OMEXMLService (SCIFIO Javadocs 0-SNAPSHOT API)

All Superinterfaces:

Comparable<Prioritized>, Contextual, Disposable, HasPluginInfo, Identifiable, Initializable, Locatable, Logged, Prioritized, RichPlugin, SCIFIOService, SciJavaPlugin, Service, Versioned

All Known Implementing Classes:

DefaultOMEXMLService
```
public interface OMEXMLService
extends SCIFIOService
```
SCIFIO service wrapper for OMEXMLService.

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method and Description
`void`	`addMetadataOnly(OMEXMLMetadata omexmlMeta, int image)`
`MetadataRetrieve`	`asRetrieve(MetadataStore meta)`
`MetadataStore`	`asStore(MetadataRetrieve meta)`
`void`	`convertMetadata(MetadataRetrieve src, MetadataStore dest)`
`void`	`convertMetadata(String xml, MetadataStore dest)`
`OMEXMLMetadata`	`createOMEXMLMetadata()`
`OMEXMLMetadata`	`createOMEXMLMetadata(String xml)`
`OMEXMLMetadata`	`createOMEXMLMetadata(String xml, String version)`
`Object`	`createOMEXMLRoot(String xml)`
`String`	`getLatestVersion()`
`OMEXMLMetadata`	`getOMEMetadata(MetadataRetrieve src)`
`String`	`getOMEXML(MetadataRetrieve src)`
`String`	`getOMEXMLVersion(Object o)`
`Hashtable<String,Object>`	`getOriginalMetadata(OMEXMLMetadata omexmlMeta)`
`boolean`	`isEqual(OMEXMLMetadata src1, OMEXMLMetadata src2)`
`boolean`	`isOMEXMLMetadata(Object o)`
`boolean`	`isOMEXMLRoot(Object o)`
`void`	`populateOriginalMetadata(OMEMetadata omexmlMeta, Hashtable<String,Object> metadata)`
`void`	`populateOriginalMetadata(OMEMetadata omexmlMeta, String key, String value)`
`void`	`removeBinData(OMEXMLMetadata omexmlMeta)`
`void`	`removeChannels(OMEXMLMetadata omexmlMeta, int image, int sizeC)`
`String`	`transformToLatestVersion(String xml)`
`boolean`	`validateOMEXML(String xml)`
`boolean`	`validateOMEXML(String xml, boolean pixelsHack)`

Methods inherited from interface org.scijava.service.Service
initialize, registerEventHandlers

Methods inherited from interface org.scijava.plugin.RichPlugin
getIdentifier, log

Methods inherited from interface org.scijava.Contextual
context, getContext, setContext

Methods inherited from interface org.scijava.Prioritized
compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.HasPluginInfo
getInfo, setInfo

Methods inherited from interface org.scijava.Locatable
getLocation

Methods inherited from interface org.scijava.Versioned
getVersion

Methods inherited from interface org.scijava.Disposable
dispose

Method Detail

getLatestVersion
```
String getLatestVersion()
```
See Also:

OMEXMLService.getLatestVersion()

transformToLatestVersion
```
String transformToLatestVersion(String xml)
                         throws loci.common.services.ServiceException
```
Throws:

loci.common.services.ServiceException

See Also:

OMEXMLService.transformToLatestVersion(String)

createOMEXMLMetadata

OMEXMLMetadata createOMEXMLMetadata()
                             throws loci.common.services.ServiceException

Throws:: loci.common.services.ServiceException
See Also:: OMEXMLService.createOMEXMLMetadata()

createOMEXMLMetadata

OMEXMLMetadata createOMEXMLMetadata(String xml)
                             throws loci.common.services.ServiceException

Throws:: loci.common.services.ServiceException
See Also:: OMEXMLService.createOMEXMLMetadata()

createOMEXMLMetadata

OMEXMLMetadata createOMEXMLMetadata(String xml,
                                    String version)
                             throws loci.common.services.ServiceException

Throws:: loci.common.services.ServiceException
See Also:: OMEXMLService.createOMEXMLMetadata(String, String)

createOMEXMLRoot
```
Object createOMEXMLRoot(String xml)
                 throws loci.common.services.ServiceException
```
Throws:

loci.common.services.ServiceException

See Also:

OMEXMLService.createOMEXMLRoot(String)

isOMEXMLMetadata
```
boolean isOMEXMLMetadata(Object o)
```
See Also:

OMEXMLService.isOMEXMLMetadata(Object)

isOMEXMLRoot
```
boolean isOMEXMLRoot(Object o)
```
See Also:

OMEXMLService.isOMEXMLRoot(Object)

getOMEXMLVersion
```
String getOMEXMLVersion(Object o)
```
See Also:

OMEXMLService.getOMEXMLVersion(Object)

getOMEMetadata

OMEXMLMetadata getOMEMetadata(MetadataRetrieve src)
                       throws loci.common.services.ServiceException

Throws:: loci.common.services.ServiceException
See Also:: OMEXMLService.getOMEMetadata(MetadataRetrieve)

getOMEXML
```
String getOMEXML(MetadataRetrieve src)
          throws loci.common.services.ServiceException
```
Throws:

loci.common.services.ServiceException

See Also:

OMEXMLService.getOMEXML(MetadataRetrieve)

validateOMEXML
```
boolean validateOMEXML(String xml)
```
See Also:

OMEXMLService.validateOMEXML(String)

validateOMEXML

boolean validateOMEXML(String xml,
                       boolean pixelsHack)

See Also:: OMEXMLService.validateOMEXML(String, boolean)

populateOriginalMetadata

void populateOriginalMetadata(OMEMetadata omexmlMeta,
                              Hashtable<String,Object> metadata)

See Also:: OMEXMLService.populateOriginalMetadata(OMEXMLMetadata, Hashtable)

populateOriginalMetadata

void populateOriginalMetadata(OMEMetadata omexmlMeta,
                              String key,
                              String value)

See Also:: OMEXMLService.populateOriginalMetadata(OMEXMLMetadata, String, String)

getOriginalMetadata
```
Hashtable<String,Object> getOriginalMetadata(OMEXMLMetadata omexmlMeta)
```
See Also:

OMEXMLService.getOriginalMetadata(OMEXMLMetadata)

convertMetadata

void convertMetadata(String xml,
                     MetadataStore dest)
              throws loci.common.services.ServiceException

Throws:: loci.common.services.ServiceException
See Also:: OMEXMLService.convertMetadata(String, MetadataStore)

convertMetadata

void convertMetadata(MetadataRetrieve src,
                     MetadataStore dest)

See Also:: OMEXMLService.convertMetadata(MetadataRetrieve, MetadataStore)

removeBinData
```
void removeBinData(OMEXMLMetadata omexmlMeta)
```
See Also:

OMEXMLService.removeBinData(OMEXMLMetadata)

removeChannels

void removeChannels(OMEXMLMetadata omexmlMeta,
                    int image,
                    int sizeC)

See Also:: OMEXMLService.removeChannels(OMEXMLMetadata, int, int)

addMetadataOnly

void addMetadataOnly(OMEXMLMetadata omexmlMeta,
                     int image)

See Also:: OMEXMLService.addMetadataOnly(OMEXMLMetadata, int)

isEqual

boolean isEqual(OMEXMLMetadata src1,
                OMEXMLMetadata src2)

See Also:: OMEXMLService.isEqual(OMEXMLMetadata, OMEXMLMetadata)

asStore
```
MetadataStore asStore(MetadataRetrieve meta)
```
See Also:

OMEXMLService.asStore(MetadataRetrieve)

asRetrieve
```
MetadataRetrieve asRetrieve(MetadataStore meta)
```
See Also:

OMEXMLService.asRetrieve(MetadataStore)

Interface OMEXMLService

Method Summary

Methods inherited from interface org.scijava.service.Service

Methods inherited from interface org.scijava.plugin.RichPlugin

Methods inherited from interface org.scijava.Contextual

Methods inherited from interface org.scijava.Prioritized

Methods inherited from interface org.scijava.plugin.HasPluginInfo

Methods inherited from interface org.scijava.Locatable

Methods inherited from interface org.scijava.Versioned

Methods inherited from interface org.scijava.Disposable

Method Detail

getLatestVersion

transformToLatestVersion

createOMEXMLMetadata

createOMEXMLMetadata

createOMEXMLMetadata

createOMEXMLRoot

isOMEXMLMetadata

isOMEXMLRoot

getOMEXMLVersion

getOMEMetadata

getOMEXML

validateOMEXML

validateOMEXML

populateOriginalMetadata

populateOriginalMetadata

getOriginalMetadata

convertMetadata

convertMetadata

removeBinData

removeChannels

addMetadataOnly

isEqual

asStore

asRetrieve