Serialized Form (SCIFIO Javadocs 0-SNAPSHOT API)

Package io.scif.bf
- Class io.scif.bf.BioFormatsFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - omexmlService
```
OMEXMLService omexmlService
```
    - reader
```
IFormatReader reader
```
    - metadataStore
```
MetadataStore metadataStore
```
    - formatName
```
String formatName
```
    - colorTables16
```
Map<K,V> colorTables16
```
    - colorTables8
```
Map<K,V> colorTables8
```
    - colorTableXML
```
Map<K,V> colorTableXML
```
Package io.scif.formats
- Class io.scif.formats.APNGFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - actl
```
APNGFormat.ACTLChunk actl
```
    - ihdr
```
APNGFormat.IHDRChunk ihdr
```
    - plte
```
APNGFormat.PLTEChunk plte
```
    - iend
```
APNGFormat.IENDChunk iend
```
    - separateDefault
```
boolean separateDefault
```
    - signed
```
boolean signed
```
    - littleEndian
```
boolean littleEndian
```
- Class io.scif.formats.AVIFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - offsets
```
List<E> offsets
```
    - lengths
```
List<E> lengths
```
    - bmpBitsPerPixel
```
short bmpBitsPerPixel
```
    - bmpCompression
```
int bmpCompression
```
    - bmpScanLineSize
```
int bmpScanLineSize
```
    - bmpColorsUsed
```
int bmpColorsUsed
```
    - bmpWidth
```
int bmpWidth
```
    - bytesPerPlane
```
int bytesPerPlane
```
    - lut
```
ColorTable lut
```
    - lastPlane
```
ByteArrayPlane lastPlane
```
    - lastPlaneIndex
```
long lastPlaneIndex
```
    - lastDims
```
int[] lastDims
```
- Class io.scif.formats.BMPFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - palette
```
ColorTable8 palette
```
    - compression
```
int compression
```
    - global
```
long global
```
    - invertY
```
boolean invertY
```
- Class io.scif.formats.DICOMFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - lut8
```
ColorTable8 lut8
```
    - lut16
```
ColorTable16 lut16
```
    - offsets
```
long[] offsets
```
    - isJP2K
```
boolean isJP2K
```
    - isJPEG
```
boolean isJPEG
```
    - isRLE
```
boolean isRLE
```
    - isDeflate
```
boolean isDeflate
```
    - oddLocations
```
boolean oddLocations
```
    - maxPixelValue
```
int maxPixelValue
```
    - imagesPerFile
```
int imagesPerFile
```
    - rescaleSlope
```
double rescaleSlope
```
    - rescaleIntercept
```
double rescaleIntercept
```
    - inverted
```
boolean inverted
```
    - pixelSizeX
```
String pixelSizeX
```
    - pixelSizeY
```
String pixelSizeY
```
    - pixelSizeZ
```
Double pixelSizeZ
```
    - date
```
String date
```
    - time
```
String time
```
    - imageType
```
String imageType
```
    - originalDate
```
String originalDate
```
    - originalTime
```
String originalTime
```
    - originalInstance
```
String originalInstance
```
    - originalSeries
```
int originalSeries
```
- Class io.scif.formats.EPSFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - start
```
int start
```
    - binary
```
boolean binary
```
    - isTiff
```
boolean isTiff
```
    - ifds
```
IFDList ifds
```
- Class io.scif.formats.FITSFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - pixelOffset
```
long pixelOffset
```
- Class io.scif.formats.GIFFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - cachedTable
```
ColorTable8 cachedTable
```
    - interlace
```
boolean interlace
```
    - ix
```
int ix
```
    - iy
```
int iy
```
    - iw
```
int iw
```
    - ih
```
int ih
```
    - blockSize
```
int blockSize
```
    - dispose
```
int dispose
```
    - lastDispose
```
int lastDispose
```
    - transparency
```
boolean transparency
```
    - transIndex
```
int transIndex
```
- Class io.scif.formats.ICSFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - versionTwo
```
boolean versionTwo
```
    - offset
```
long offset
```
    - hasInstrumentData
```
boolean hasInstrumentData
```
    - storedRGB
```
boolean storedRGB
```
    - icsId
```
String icsId
```
    - idsId
```
String idsId
```
    - keyValPairs
```
Map<K,V> keyValPairs
```
    - icsLocation
```
Location icsLocation
```
    - idsLocation
```
Location idsLocation
```
- Class io.scif.formats.ImageIOFormat.Metadata extends AbstractMetadata implements Serializable
- Class io.scif.formats.JPEG2000Format.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - pixelsOffset
```
long pixelsOffset
```
    - lastIndex
```
JPEG2000Format.Index lastIndex
```
    - resolutionLevels
```
Integer resolutionLevels
```
- Class io.scif.formats.JPEGFormat.Metadata extends ImageIOFormat.Metadata implements Serializable
- Class io.scif.formats.JPEGTileFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - decoder
```
JPEGTileDecoder decoder
```
- Class io.scif.formats.KontronFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - width
```
long width
```
    - height
```
long height
```
- Class io.scif.formats.MicromanagerFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - positions
```
List<E> positions
```
- Class io.scif.formats.MinimalTIFFFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - ifds
```
IFDList ifds
```
    - thumbnailIFDs
```
IFDList thumbnailIFDs
```
    - subResolutionIFDs
```
List<E> subResolutionIFDs
```
    - tiffParser
```
TiffParser tiffParser
```
    - equalStrips
```
boolean equalStrips
```
    - use64Bit
```
boolean use64Bit
```
    - lastPlane
```
long lastPlane
```
    - noSubresolutions
```
boolean noSubresolutions
```
    - resolutionLevels
```
Integer resolutionLevels
```
    - j2kCodecOptions
```
JPEG2000CodecOptions j2kCodecOptions
```
- Class io.scif.formats.MNGFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - datasetInfo
```
io.scif.formats.MNGFormat.MNGDatasetInfo datasetInfo
```
    - isJNG
```
boolean isJNG
```
- Class io.scif.formats.NRRDFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - dataFile
```
Location dataFile
```
    - encoding
```
String encoding
```
    - offset
```
long offset
```
    - helper
```
Reader helper
```
    - pixelSizes
```
String[] pixelSizes
```
    - lookForCompanion
```
boolean lookForCompanion
```
    - initializeHelper
```
boolean initializeHelper
```
- Class io.scif.formats.OBFFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - currentInflatedFrame
```
io.scif.formats.OBFFormat.Frame currentInflatedFrame
```
    - inflater
```
Inflater inflater
```
    - stacks
```
List<E> stacks
```
- Class io.scif.formats.PCXFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - offset
```
long offset
```
    - bytesPerLine
```
int bytesPerLine
```
    - nColorPlanes
```
int nColorPlanes
```
    - lut
```
ColorTable8 lut
```
- Class io.scif.formats.PGMFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - rawBits
```
boolean rawBits
```
    - offset
```
long offset
```
- Class io.scif.formats.ScancoISQFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - patientIndex
```
int patientIndex
```
    - scannerId
```
int scannerId
```
    - creationDate
```
LocalDate creationDate
```
    - width
```
int width
```
    - height
```
int height
```
    - slices
```
int slices
```
    - physicalWidth
```
int physicalWidth
```
    - physicalHeight
```
int physicalHeight
```
    - physicalDepth
```
int physicalDepth
```
    - sliceThickness
```
int sliceThickness
```
    - sliceSpacing
```
int sliceSpacing
```
    - firstSlicePosition
```
int firstSlicePosition
```
    - minDataValue
```
int minDataValue
```
    - maxDataValue
```
int maxDataValue
```
    - muScaling
```
int muScaling
```
    - samples
```
int samples
```
    - projections
```
int projections
```
    - scanDistance
```
int scanDistance
```
    - scannerType
```
int scannerType
```
    - samplingTime
```
int samplingTime
```
    - measurementIndex
```
int measurementIndex
```
    - site
```
int site
```
    - referenceLine
```
int referenceLine
```
    - reconstructionAlgorithm
```
int reconstructionAlgorithm
```
    - patientName
```
String patientName
```
    - energy
```
int energy
```
    - intensity
```
int intensity
```
    - dataOffset
```
int dataOffset
```
    - voxelWidth
```
double voxelWidth
```
    - voxelHeight
```
double voxelHeight
```
    - voxelDepth
```
double voxelDepth
```
    - sliceBytes
```
int sliceBytes
```
- Class io.scif.formats.StratecPQCTFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - height
```
short height
```
    - width
```
short width
```
    - slices
```
short slices
```
    - sliceStart
```
double sliceStart
```
    - sliceDistance
```
double sliceDistance
```
    - patientName
```
String patientName
```
    - patientNumber
```
int patientNumber
```
    - patientAge
```
int patientAge
```
    - patientMeasurementNumber
```
short patientMeasurementNumber
```
    - patientBirthDate
```
Date patientBirthDate
```
    - patientId
```
String patientId
```
    - measurementDate
```
Date measurementDate
```
    - measurementInfo
```
String measurementInfo
```
    - resolution
```
double resolution
```
    - topEdge
```
short topEdge
```
    - leftEdge
```
short leftEdge
```
    - deviceName
```
String deviceName
```
    - objectSize
```
double objectSize
```
- Class io.scif.formats.TestImgFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - axes
```
String[] axes
```
    - lengths
```
long[] lengths
```
    - scales
```
double[] scales
```
    - units
```
String[] units
```
    - planarDims
```
int planarDims
```
    - interleavedDims
```
int interleavedDims
```
    - thumbSizeX
```
int thumbSizeX
```
    - thumbSizeY
```
int thumbSizeY
```
    - pixelType
```
String pixelType
```
    - indexed
```
boolean indexed
```
    - falseColor
```
boolean falseColor
```
    - little
```
boolean little
```
    - metadataComplete
```
boolean metadataComplete
```
    - thumbnail
```
boolean thumbnail
```
    - orderCertain
```
boolean orderCertain
```
    - lutLength
```
int lutLength
```
    - scaleFactor
```
int scaleFactor
```
    - images
```
int images
```
    - luts
```
ColorTable[][] luts
```
    - valueToIndex
```
int[][] valueToIndex
```
- Class io.scif.formats.TIFFFormat.Metadata extends MinimalTIFFFormat.Metadata implements Serializable
  - Serialized Fields
    - populateImageMetadata
```
boolean populateImageMetadata
```
    - creationDate
```
String creationDate
```
    - experimenterFirstName
```
String experimenterFirstName
```
    - experimenterLastName
```
String experimenterLastName
```
    - experimenterEmail
```
String experimenterEmail
```
    - imageDescription
```
String imageDescription
```
    - companionFile
```
Location companionFile
```
    - description
```
String description
```
    - calibrationUnit
```
String calibrationUnit
```
    - timeIncrement
```
Double timeIncrement
```
    - xOrigin
```
Integer xOrigin
```
    - yOrigin
```
Integer yOrigin
```
    - lut
```
byte[][] lut
```
    - colorTable
```
List<E> colorTable
```
- Class io.scif.formats.TIFFJAIFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - r
```
ReflectedUniverse r
```
    - numPages
```
int numPages
```
Package io.scif.jj2000.j2k
- Class io.scif.jj2000.j2k.NoNextElementException extends RuntimeException implements Serializable
- Class io.scif.jj2000.j2k.NotImplementedError extends Error implements Serializable
Package io.scif.jj2000.j2k.codestream
- Class io.scif.jj2000.j2k.codestream.CorruptedCodestreamException extends IOException implements Serializable
Package io.scif.jj2000.j2k.util
- Class io.scif.jj2000.j2k.util.StringFormatException extends IllegalArgumentException implements Serializable
Package io.scif.lifesci
- Class io.scif.lifesci.SDTFormat.Metadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - info
```
SDTInfo info
```
      Object containing SDT header information.
    - binOffset
```
int binOffset
```
      Offset to binary data.
    - timeBins
```
int timeBins
```
      Number of time bins in lifetime histogram.
    - channels
```
int channels
```
      Number of spectral channels.
    - mergeIntensity
```
boolean mergeIntensity
```
      Whether to combine lifetime bins into single intensity image planes.
    - timeBase
```
double timeBase
```
Package io.scif.media.imageioimpl.common
- Class io.scif.media.imageioimpl.common.BogusColorSpace extends ColorSpace implements Serializable
- Class io.scif.media.imageioimpl.common.InvertedCMYKColorSpace extends ColorSpace implements Serializable
  - Serialized Fields
    - csRGB
```
ColorSpace csRGB
```
- Class io.scif.media.imageioimpl.common.SimpleCMYKColorSpace extends ColorSpace implements Serializable
  - Serialized Fields
    - csRGB
```
ColorSpace csRGB
```
Package io.scif.ome
- Class io.scif.ome.OMEMetadata extends AbstractMetadata implements Serializable
  - Serialized Fields
    - root
```
OMEXMLMetadata root
```
      OME core
    - omexmlService
```
OMEXMLService omexmlService
```

Serialized Form

Package io.scif.bf

Class io.scif.bf.BioFormatsFormat.Metadata extends AbstractMetadata implements Serializable

Serialized Fields

omexmlService

reader

metadataStore

formatName

colorTables16

colorTables8

colorTableXML

Package io.scif.formats

Class io.scif.formats.APNGFormat.Metadata extends AbstractMetadata implements Serializable

Serialized Fields

actl

ihdr

plte

iend

separateDefault

signed

littleEndian

Class io.scif.formats.AVIFormat.Metadata extends AbstractMetadata implements Serializable

Serialized Fields

offsets

lengths

bmpBitsPerPixel

bmpCompression

bmpScanLineSize

bmpColorsUsed

bmpWidth

bytesPerPlane

lut

lastPlane

lastPlaneIndex

lastDims

Class io.scif.formats.BMPFormat.Metadata extends AbstractMetadata implements Serializable

Serialized Fields

palette

compression

global

invertY

Class io.scif.formats.DICOMFormat.Metadata extends AbstractMetadata implements Serializable

Serialized Fields

lut8

lut16

offsets

isJP2K

isJPEG

isRLE

isDeflate

oddLocations

maxPixelValue

imagesPerFile

rescaleSlope

rescaleIntercept

inverted

pixelSizeX

pixelSizeY

pixelSizeZ

date

time

imageType

originalDate

originalTime

originalInstance

originalSeries

Class io.scif.formats.EPSFormat.Metadata extends AbstractMetadata implements Serializable

Serialized Fields

start

binary

isTiff

ifds

Class io.scif.formats.FITSFormat.Metadata extends AbstractMetadata implements Serializable

Serialized Fields

pixelOffset

Class io.scif.formats.GIFFormat.Metadata extends AbstractMetadata implements Serializable

Serialized Fields

cachedTable

interlace

ix