Deprecated List (SNT Javadocs 0-SNAPSHOT API)

Deprecated Classes
Class and Description
sc.fiji.snt.gui.EnhancedGenericDialog
sc.fiji.snt.gui.EnhancedWaitForUserDialog
sc.fiji.snt.plugin.ij1.Sholl_Analysis This IJ1 plugin has now been replaced by its IJ2 counterpart. Kept here for backwards compatibility
sc.fiji.snt.plugin.ij1.Sholl_Utils This IJ1 plugin is no longer needed when using IJ2 commands. Kept here for backwards compatibility
sc.fiji.snt.gui.ShollAnalysisDialog
sc.fiji.snt.gui.ShollAnalysisDialog.ShollPoint
sc.fiji.snt.gui.ShollAnalysisDialog.ShollResults
sc.fiji.snt.plugin.ij1.ShollAnalysisPlugin
sc.fiji.snt.plugin.ij1.ShollOptions

Deprecated Fields
Field and Description

sc.fiji.snt.Path.SWC_END_POINT

sc.fiji.snt.Path.SWC_FORK_POINT

Deprecated Fields
Field and Description
sc.fiji.snt.Path.SWC_END_POINT
sc.fiji.snt.Path.SWC_FORK_POINT

Deprecated Methods
Method and Description
sc.fiji.snt.Path.addAsLinesTo3DViewer(Image3DUniverse, Color3f, ImagePlus)
sc.fiji.snt.Path.addAsLinesTo3DViewer(Image3DUniverse, Color, ImagePlus)
sc.fiji.snt.Path.addDiscsTo3DViewer(Image3DUniverse, Color3f, ImagePlus)
sc.fiji.snt.Path.addDiscsTo3DViewer(Image3DUniverse, Color, ImagePlus)
sc.fiji.snt.Path.addTo3DViewer(Image3DUniverse, Color3f, ImagePlus)
sc.fiji.snt.Path.addTo3DViewer(Image3DUniverse, Color, ImagePlus)
sc.fiji.snt.viewer.Viewer2D.addTree(Tree) Use `Viewer2D.add(Tree)` instead
sc.fiji.snt.viewer.Viewer3D.addTrees(Collection<Tree>, boolean) use `Viewer3D.addTrees(Collection, String)` instead
sc.fiji.snt.plugin.ij1.Sholl_Analysis.analyze2D(int, int, double[], double, int, int, ImagePlus)
sc.fiji.snt.plugin.ij1.Sholl_Analysis.analyze3D(int, int, int, double[], ImagePlus)
sc.fiji.snt.PathAndFillManager.canvasResized()
sc.fiji.snt.PathAndFillManager.contentAdded(Content)
sc.fiji.snt.PathAndFillManager.contentChanged(Content)
sc.fiji.snt.PathAndFillManager.contentRemoved(Content)
sc.fiji.snt.PathAndFillManager.contentSelected(Content)
sc.fiji.snt.analysis.graph.GraphUtils.createGraph(Collection<SWCPoint>, boolean)
sc.fiji.snt.analysis.graph.GraphUtils.createGraph(Tree)
sc.fiji.snt.analysis.graph.GraphUtils.createTree(Graph<SWCPoint, ?>)
sc.fiji.snt.SNTService.demoTree()
sc.fiji.snt.SNTService.demoTreeImage()
sc.fiji.snt.SNT.get3DUniverse()
sc.fiji.snt.plugin.ij1.Sholl_Analysis.getCircumferencePoints(int, int, int)
sc.fiji.snt.SNT.getPaths3DDisplay()
sc.fiji.snt.analysis.graph.GraphUtils.getSimplifiedGraph(DirectedWeightedGraph)
sc.fiji.snt.SNTPrefs.loadStartupPrefs()
sc.fiji.snt.plugin.ij1.Sholl_Utils.makePlotLabel(Plot, String, Color)
sc.fiji.snt.plugin.ij1.Sholl_Utils.markPlotPoint(Plot, double[], Color)
sc.fiji.snt.gui.EnhancedGenericDialog.menuItemTriggeringResources()
sc.fiji.snt.plugin.ij1.Sholl_Utils.sampleImage() Use `ShollUtils.sampleImage()` instead
sc.fiji.snt.SNTPrefs.saveStartupPrefs()
sc.fiji.snt.SNT.setColorImage(ImagePlus)
sc.fiji.snt.hyperpanes.MultiDThreePanesCanvas.setCrosshairs(double, double, double, boolean)
sc.fiji.snt.plugin.ij1.ShollOptions.setNoPlots(boolean)
sc.fiji.snt.plugin.ij1.ShollOptions.setNoTable(boolean)
sc.fiji.snt.SNT.setPaths3DDisplay(int)
sc.fiji.snt.SNT.showCorrespondencesTo(File, Color, double)
sc.fiji.snt.viewer.Viewer2D.showPlot() Use `Viewer2D.show()` instead.
sc.fiji.snt.PathAndFillManager.universeClosed()
sc.fiji.snt.SNT.updateImageContent(int)
sc.fiji.snt.plugin.ij1.Sholl_Utils.version() Use `SNTUtils.VERSION` instead

Deprecated Constructors
Constructor and Description

sc.fiji.snt.analysis.sholl.parsers.ImageParser(ImagePlus)

sc.fiji.snt.analysis.sholl.parsers.ImageParser3D(ImagePlus)

Deprecated API

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