| Package | Description |
|---|---|
| loci.visbio.data | |
| loci.visbio.ext | |
| loci.visbio.overlays | |
| loci.visbio.state | |
| loci.visbio.view |
| Modifier and Type | Class and Description |
|---|---|
class |
ArbitrarySlice
A transform for slicing a stack of images in 3D.
|
class |
CollapseTransform
CollapseTransform converts a dimensional axis into a series of range
components.
|
class |
DataSampling
DataSampling is a resampling of another transform.
|
class |
Dataset
A Dataset object encompasses a multidimensional biological image series.
|
class |
DataTransform
DataTransform is the superclass of all data transform types.
|
class |
ImageTransform
ImageTransform is a DataTransform superclass that provides image data.
|
class |
ProjectionTransform
ProjectionTransform performs a maximum intensity projection across a given
dimensional axis.
|
class |
SpectralTransform
SpectralTransform is a mapping of spectral bands onto an RGB or grayscale
color space, as specified by the user with weighted sliders.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SpectralTransform.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
void |
ProjectionTransform.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
void |
Dataset.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
void |
DataTransform.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
void |
DataSampling.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
void |
CollapseTransform.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
void |
ArbitrarySlice.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
boolean |
SpectralTransform.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
ProjectionTransform.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
Dataset.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
DataTransform.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
DataSampling.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
CollapseTransform.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
ArbitrarySlice.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
SpectralTransform.matches(Dynamic dyn)
Tests whether two dynamic objects are equivalent.
|
boolean |
ProjectionTransform.matches(Dynamic dyn)
Tests whether two dynamic objects are equivalent.
|
boolean |
Dataset.matches(Dynamic dyn)
Tests whether two dynamic objects have matching states.
|
boolean |
DataTransform.matches(Dynamic dyn)
Tests whether two dynamic objects are equivalent.
|
boolean |
DataSampling.matches(Dynamic dyn)
Tests whether two dynamic objects are equivalent.
|
boolean |
CollapseTransform.matches(Dynamic dyn)
Tests whether two dynamic objects are equivalent.
|
boolean |
ArbitrarySlice.matches(Dynamic dyn)
Tests whether two dynamic objects are equivalent.
|
| Modifier and Type | Class and Description |
|---|---|
class |
ExternalFunction
ExternalFunction is an abstract transform that calls some form of external
function.
|
class |
ExternalProgram
ExternalProgram is a transform that uses system calls to an external program
to evaluate a function, using stdin and stdout for binary data transfer.
|
class |
MatlabFunction
MatlabFunction executes a MATLAB script or function on a data object.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ExternalFunction.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
boolean |
ExternalFunction.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
ExternalFunction.matches(Dynamic dyn)
Tests whether two dynamic objects are equivalent.
|
| Modifier and Type | Class and Description |
|---|---|
class |
OverlayTransform
A set of overlays on top another transform.
|
| Modifier and Type | Method and Description |
|---|---|
void |
OverlayTransform.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
boolean |
OverlayTransform.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
OverlayTransform.matches(Dynamic dyn)
Tests whether two dynamic objects are equivalent.
|
| Modifier and Type | Method and Description |
|---|---|
void |
Dynamic.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
boolean |
Dynamic.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
Dynamic.matches(Dynamic dyn)
Tests whether two dynamic objects are equivalent.
|
| Modifier and Type | Class and Description |
|---|---|
class |
DisplayPosition
DisplayPosition represents an orientation of VisAD display.
|
class |
DisplayWindow
DisplayWindow is a window containing a 2D or 3D VisAD display and associated
controls.
|
class |
StackLink
Represents a link between a data transform and a display that produces an
image stack.
|
class |
TransformLink
Represents a link between a data transform and a display that produces a
single image.
|
| Modifier and Type | Method and Description |
|---|---|
void |
TransformLink.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
void |
StackLink.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
void |
DisplayWindow.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
void |
DisplayPosition.initState(Dynamic dyn)
Modifies this object's state to match that of the given object.
|
boolean |
TransformLink.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
StackLink.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
DisplayWindow.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
DisplayPosition.isCompatible(Dynamic dyn)
Tests whether the given dynamic object can be used as an argument to
initState, for initializing this dynamic object.
|
boolean |
TransformLink.matches(Dynamic dyn)
Tests whether two dynamic objects are equivalent.
|
boolean |
StackLink.matches(Dynamic dyn)
Tests whether two dynamic objects are equivalent.
|
boolean |
DisplayWindow.matches(Dynamic dyn)
Tests whether two dynamic objects are equivalent.
|
boolean |
DisplayPosition.matches(Dynamic dyn)
Tests whether two dynamic objects have matching states.
|
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