Skip navigation links

SNT Javadocs

Packages 
Package Description
sc.fiji.snt
SNT core classes
sc.fiji.snt.analysis
Analysis of Trees.
sc.fiji.snt.analysis.graph
Classes for handling neuronal reconstructions as graphs
sc.fiji.snt.analysis.sholl
Sholl analysis of Images, pre-sampled data and Trees.
sc.fiji.snt.analysis.sholl.gui
GUI customizations (image overlays, plots, etc.) required for Sholl Analysis.
sc.fiji.snt.analysis.sholl.math
Statistical analysis of Sholl data
sc.fiji.snt.analysis.sholl.parsers
Parsers to retrieve Profiles from multiple sources (2D/3D images, reconstructions, and tables)
sc.fiji.snt.annotation
Classes handling neuropil annotations and atlases metadata.
sc.fiji.snt.event
Utilities for TrakEM2 interaction
sc.fiji.snt.filter  
sc.fiji.snt.gui
Customizations and commands for SNT's GUI.
sc.fiji.snt.gui.cmds
Scijava-based GUIs for SNT built-in commands.
sc.fiji.snt.hyperpanes
Classes implementing SNT's XY, ZY, and XZ canvases.
sc.fiji.snt.io
Classes for importing reconstructions into SNT.
sc.fiji.snt.plugin
SNT add-ons as IJ2 commands
sc.fiji.snt.plugin.ij1  
sc.fiji.snt.tracing  
sc.fiji.snt.tracing.artist  
sc.fiji.snt.tracing.cost  
sc.fiji.snt.tracing.heuristic  
sc.fiji.snt.tracing.image  
sc.fiji.snt.util
Miscellaneous SNT utilities, including classes defining reconstruction nodes.
sc.fiji.snt.viewer
Visualization of reconstructions
sc.fiji.snt.viewer.geditor  
Skip navigation links

Copyright © 2018–2021 Morphonets. All rights reserved.