Metadata

```
public interface Metadata
```
This interface defines the metadata for Images. Note that Metadatas are immutable; if you need to modify one, create a new one using a MetadataBuilder. All fields of the Metadata that are not explicitly initialized will default to null. You are not expected to implement this interface; it is here to describe how you can interact with Metadata created by Micro-Manager itself. If you need to get a MetadataBuilder, call the getMetadataBuilder() method of the DataManager class, or use the copy() method of an existing Metadata. This class uses a Builder pattern. Please see https://micro-manager.org/wiki/Using_Builders for more information.

Nested Class Summary

Nested Classes
Modifier and Type Interface and Description

static interface Metadata.Builder

static interface Metadata.MetadataBuilder
Deprecated.
Use Metadata.Builder instead

Nested Classes
Modifier and Type	Interface and Description
`static interface`	`Metadata.Builder`
`static interface`	`Metadata.MetadataBuilder` Deprecated. Use `Metadata.Builder` instead

Method Summary

All Methods Instance Methods Abstract Methods Deprecated Methods
Modifier and Type	Method and Description
`Metadata.MetadataBuilder`	`copy()` Deprecated. Use the appropriate of the following: `copyBuilderPreservingUUID()`, `copyBuilderWithNewUUID()`, `copyBuilderRemovingUUID()`. This method is equivalent to `copyBuilderPreservingUUID`.
`Metadata.Builder`	`copyBuilderPreservingUUID()` Return a builder with the same content, preserving the image UUID.
`Metadata.Builder`	`copyBuilderRemovingUUID()` Return a builder with the same content but removing the image UUID.
`Metadata.Builder`	`copyBuilderWithNewUUID()` Return a builder with the same content, assigning a new image UUID.
`java.lang.Integer`	`getBinning()` The binning mode of the camera for this image
`java.lang.Integer`	`getBitDepth()` The number of bits used to represent each pixel (e.g.
`java.lang.String`	`getCamera()` The name of the camera for this image
`java.lang.Double`	`getElapsedTimeMs()` Deprecated. - use Double `getElapsedTimeMs(double)` instead
`double`	`getElapsedTimeMs(double defaultValue)` Time in milliseconds since the start of the given data acquisition at which the image was received by Micro-Manager.
`java.lang.Double`	`getExposureMs()` How long of an exposure was used to collect this image
`java.lang.String`	`getFileName()` The name of the file from which the image was loaded, if applicable.
`java.lang.Long`	`getImageNumber()` The sequence number of this image, for sequence acquisitions
`java.lang.Double`	`getPixelAspect()` The aspect ratio of the pixels in this image, as a Y/X ratio (e.g.
`java.awt.geom.AffineTransform`	`getPixelSizeAffine()` Geometric relation between stage movement (in microns) and pixels
`java.lang.Double`	`getPixelSizeUm()` How much of the sample, in microns, a single pixel of the camera sees
`java.lang.String`	`getPositionName()` Deprecated. Use `getPositionName(java.lang.String)` instead
`java.lang.String`	`getPositionName(java.lang.String defaultPosName)` Any name attached to the stage position at which this image was acquired
`java.lang.String`	`getReceivedTime()` The time at which the Java layer of Micro-Manager receives the image from the Core, expressed as a date-time string.
`java.awt.Rectangle`	`getROI()` The ROI of the camera when acquiring this image
`PropertyMap`	`getScopeData()` Any information provided by Micro-Manager or its device adapters that is relevant to this image.
`PropertyMap`	`getUserData()` Arbitrary additional metadata added by third-party code
`java.util.UUID`	`getUUID()` A unique identifier for this specific image.
`java.lang.Double`	`getXPositionUm()` The X stage position of the sample for this image
`java.lang.Double`	`getYPositionUm()` The Y stage position of the sample for this image
`java.lang.Double`	`getZPositionUm()` The Z stage position of the sample for this image
`boolean`	`hasElapsedTimeMs()` Whether or not this image has metadata indicating the time elapsed since the start of the acquisition
`boolean`	`hasPositionName()`

- Method Detail
  - copyBuilderPreservingUUID
```
Metadata.Builder copyBuilderPreservingUUID()
```
    Return a builder with the same content, preserving the image UUID. The UUID is a unique identifier for the image. Micro-Manager uses this field to determine if two images are truly different, so if you copy this Metadata instance to apply to a new image, use another builder
    
    Returns:
    
    Builder, useful for command chaining
  - copyBuilderWithNewUUID
```
Metadata.Builder copyBuilderWithNewUUID()
```
    Return a builder with the same content, assigning a new image UUID. The UUID is a unique identifier for the image. Micro-Manager uses this field to determine if two images are truly different, so if you copy this Metadata instance to apply to a new image, use this builder
    
    Returns:
    
    Builder, useful for command chaining
  - copyBuilderRemovingUUID
```
Metadata.Builder copyBuilderRemovingUUID()
```
    Return a builder with the same content but removing the image UUID. The UUID is a unique identifier for the image. Micro-Manager uses this field to determine if two images are truly different.
    
    Returns:
    
    Builder, useful for command chaining
  - copy
```
@Deprecated
Metadata.MetadataBuilder copy()
```
    Deprecated. Use the appropriate of the following: copyBuilderPreservingUUID(), copyBuilderWithNewUUID(), copyBuilderRemovingUUID(). This method is equivalent to copyBuilderPreservingUUID.
  - getElapsedTimeMs
```
@Deprecated
java.lang.Double getElapsedTimeMs()
```
    Deprecated. - use Double getElapsedTimeMs(double) instead
    
    The time at which Micro-Manager received this image, in milliseconds. There can be substantial jitter in this value; as a rule of thumb it should not be assumed to be accurate to better than 20ms or so.
    
    Returns:
    
    Milliseconds since the start of the acquisition up to the moment this image was received by Micro-Manager
  - hasElapsedTimeMs
```
boolean hasElapsedTimeMs()
```
    Whether or not this image has metadata indicating the time elapsed since the start of the acquisition
    
    Returns:
    
    true if the image metadata has a field indicating the elapsed time
  - getElapsedTimeMs
```
double getElapsedTimeMs(double defaultValue)
```
    Time in milliseconds since the start of the given data acquisition at which the image was received by Micro-Manager. This is a proxy for the time at which the exposure happened, but there is considerable jitter so it should not be assumed to be accurate to more than ~20 ms.
    
    Parameters:
    
    defaultValue - - value returned of the image metadata did not contain information about the elapsed time
    
    Returns:
    
    Milliseconds since the start of the acquisition up to the moment this image was received by Micro-Manager
  - getExposureMs
```
java.lang.Double getExposureMs()
```
    How long of an exposure was used to collect this image
    
    Returns:
    
    Camera exposure (in ms) of this image
  - getPixelAspect
```
java.lang.Double getPixelAspect()
```
    The aspect ratio of the pixels in this image, as a Y/X ratio (e.g. 2.0 means that the pixels are twice as tall as they are wide).
    
    Returns:
    
    Pixels aspect ratio
  - getPixelSizeUm
```
java.lang.Double getPixelSizeUm()
```
    How much of the sample, in microns, a single pixel of the camera sees
    
    Returns:
    
    Sample pixel size in microns
  - getPixelSizeAffine
```
java.awt.geom.AffineTransform getPixelSizeAffine()
```
    Geometric relation between stage movement (in microns) and pixels
    
    Returns:
    
    Affine transform describing geometric relation between stage movement (in microns) and camera (in pixels)
  - getXPositionUm
```
java.lang.Double getXPositionUm()
```
    The X stage position of the sample for this image
    
    Returns:
    
    X position of the default XY stage for this image
  - getYPositionUm
```
java.lang.Double getYPositionUm()
```
    The Y stage position of the sample for this image
    
    Returns:
    
    Y position of the default XY stage for this image
  - getZPositionUm
```
java.lang.Double getZPositionUm()
```
    The Z stage position of the sample for this image
    
    Returns:
    
    Position of the default focus stage for this image
  - getBinning
```
java.lang.Integer getBinning()
```
    The binning mode of the camera for this image
    
    Returns:
    
    binning mode of the camera for this image
  - getBitDepth
```
java.lang.Integer getBitDepth()
```
    The number of bits used to represent each pixel (e.g. 12-bit means that pixel values range from 0 to 4095)
    
    Returns:
    
    Number of bits used to represent each pixel
  - getImageNumber
```
java.lang.Long getImageNumber()
```
    The sequence number of this image, for sequence acquisitions
    
    Returns:
    
    sequence number of this image
  - getScopeData
```
PropertyMap getScopeData()
```
    Any information provided by Micro-Manager or its device adapters that is relevant to this image. This includes a copy of the Core's knowledge of every device property at the time of image acquisition. It is possible that the values in this object are not up to date, as devices are allowed to change their settings without notifying the Core, and the Core does not manually update its copy of device settings after each image, for performance reasons.
    
    Returns:
    
    Miscellaneous medatada provided by the microscope.
  - getUserData
```
PropertyMap getUserData()
```
    Arbitrary additional metadata added by third-party code
    
    Returns:
    
    arbitrary additional metadata added by third-party code
  - getROI
```
java.awt.Rectangle getROI()
```
    The ROI of the camera when acquiring this image
    
    Returns:
    
    Camera ROI
  - getCamera
```
java.lang.String getCamera()
```
    The name of the camera for this image
    
    Returns:
    
    Camera name
  - getPositionName
```
@Deprecated
java.lang.String getPositionName()
```
    Deprecated. Use getPositionName(java.lang.String) instead
    
    Any name attached to the stage position at which this image was acquired
    
    Returns:
    
    Name of the position at which this image was acquired
  - hasPositionName
```
boolean hasPositionName()
```
  - getPositionName
```
java.lang.String getPositionName(java.lang.String defaultPosName)
```
    Any name attached to the stage position at which this image was acquired
    
    Parameters:
    
    defaultPosName - Will be returned if no name is provided by the metadata
    
    Returns:
    
    Name of the position at which this image was acquired
  - getReceivedTime
```
java.lang.String getReceivedTime()
```
    The time at which the Java layer of Micro-Manager receives the image from the Core, expressed as a date-time string. Depending on the parameters for your acquisition, there may be significant and/or variable delay between the time the image was actually acquired by the camera and the time in this field. It will always be at least a little behind.
    
    Returns:
    
    Time at which this image was received by Micro-Manager
  - getUUID
```
java.util.UUID getUUID()
```
    A unique identifier for this specific image. Micro-Manager uses this field to determine if two images are truly different, so if you copy this Metadata instance to apply to a new image, you should make certain to set a new UUID for it (which you can conveniently do using MetadataBuilder.uuid() with no parameter).
    
    Returns:
    
    Unique identifier
  - getFileName
```
java.lang.String getFileName()
```
    The name of the file from which the image was loaded, if applicable.
    
    Returns:
    
    filename.

Interface Metadata

Nested Class Summary

Method Summary

Method Detail

copyBuilderPreservingUUID

copyBuilderWithNewUUID

copyBuilderRemovingUUID

copy

getElapsedTimeMs

hasElapsedTimeMs

getElapsedTimeMs

getExposureMs

getPixelAspect

getPixelSizeUm

getPixelSizeAffine

getXPositionUm

getYPositionUm

getZPositionUm

getBinning

getBitDepth

getImageNumber

getScopeData

getUserData

getROI

getCamera

getPositionName

hasPositionName

getPositionName

getReceivedTime

getUUID

getFileName