org.micromanager.data

Interface ImageJConverter

public interface ImageJConverter

This class provides access to utility methods for interoperating with ImageJ. It can be accessed via the DataManager.ij() method or the DataManager.getImageJConverter() method.

Method Summary

Modifier and Type	Method and Description
Image	createImage(ij.process.ImageProcessor processor, Coords coords, Metadata metadata) Create a new Image based on the provided ImageProcessor and metadata.
ij.process.ImageProcessor	createProcessor(Image image) Create an ImageProcessor whose image pixel data is derived from the provided Image.
ij.process.ImageProcessor	createProcessorFromComponent(Image image, int component) Create an ImageProcessor whose image pixel data is derived from a single component of the provided Image.

Method Detail

createProcessor

ij.process.ImageProcessor createProcessor(Image image)

Create an ImageProcessor whose image pixel data is derived from the provided Image.

Parameters:

image - Micro-Manager Image object

Returns:

ImageJ ImageProcessor with reference to input Image pixel data

createProcessorFromComponent

ij.process.ImageProcessor createProcessorFromComponent(Image image,
                                                       int component)

Create an ImageProcessor whose image pixel data is derived from a single component of the provided Image. Use this to e.g. extract out just the red component of an RGB image.

Parameters:

image - Micro-Manager Image object

component - Component number of the image to produce a processor for

Returns:

ImageJ ImageProcessor whose pixels are based on a single component of the input Image.

createImage

Image createImage(ij.process.ImageProcessor processor,
                  Coords coords,
                  Metadata metadata)

Create a new Image based on the provided ImageProcessor and metadata.

Parameters:

processor - ImageProcessor whose pixel data will form the data of the result image.

coords - Coordinates for the new image.

metadata - Metadata to use to create the new Image.

Returns:

an Image based on the pixel data in the processor and the given coordinates and metadata.