCheckBox secLayerActivateCheckbox
JRadioButton secLayerBuiltinRadioButton
JRadioButton secLayerExternalRadioButton
JButton secLayerGenerate
JButton secLayerExternalImgOptionsButton
JCheckBox secLayerExternalImgOverlayCheckbox
JMenuItem secLayerExternalImgLoadFlushMenuItem
sc.fiji.snt.SNTUI.ActiveWorker activeWorker
int currentState
SNT plugin
PathAndFillManager pathAndFillManager
GuiUtils guiUtils
PathManagerUI pmUI
FillManagerUI fmUI
Viewer3D recViewer
Frame recViewerFrame
JButton openRecViewer
SciViewSNT sciViewSNT
JButton openSciView
JButton svSyncPathManager
sc.fiji.snt.SNTUI.GuiListener listener
boolean confirmTemporarySegments
boolean finishOnDoubleConfimation
boolean discardOnDoubleCancellation
boolean askUserConfirmation
boolean openingSciView
SigmaPaletteListener sigmaPaletteListener
PathAndFillManager pathAndFillManager
boolean just_near_slices
int eitherSide
Set<E> searchArtists
double nodeSize
int[] transparencies
int backBufferWidth
int backBufferHeight
Graphics2D backBufferGraphics
Image backBufferImage
boolean hasUnsavedData
Collection<E> treeCollection
String metric
double threshold
int maxOntologyDepth
Tree tree
DirectedWeightedGraph graph
String label
Profile profile
ShollStats[] stats
boolean detailedSummary
String title
PrefService prefService
Color current
ColorChangedListener listener
String labelOfHelpActionButton
ActionListener helpActionButtonListener
MouseAdapter helpActionMouseListener
PathManagerUI pmui
GuiUtils guiUtils
boolean subFilteringEnabled
double x_start
double y_start
double z_start
ButtonGroup pathsGroup
JRadioButton useAllPathsCheckbox
JRadioButton useSelectedPathsCheckbox
JButton swcTypesButton
JPopupMenu swcTypesMenu
ArrayList<E> filteredTypes
JLabel filteredTypesWarningLabel
JButton makeShollImageButton
JButton exportProfileButton
JButton drawShollGraphButton
JButton analyzeButton
ButtonGroup axesGroup
JRadioButton normalAxes
JRadioButton semiLogAxes
JRadioButton logLogAxes
ButtonGroup normalizationGroup
JRadioButton noNormalization
JRadioButton normalizationForSphereVolume
String exportPath
int margin
sc.fiji.snt.gui.ShollAnalysisDialog.GraphFrame graphFrame
int numberOfSelectedPaths
int numberOfAllPaths
double sampleSeparation
ArrayList<E> shollPointsAllPaths
ArrayList<E> shollPointsSelectedPaths
PathAndFillManager shollpafm
sc.fiji.snt.gui.ShollAnalysisDialog.ResultsPanel resultsPanel
GuiUtils gUtils
SNT plugin
List<E> _extraButtons
boolean containsCheckboxes
int buttonHeight
float iconHeight
int buttonCount
String statusLabelPlaceholder
String objectDescription
GuiUtils guiUtils
JMenuItem findAndReplaceMenuItem
boolean succeeded
JCheckBox replaceExistingPathsCheckbox
JCheckBox ignoreCalibrationCheckbox
JCheckBox applyOffsetCheckbox
JCheckBox applyScaleCheckbox
String offsetDefault
String scaleDefault
JTextField xOffsetTextField
JTextField yOffsetTextField
JTextField zOffsetTextField
JTextField xScaleTextField
JTextField yScaleTextField
JTextField zScaleTextField
JButton okButton
JButton cancelButton
JButton restoreToDefaultsButton
PaneOwner owner
int plane
double current_x
double current_y
double current_z
boolean draw_crosshairs
String cursorText
String canvasText
Color annotationsColor
boolean waveInteractionsToIJ
boolean waitingForRoiDrawing
boolean cursorLocked
GuiUtils guiUtils
SNTTable table
JCheckBoxMenuItem debugCheckBox
SNTSearchableBar searchableBar
sc.fiji.snt.viewer.Viewer3D.ManagerPanel.ProgressBar progressBar
SNTCommandFinder cmdFinder
com.mxgraph.layout.mxGraphLayout layout
double forceConstant
double minDistance
double maxDistance
double initialTemp
double maxIterations
double radius
Context context
PrefService prefService
com.mxgraph.swing.mxGraphComponent graphComponent
com.mxgraph.swing.mxGraphOutline graphOutline
JTabbedPane libraryPane
com.mxgraph.util.mxUndoManager undoManager
String appTitle
JLabel statusBar
File currentFile
com.mxgraph.swing.handler.mxRubberband rubberband
com.mxgraph.swing.handler.mxKeyboardHandler keyboardHandler
sc.fiji.snt.viewer.geditor.EditorConsole editorConsole
JPanel legendPanel
JSplitPane mainPanel
JSplitPane bottomPanel
sc.fiji.snt.viewer.geditor.EditorToolBar toolbar
boolean animateLayoutChange
JComboBox<E> annotationMetricJCombo
JFormattedTextField annotationThresholdField
JFormattedTextField annotationDepthField
boolean modified
com.mxgraph.util.mxEventSource.mxIEventListener undoHandler
com.mxgraph.util.mxEventSource.mxIEventListener changeTracker
CommandService cmdService
SNTGraphAdapter<V,E extends org.jgrapht.graph.DefaultWeightedEdge> adapter
File saveDir
boolean spaceDown
GraphEditor editor
com.mxgraph.layout.mxGraphLayout layout
com.mxgraph.layout.mxCompactTreeLayout layout
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