ShollAnalysisImgCmd (SNT Javadocs 0-SNAPSHOT API)

java.lang.Object
- org.scijava.module.AbstractModule
- - org.scijava.module.DefaultMutableModule
  - - org.scijava.command.DynamicCommand
    - - sc.fiji.snt.plugin.ShollAnalysisImgCmd

All Implemented Interfaces:

Runnable, Cancelable, Command, Interactive, Contextual, Module, MutableModule, SciJavaPlugin
```
public class ShollAnalysisImgCmd
extends DynamicCommand
implements Interactive, Cancelable
```
Implements the Analyze:Sholl:Sholl Analysis (From Image)...

Author:

Tiago Ferreira

Field Summary

Fields
Modifier and Type Field and Description

protected static String EMPTY_LABEL

protected static String HEADER_HTML

protected static String HEADER_TOOLTIP
- Fields inherited from class org.scijava.command.DynamicCommand
  moduleService, pluginService

Fields
Modifier and Type	Field and Description
`protected static String`	`EMPTY_LABEL`
`protected static String`	`HEADER_HTML`
`protected static String`	`HEADER_TOOLTIP`

Constructor Summary

Constructors
Constructor and Description

ShollAnalysisImgCmd()

Constructors
Constructor and Description
`ShollAnalysisImgCmd()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`protected void`	`annotationsDescriptionChanged()`
`protected void`	`endRadiusChanged()`
`protected Profile`	`getProfile()`
`protected void`	`init()`
`protected void`	`lutChoiceChanged()`
`protected void`	`normalizerDescriptionChanged()`
`protected void`	`nSpansChanged()`
`protected void`	`nSpansIntChoiceChanged()`
`void`	`onEvent(DataDeletedEvent evt)`
`protected void`	`overlayShells()`
`protected void`	`polynomialChoiceChanged()`
`protected void`	`polynomialDegreeChanged()`
`void`	`preview()`
`protected void`	`primaryBranchesChanged()`
`protected void`	`primaryBranchesChoiceChanged()`
`void`	`run()`
`protected void`	`runAnalysis()`
`protected void`	`setAnalysisScope()`
`protected void`	`setCenterFromROI()`
`protected void`	`setProfile(Profile profile)`
`protected void`	`startRadiusStepSizeChanged()`
`protected boolean`	`updateHyperStackPosition()`

Methods inherited from class org.scijava.command.DynamicCommand
cancel, context, getCancelReason, getContext, getInfo, getInput, getOutput, isCanceled, saveInputs, setContext, setInput, setOutput, uncancel

Methods inherited from class org.scijava.module.AbstractModule
cancel, getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.Cancelable
cancel, getCancelReason, isCanceled

Methods inherited from interface org.scijava.module.MutableModule
addInput, addInput, addOutput, addOutput, removeInput, removeOutput

Methods inherited from interface org.scijava.module.Module
cancel, getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, isResolved, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

Field Detail

HEADER_HTML

protected static final String HEADER_HTML

See Also:: Constant Field Values

HEADER_TOOLTIP

protected static final String HEADER_TOOLTIP

See Also:: Constant Field Values

EMPTY_LABEL

protected static final String EMPTY_LABEL

See Also:: Constant Field Values

Constructor Detail
- ShollAnalysisImgCmd
```
public ShollAnalysisImgCmd()
```

Method Detail

onEvent

public void onEvent(DataDeletedEvent evt)

run
```
public void run()
```
Specified by:

run in interface Runnable

Specified by:

run in interface MutableModule

preview
```
public void preview()
```
Specified by:

preview in interface Module

Overrides:

preview in class AbstractModule

runAnalysis

protected void runAnalysis()
                    throws InterruptedException

Throws:: InterruptedException

setProfile

protected void setProfile(Profile profile)

getProfile
```
protected Profile getProfile()
```

init
```
protected void init()
```

setAnalysisScope
```
protected void setAnalysisScope()
```

updateHyperStackPosition

protected boolean updateHyperStackPosition()

setCenterFromROI
```
protected void setCenterFromROI()
```

startRadiusStepSizeChanged

protected void startRadiusStepSizeChanged()

endRadiusChanged
```
protected void endRadiusChanged()
```

nSpansChanged
```
protected void nSpansChanged()
```

nSpansIntChoiceChanged

protected void nSpansIntChoiceChanged()

polynomialChoiceChanged

protected void polynomialChoiceChanged()

normalizerDescriptionChanged

protected void normalizerDescriptionChanged()

annotationsDescriptionChanged

protected void annotationsDescriptionChanged()

polynomialDegreeChanged

protected void polynomialDegreeChanged()

primaryBranchesChoiceChanged

protected void primaryBranchesChoiceChanged()

primaryBranchesChanged

protected void primaryBranchesChanged()

lutChoiceChanged
```
protected void lutChoiceChanged()
```

overlayShells
```
protected void overlayShells()
```

Class ShollAnalysisImgCmd

Field Summary

Fields inherited from class org.scijava.command.DynamicCommand

Constructor Summary

Method Summary

Methods inherited from class org.scijava.command.DynamicCommand

Methods inherited from class org.scijava.module.AbstractModule

Methods inherited from class java.lang.Object

Methods inherited from interface org.scijava.Cancelable

Methods inherited from interface org.scijava.module.MutableModule

Methods inherited from interface org.scijava.module.Module

Field Detail

HEADER_HTML

HEADER_TOOLTIP

EMPTY_LABEL

Constructor Detail

ShollAnalysisImgCmd

Method Detail

onEvent

run

preview

runAnalysis

setProfile

getProfile

init

setAnalysisScope

updateHyperStackPosition

setCenterFromROI

startRadiusStepSizeChanged

endRadiusChanged

nSpansChanged

nSpansIntChoiceChanged

polynomialChoiceChanged

normalizerDescriptionChanged

annotationsDescriptionChanged

polynomialDegreeChanged

primaryBranchesChoiceChanged

primaryBranchesChanged

lutChoiceChanged

overlayShells