| Package | Description |
|---|---|
| sc.fiji.snt |
SNT core classes
|
| sc.fiji.snt.analysis |
Analysis of
Trees. |
| sc.fiji.snt.analysis.graph |
Classes for handling neuronal reconstructions as graphs
|
| sc.fiji.snt.analysis.sholl |
Sholl analysis of Images, pre-sampled data and
Trees. |
| sc.fiji.snt.analysis.sholl.gui |
GUI customizations (image overlays, plots, etc.) required for Sholl Analysis.
|
| sc.fiji.snt.analysis.sholl.math |
Statistical analysis of Sholl data
|
| sc.fiji.snt.analysis.sholl.parsers |
Parsers to retrieve Profiles from multiple sources (2D/3D images, reconstructions, and tables)
|
| sc.fiji.snt.annotation |
Classes handling neuropil annotations and atlases metadata.
|
| sc.fiji.snt.event |
Utilities for TrakEM2 interaction
|
| sc.fiji.snt.filter | |
| sc.fiji.snt.gui |
Customizations and commands for SNT's GUI.
|
| sc.fiji.snt.gui.cmds |
Scijava-based GUIs for SNT built-in commands.
|
| sc.fiji.snt.hyperpanes |
Classes implementing SNT's XY, ZY, and XZ canvases.
|
| sc.fiji.snt.io |
Classes for importing reconstructions into SNT.
|
| sc.fiji.snt.plugin |
SNT add-ons as IJ2 commands
|
| sc.fiji.snt.plugin.ij1 | |
| sc.fiji.snt.tracing | |
| sc.fiji.snt.tracing.artist | |
| sc.fiji.snt.tracing.cost | |
| sc.fiji.snt.tracing.heuristic | |
| sc.fiji.snt.tracing.image | |
| sc.fiji.snt.util |
Miscellaneous SNT utilities, including classes defining reconstruction nodes.
|
| sc.fiji.snt.viewer |
Visualization of reconstructions
|
| sc.fiji.snt.viewer.geditor |
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