Package sc.fiji.snt.plugin

• Class Summary 

  Class	Description
  AnalyzerCmd	Command for measuring Tree(s).
  BrainAnnotationCmd	Command to perform distribution analysis of BrainAnnotations on an annotated Tree.
  ChooseDataset
  GraphAdapterMapperCmd
  GroupAnalyzerCmd	Command for Comparing Groups of Tree(s).
  LocalThicknessCmd	Convenience command for running Fiji's "Local Thickness" plugin from SNT
  MultiTreeMapperCmd	Command for color coding trees according to their properties using TreeColorMapper with options to display result in Viewer2D and Viewer3D
  PathAnalyzerCmd	Command for measuring Paths in isolation.
  PathMatcherCmd	Command for matching Paths across time-points (time-lapse analysis).
  PathOrderAnalysisCmd	Command to perform Path Ordering analysis on a Tree.
  PathSpineAnalysisCmd	Command for obtaining plots pertaining to spine/varicosity counts
  PathTimeAnalysisCmd	Command for obtaining 'time-profiles' of Paths (time-lapse analysis).
  PlotterCmd	Implements Reconstruction Plotter, a command wrapper for interactively plotting trees using Viewer2D
  ROIExporterCmd	Command providing a GUI for RoiConverter and allowing export of Paths to the IJ1 ROI Manager.
  ShollAnalysisBulkTreeCmd	A modified version of ShollAnalysisTreeCmd for Bulk Sholl Analysis.
  ShollAnalysisImgCmd	Implements the Analyze:Sholl:Sholl Analysis (From Image)...
  ShollAnalysisPrefsCmd	Implements the "Sholl Options" command
  ShollAnalysisTreeCmd	Implements SNT's commands for Sholl Analysis of Trees.
  SkeletonConverterCmd	Command providing a GUI for SkeletonConverter
  SkeletonizerCmd	Convenience command for converting Paths into skeleton images
  SpineExtractorCmd	Command for obtaining spine/varicosity counts from multi-point ROIs
  StrahlerCmd	Command to perform Horton-Strahler analysis on a Tree.
  TreeMapperCmd	Command for color coding trees according to their properties using TreeColorMapper with options to display result in Viewer2D and Viewer3D

Package sc.fiji.snt.plugin Description

Author:

Tiago Ferreira