Package org.micromanager.data

This package contains classes related to the storage and internal representation of image data and metadata.

See: Description

Interface Summary

Interface	Description
Annotation	A Annotation is a container for mutable information that is associated with a Datastore.
Coords	The multi-dimensional coordinate of a 2D image within a dataset.
Coords.Builder
Coords.CoordsBuilder
DataManager	This class provides general utility functions for working with Micro-Manager data.
DataProvider	Read-only access to multi-dimensional image data.
DataProviderHasNewImageEvent	This class signifies that an image has been added to a DataProvider.
DataProviderHasNewNameEvent	This event posts when the DataStore gets a new name, i.e.
DataProviderHasNewSummaryMetadataEvent	This class signifies that new summary metadata has been set for a DataProvider.
Datastore	Read/write access to multi-dimensional image data.
DatastoreClosingEvent	This class signifies that a Datastore's close() method has been called, and thus that all resources associated with that Datastore, and references to the Datastore, should be removed so that it can be garbage collected.
DatastoreFrozenEvent	This class signifies that a Datastore has become frozen and can no longer be written to (but read actions may still occur).
Image	A 2-dimensional pixel plane with associated multi-dimensional coordinates and metadata.
ImageDeletedEvent	This class signifies that an image has been deleted in the Datastore.
ImageJConverter	This class provides access to utility methods for interoperating with ImageJ.
ImageOverwrittenEvent	This class signifies that an image has been overwritten in the Datastore.
Metadata	This interface defines the metadata for Images.
Metadata.Builder
Metadata.MetadataBuilder	Deprecated Use Metadata.Builder instead
NewPipelineEvent	This class signifies that the configuration of the application pipeline has changed, giving entities that use that pipeline an opportunity to make a new copy of it (by invoking DataManager.copyApplicationPipeline()).
Pipeline	Pipelines are used to apply a sequence of Processors to Images prior to those images being inserted into a Datastore.
Processor	Processors manipulate images before they are added to a Datastore.
ProcessorConfigurator	ProcessorPluginConfigurators are used to generate the PropertyMaps needed to set up a ProcessorFactory.
ProcessorContext	A ProcessorContext is an object that allows Processors to communicate with the ProcessorPipeline.
ProcessorFactory	A ProcessorFactory is an object that generates new DataProcessors.
ProcessorPlugin	A ProcessorPlugin is the "root" class for creating Processors, which are used to modify images as they are collected by Micro-Manager.
RewritableDatastore	RewritableDatastores are Datastores that allow images and SummaryMetadata to be deleted or overwritten after they have been inserted.
RewritableStorage	This interface is for Storage entities that allow the overwriting and deletion of Images and SummaryMetadata, as per RewritableDatastore.
Storage	Storages are responsible for providing image data to Datastores when requested.
SummaryMetadata	This class defines the summary metadata that applies to all images in a dataset.
SummaryMetadata.Builder
SummaryMetadata.SummaryMetadataBuilder	Deprecated - Use SummaryMetadata.Builder instead

Class Summary

Class	Description
Coordinates

Enum Summary

Enum	Description
Datastore.SaveMode	The file format to save to.

Exception Summary

Exception	Description
DatastoreFrozenException	An unchecked exception thrown when an attempt is made to modify a Datastore that has been frozen.
DatastoreRewriteException	An unchecked exception thrown when an attempt is made to overwrite data in a non-rewritable datastore.
ImagesDifferInSizeException	An unchecked exception thrown when an image is put into a datastore that already has an image of a different size and that does not support images differing in size (currently non of the MM Datastores support images differing in size.
PipelineErrorException	This exception is thrown when Pipeline.insertImage() has been called after an error occurred in one of the Processors in the Pipeline.

Package org.micromanager.data Description

This package contains classes related to the storage and internal representation of image data and metadata. The primary classes for this package are the Datastore and DataManager classes; the former stores sets of images and the latter provides utilities for creating and arranging images. Event classes in this package are specific to a single Datastore, and can be subscribed to via the Datastore.registerForEvents() method.