| Package | Description |
|---|---|
| org.micromanager.data |
This package contains classes related to the storage and internal
representation of image data and metadata.
|
| org.micromanager.display |
This package contains classes related to Micro-Manager's display windows,
which are used to show image data and metadata to the user.
|
| Modifier and Type | Method and Description |
|---|---|
Coords |
Coords.Builder.build() |
Coords |
Coords.CoordsBuilder.build() |
Coords |
Coords.copyRemovingAxes(java.lang.String... axes)
Removes the axes provided as varargs from this Coord
|
Coords |
Coords.copyRetainingAxes(java.lang.String... axes)
Name of this function is very unclear.
|
Coords |
DataManager.createCoords(java.lang.String def)
Deprecated.
use of Strings for Coords is discouraged
|
static Coords |
Coordinates.fromPropertyMap(PropertyMap pmap) |
Coords |
DataProviderHasNewImageEvent.getCoords() |
Coords |
Image.getCoords()
Retrieve the Coords of this Image.
|
Coords |
SummaryMetadata.getIntendedDimensions()
The expected number of images along each axis that were to be collected.
|
Coords |
DataProvider.getMaxIndices()
Deprecated.
Use
DataProvider.getNextIndex(String axis) instead |
Coords |
Storage.getMaxIndices()
Return a Coords that provides the maximum index along all available axes.
|
| Modifier and Type | Method and Description |
|---|---|
java.lang.Iterable<Coords> |
DataProvider.getUnorderedImageCoords() |
java.lang.Iterable<Coords> |
Storage.getUnorderedImageCoords()
Return an Iterable that provides access to all image coordinates in the
Storage, in arbitrary order.
|
| Modifier and Type | Method and Description |
|---|---|
Image |
DataManager.convertTaggedImage(mmcorej.TaggedImage tagged,
Coords coords,
Metadata metadata)
Given a TaggedImage input, output an Image based on the TaggedImage,
but with the Coords and/or Metadata optionally overridden.
|
Image |
Image.copyAtCoords(Coords coords)
Generate a copy of this Image, except with different coordinates.
|
Image |
Image.copyWith(Coords coords,
Metadata metadata)
Generate a copy of this Image, except with different coordinates and
metadata.
|
Image |
ImageJConverter.createImage(ij.process.ImageProcessor processor,
Coords coords,
Metadata metadata)
Create a new Image based on the provided ImageProcessor and metadata.
|
Image |
DataManager.createImage(java.lang.Object pixels,
int width,
int height,
int bytesPerPixel,
int numComponents,
Coords coords,
Metadata metadata)
Generate a new Image with the provided pixel data, rules for interpreting
that pixel data, coordinates, and metadata.
|
void |
RewritableStorage.deleteImage(Coords coords)
Delete an image from the Storage.
|
void |
RewritableDatastore.deleteImage(Coords coords)
Delete an image from the Datastore.
|
void |
RewritableDatastore.deleteImagesMatching(Coords coords)
Delete all images from the Datastore whose coordinates match the provided
Coords object, which may be underspecified.
|
Image |
DataProvider.getImage(Coords coords)
Returns the image at the given postion
|
Image |
Storage.getImage(Coords coords)
Retrieve the Image located at the specified coordinates.
|
PropertyMap |
Annotation.getImageAnnotation(Coords coords)
Return a PropertyMap of information stored by this Annotation related to
the image at the specified coordinates.
|
java.util.List<Image> |
DataProvider.getImagesIgnoringAxes(Coords coords,
java.lang.String... ignoreTheseAxes)
Returns a list of image in the DataProvider's collection that have
identical coords after removing the given axes from both source and target.
|
java.util.List<Image> |
Storage.getImagesIgnoringAxes(Coords coords,
java.lang.String... ignoreTheseAxes)
Retrieve a list of images with Coords identical to the given Coords instance,
except for the axes listed in the exception list.
|
java.util.List<Image> |
DataProvider.getImagesMatching(Coords coords)
Deprecated.
- instead use getImagesIgnoringAxes
|
java.util.List<Image> |
Storage.getImagesMatching(Coords coords)
Retrieve a list of all images whose Coords match the given incomplete
Coords instance.
|
boolean |
DataProvider.hasImage(Coords coords) |
boolean |
Storage.hasImage(Coords coords)
Returns whether or not an image exists at the specified coordinates.
|
SummaryMetadata.Builder |
SummaryMetadata.Builder.intendedDimensions(Coords intendedDimensions) |
SummaryMetadata.SummaryMetadataBuilder |
SummaryMetadata.SummaryMetadataBuilder.intendedDimensions(Coords intendedDimensions)
Deprecated.
|
boolean |
Coords.matches(Coords alt)
Deprecated.
Use equality (after removing specific axes) instead
|
void |
Annotation.setImageAnnotation(Coords coords,
PropertyMap newData)
Replace the data this Annotation has for the specified Image with the
provided PropertyMap.
|
Image |
DataManager.wrapImage(java.lang.Object pixels,
int width,
int height,
int bytesPerPixel,
int numComponents,
Coords coords,
Metadata metadata)
Generate a new Image with the provided pixel data, rules for interpreting
that pixel data, coordinates, and metadata.
|
| Modifier and Type | Method and Description |
|---|---|
Coords |
DataViewer.getDisplayPosition()
Get the coordinates for the currently displayed images.
|
Coords |
DisplayPositionChangedEvent.getDisplayPosition() |
Coords |
AbstractDataViewer.getDisplayPosition()
Implements
getDisplayPosition. |
Coords |
DisplayPositionChangedEvent.getPreviousDisplayPosition() |
protected abstract Coords |
AbstractDataViewer.handleDisplayPosition(Coords position) |
| Modifier and Type | Method and Description |
|---|---|
boolean |
DataViewer.compareAndSetDisplayPosition(Coords originalPosition,
Coords newPosition)
Set the display position only if the current position is the expected one.
|
boolean |
AbstractDataViewer.compareAndSetDisplayPosition(Coords oldPosition,
Coords newPosition) |
boolean |
DataViewer.compareAndSetDisplayPosition(Coords originalPosition,
Coords newPosition,
boolean forceRedisplay)
Set the display position only if the current position is the expected one.
|
boolean |
AbstractDataViewer.compareAndSetDisplayPosition(Coords oldPosition,
Coords newPosition,
boolean forceRedisplay)
Implements
compareAndSetDisplayPosition. |
protected abstract Coords |
AbstractDataViewer.handleDisplayPosition(Coords position) |
void |
DataViewer.setDisplayedImageTo(Coords position)
Deprecated.
use
DataViewer.setDisplayPosition(Coords) instead |
void |
AbstractDataViewer.setDisplayedImageTo(Coords coords)
Deprecated.
user code should call
setDisplayPosition |
void |
DataViewer.setDisplayPosition(Coords position)
Display the images at the specified coordinates in the data provider.
|
void |
AbstractDataViewer.setDisplayPosition(Coords position) |
void |
DataViewer.setDisplayPosition(Coords position,
boolean forceRedisplay)
Display the images at the specified coordinates in the data provider.
|
void |
AbstractDataViewer.setDisplayPosition(Coords position,
boolean forceRedisplay)
Implements
setDisplayPosition. |