Uses of Interface net.imglib2.type.numeric.IntegerType (ImgLib2 Javadocs 0-SNAPSHOT API)

Packages that use IntegerType
Package	Description
net.imglib2.algorithm.hough
net.imglib2.algorithm.labeling
net.imglib2.algorithm.math.abstractions
net.imglib2.algorithm.stats
net.imglib2.algorithm.util.unionfind
net.imglib2.histogram
net.imglib2.labeling
net.imglib2.roi.labeling
net.imglib2.test
net.imglib2.type.logic
net.imglib2.type.numeric
net.imglib2.type.numeric.integer
net.imglib2.util
net.imglib2.view

Uses of IntegerType in net.imglib2.algorithm.hough

Methods in net.imglib2.algorithm.hough with type parameters of type IntegerType
Modifier and Type	Method and Description
`static <T extends IntegerType<T>> List<Point>`	HoughTransforms.`pickLinePeaks(RandomAccessibleInterval<T> voteSpace, long threshold)` Pick vote space peaks with a `LocalExtrema`.
`static <T extends Comparable<T>,U extends IntegerType<U>> void`	HoughTransforms.`voteLines(RandomAccessibleInterval<T> input, RandomAccessibleInterval<U> votespace)` Runs a Hough Line Tranform on an image and populates the vote space parameter with the results.
`static <T extends Comparable<T>,U extends IntegerType<U>> void`	HoughTransforms.`voteLines(RandomAccessibleInterval<T> input, RandomAccessibleInterval<U> votespace, int nTheta)` Runs a Hough Line Tranform on an image and populates the vote space parameter with the results.
`static <T extends Comparable<T>,U extends IntegerType<U>> void`	HoughTransforms.`voteLines(RandomAccessibleInterval<T> input, RandomAccessibleInterval<U> votespace, int nTheta, int nRho)` Runs a Hough Line Tranform on an image and populates the vote space parameter with the results.
`static <T,U extends IntegerType<U>> void`	HoughTransforms.`voteLines(RandomAccessibleInterval<T> input, RandomAccessibleInterval<U> votespace, int nTheta, int nRho, Predicate<T> filter)` Runs a Hough Line Tranform on an image and populates the vote space parameter with the results.
`static <T extends Comparable<T>,U extends IntegerType<U>> void`	HoughTransforms.`voteLines(RandomAccessibleInterval<T> input, RandomAccessibleInterval<U> votespace, int nTheta, int nRho, T threshold)` Runs a Hough Line Tranform on an image and populates the vote space parameter with the results.

Uses of IntegerType in net.imglib2.algorithm.labeling

Methods in net.imglib2.algorithm.labeling with type parameters of type IntegerType
Modifier and Type	Method and Description
`static <B extends BooleanType<B>,L extends IntegerType<L>> void`	ConnectedComponentAnalysis.`connectedComponents(RandomAccessibleInterval<B> mask, RandomAccessibleInterval<L> labeling)` Implementation of connected component analysis that uses `IntArrayRankedUnionFind` to find sets of pixels that are connected with respect to a 4-neighborhood (`DiamondShape`) or the generalization for higher dimenions over a binary mask.
`static <B extends BooleanType<B>,L extends IntegerType<L>> void`	ConnectedComponentAnalysis.`connectedComponents(RandomAccessibleInterval<B> mask, RandomAccessibleInterval<L> labeling, Shape shape)` Implementation of connected component analysis that uses `IntArrayRankedUnionFind` to find sets of pixels that are connected with respect to a neighborhood (`shape`) over a binary mask.
`static <B extends BooleanType<B>,L extends IntegerType<L>> void`	ConnectedComponentAnalysis.`connectedComponents(RandomAccessibleInterval<B> mask, RandomAccessibleInterval<L> labeling, Shape shape, LongFunction<UnionFind> unionFindFactory, ToLongBiFunction<Localizable,L> idForPixel, LongUnaryOperator idForSet)` Implementation of connected component analysis that uses `UnionFind` to find sets of pixels that are connected with respect to a neighborhood (`shape`) over a binary mask.
`static <B extends BooleanType<B>,C extends RealComposite<B>,L extends IntegerType<L>> void`	ConnectedComponentAnalysis.`connectedComponentsOnAffinities(RandomAccessible<C> affinities, long[][] affinityOffsets, RandomAccessibleInterval<L> labeling, UnionFind uf, long firstIndex)` Connected components on a regular arbitrary boolean affinity graph.
`static <B extends BooleanType<B>,C extends RealComposite<B>,L extends IntegerType<L>> void`	ConnectedComponentAnalysis.`connectedComponentsOnAffinities(RandomAccessible<C> affinities, long[][] affinityOffsets, RandomAccessibleInterval<L> labeling, UnionFind uf, ToLongBiFunction<Localizable,L> id, LongUnaryOperator idForSet)` Connected components on a regular arbitrary boolean affinity graph.
`static <T extends IntegerType<T>,L,I extends IntegerType<I>> void`	ConnectedComponents.`labelAllConnectedComponents(RandomAccessible<T> input, ImgLabeling<L,I> labeling, Iterator<L> labelGenerator, ConnectedComponents.StructuringElement se)` Label all connected components in the given input image.
`static <T extends IntegerType<T>,L,I extends IntegerType<I>> void`	ConnectedComponents.`labelAllConnectedComponents(RandomAccessible<T> input, ImgLabeling<L,I> labeling, Iterator<L> labelGenerator, ConnectedComponents.StructuringElement se)` Label all connected components in the given input image.
`static <T extends IntegerType<T>,L,I extends IntegerType<I>> void`	ConnectedComponents.`labelAllConnectedComponents(RandomAccessible<T> input, ImgLabeling<L,I> labeling, Iterator<L> labelGenerator, ConnectedComponents.StructuringElement se, ExecutorService service)` Label all connected components in the given input image.
`static <T extends IntegerType<T>,L,I extends IntegerType<I>> void`	ConnectedComponents.`labelAllConnectedComponents(RandomAccessible<T> input, ImgLabeling<L,I> labeling, Iterator<L> labelGenerator, ConnectedComponents.StructuringElement se, ExecutorService service)` Label all connected components in the given input image.
`static <T extends IntegerType<T>,L extends IntegerType<L>> int`	ConnectedComponents.`labelAllConnectedComponents(RandomAccessible<T> input, RandomAccessibleInterval<L> output, ConnectedComponents.StructuringElement se)` "Label" all connected components in the given input image.
`static <T extends IntegerType<T>,L extends IntegerType<L>> int`	ConnectedComponents.`labelAllConnectedComponents(RandomAccessible<T> input, RandomAccessibleInterval<L> output, ConnectedComponents.StructuringElement se)` "Label" all connected components in the given input image.
`static <T extends IntegerType<T>,L extends IntegerType<L>> int`	ConnectedComponents.`labelAllConnectedComponents(RandomAccessible<T> input, RandomAccessibleInterval<L> output, ConnectedComponents.StructuringElement se, ExecutorService service)` "Label" all connected components in the given input image.
`static <T extends IntegerType<T>,L extends IntegerType<L>> int`	ConnectedComponents.`labelAllConnectedComponents(RandomAccessible<T> input, RandomAccessibleInterval<L> output, ConnectedComponents.StructuringElement se, ExecutorService service)` "Label" all connected components in the given input image.

Uses of IntegerType in net.imglib2.algorithm.math.abstractions

Methods in net.imglib2.algorithm.math.abstractions with type parameters of type IntegerType
Modifier and Type	Method and Description
`static <I extends IntegerType<I>,O extends IntegerType<O>> Converter<I,O>`	Util.`genericIntegerTypeConverter()`
`static <I extends IntegerType<I>,O extends IntegerType<O>> Converter<I,O>`	Util.`genericIntegerTypeConverter()`

Uses of IntegerType in net.imglib2.algorithm.stats

Classes in net.imglib2.algorithm.stats with type parameters of type IntegerType
Modifier and Type	Class and Description
`class`	`IntBinMapper<T extends IntegerType<T>>` A HistogramBinMapper over IntegerTypes, using the values themselves as the histogram bin centers.

Uses of IntegerType in net.imglib2.algorithm.util.unionfind

Methods in net.imglib2.algorithm.util.unionfind with type parameters of type IntegerType
Modifier and Type	Method and Description
`static <B extends BooleanType<B>,L extends IntegerType<L>> void`	UnionFind.`relabel(RandomAccessibleInterval<B> mask, RandomAccessibleInterval<L> labeling, UnionFind unionFind, ToLongBiFunction<Localizable,L> idForPixel, LongUnaryOperator idForSet)` Relabel all mask pixels into the representative id of their containing sets as defined by `unionFind`.
`default <L extends IntegerType<L>> void`	UnionFind.`relabel(RandomAccessibleInterval<L> labeling)` Relabel all pixels into the representative id of their containing sets as defined by `unionFind`.
`default <B extends BooleanType<B>,L extends IntegerType<L>> void`	UnionFind.`relabel(RandomAccessibleInterval<L> labeling, ToLongBiFunction<Localizable,L> idForPixel, LongUnaryOperator idForSet)` Relabel all pixels into the representative id of their containing sets as defined by `unionFind`.

Uses of IntegerType in net.imglib2.histogram

Classes in net.imglib2.histogram with type parameters of type IntegerType
Modifier and Type	Class and Description
`class`	`Integer1dBinMapper<T extends IntegerType<T>>` Maps integer values into a 1-d set of bins.

Methods in net.imglib2.histogram with type parameters of type IntegerType
Modifier and Type	Method and Description
`static <K extends IntegerType<K>> HistogramNd<K>`	Integer1dBinMapper.`histogramNd(long[] minVals, long[] numBins, boolean[] tailBins)` This is a convenience method for creating a `HistogramNd` from inputs that describe a set of integer 1-d based bin mappers.

Uses of IntegerType in net.imglib2.labeling

Classes in net.imglib2.labeling with type parameters of type IntegerType
Modifier and Type	Class and Description
`class`	`LabelingConvertedCursor<I extends IntegerType<I>,T extends Comparable<T>>` Deprecated.
`class`	`LabelingConvertedRandomAccess<I extends IntegerType<I>,T extends Comparable<T>>` Deprecated.
`class`	`NativeImgLabeling<T extends Comparable<T>,I extends IntegerType<I>>` Deprecated.

Fields in net.imglib2.labeling declared as IntegerType
Modifier and Type	Field and Description
`protected IntegerType<?>`	LabelingType.`type` Deprecated.

Methods in net.imglib2.labeling that return IntegerType
Modifier and Type	Method and Description
`IntegerType<?>`	LabelingType.`getIndex()` Deprecated.

Constructors in net.imglib2.labeling with parameters of type IntegerType
Constructor and Description
`LabelingMapping(IntegerType<?> value)` Deprecated.
`LabelingType(IntegerType<?> type, LabelingMapping<T> mapping)` Deprecated.
`LabelingType(IntegerType<?> type, LabelingMapping<T> mapping, long[] generation)` Deprecated. Constructor for mirroring state with another labeling

Uses of IntegerType in net.imglib2.roi.labeling

Classes in net.imglib2.roi.labeling with type parameters of type IntegerType
Modifier and Type	Class and Description
`class`	`ImgLabeling<T,I extends IntegerType<I>>` A labeling backed by a `image` of integer indices.

Fields in net.imglib2.roi.labeling declared as IntegerType
Modifier and Type	Field and Description
`protected IntegerType<?>`	LabelingType.`type`

Methods in net.imglib2.roi.labeling with type parameters of type IntegerType
Modifier and Type	Method and Description
`static <T,I extends IntegerType<I>> ImgLabeling<T,I>`	ImgLabeling.`fromImageAndLabels(RandomAccessibleInterval<I> img, List<T> labels)` Creates a non empty ImgLabeling, from an index image and a list of labels.
`static <T,I extends IntegerType<I>> ImgLabeling<T,I>`	ImgLabeling.`fromImageAndLabelSets(RandomAccessibleInterval<I> img, List<Set<T>> labelSets)` Creates a non empty ImgLabeling, from an index image and a list of label sets.
`static <T,I extends IntegerType<I>> Set<I>`	Labelings.`getOccurringPixelSets(ImgLabeling<T,I> img)` Return a `Set` of occurring pixel values in the `ImgLabeling` index image.
`static <T,I extends IntegerType<I>> boolean`	Labelings.`hasIntersectingLabels(ImgLabeling<T,I> img)` Check if the image labeling `img` has intersecting labels.
`static <T,U,I extends IntegerType<I>> ImgLabeling<U,I>`	Labelings.`remapLabels(ImgLabeling<T,I> labeling, Function<T,U> function)` Create a new `ImgLabeling` from an input labeling, with the labels transformed according to the provided `Function`.
`static <T,U,I extends IntegerType<I>> ImgLabeling<U,I>`	Labelings.`remapLabels(ImgLabeling<T,I> labeling, Map<T,U> mapping)` Create a new `ImgLabeling` from an input labeling, with the labels transformed according to the provided `Map`.

Methods in net.imglib2.roi.labeling that return IntegerType
Modifier and Type	Method and Description
`IntegerType<?>`	LabelingType.`getIndex()`

Constructors in net.imglib2.roi.labeling with parameters of type IntegerType
Constructor and Description
`LabelingMapping(IntegerType<?> indexType)` Create a new `LabelingMapping` that maps label sets to the given integral `indexType`.
`LabelingType(IntegerType<?> type, LabelingMapping<T> mapping, LabelingType.ModCount modCount)` Constructor for mirroring state with another labeling

Uses of IntegerType in net.imglib2.test

Method parameters in net.imglib2.test with type arguments of type IntegerType
Modifier and Type	Method and Description
`static void`	ImgLib2Assert.`assertImageEqualsIntegerType(RandomAccessibleInterval<? extends IntegerType<?>> expected, RandomAccessibleInterval<? extends IntegerType<?>> actual)` Throws an AssertionError, if the content or intervals of the two images differ.
`static void`	ImgLib2Assert.`assertImageEqualsIntegerType(RandomAccessibleInterval<? extends IntegerType<?>> expected, RandomAccessibleInterval<? extends IntegerType<?>> actual)` Throws an AssertionError, if the content or intervals of the two images differ.

Uses of IntegerType in net.imglib2.type.logic

Classes in net.imglib2.type.logic that implement IntegerType
Modifier and Type	Class and Description
`class`	`BitType` TODO
`class`	`BoolType` A `BooleanType` wrapping a single primitive `boolean` variable.
`class`	`NativeBoolType` `NativeType` backed by `boolean`.

Uses of IntegerType in net.imglib2.type.numeric

Classes in net.imglib2.type.numeric with type parameters of type IntegerType
Modifier and Type	Interface and Description
`interface`	`IntegerType<T extends IntegerType<T>>` TODO

Uses of IntegerType in net.imglib2.type.numeric.integer

Classes in net.imglib2.type.numeric.integer that implement IntegerType
Modifier and Type	Class and Description
`class`	`AbstractIntegerBitType<T extends AbstractIntegerBitType<T>>` The performance of this type is traded off for the gain in memory storage.
`class`	`AbstractIntegerType<T extends AbstractIntegerType<T>>` TODO
`class`	`ByteLongAccessType`
`class`	`ByteType` TODO
`class`	`GenericByteLongAccessType<T extends GenericByteLongAccessType<T>>` TODO
`class`	`GenericByteType<T extends GenericByteType<T>>` TODO
`class`	`GenericIntLongAccessType<T extends GenericIntLongAccessType<T>>`
`class`	`GenericIntType<T extends GenericIntType<T>>` TODO
`class`	`GenericLongLongAccessType<T extends GenericLongLongAccessType<T>>` Abstract superclass for Long types.
`class`	`GenericLongType<T extends GenericLongType<T>>` Abstract superclass for Long types.
`class`	`GenericShortLongAccessType<T extends GenericShortLongAccessType<T>>` Abstract base class for `native` `IntegerType`s that encode their value into a 16bit short.
`class`	`GenericShortType<T extends GenericShortType<T>>` Abstract base class for `native` `IntegerType`s that encode their value into a 16bit short.
`class`	`IntLongAccessType`
`class`	`IntType` TODO
`class`	`LongLongAccessType`
`class`	`LongType` TODO
`class`	`ShortLongAccessType`
`class`	`ShortType` TODO
`class`	`Unsigned128BitType` A `Type` with a bit depth of 128.
`class`	`Unsigned12BitType` A 12-bit `Type` whose data is stored in a `LongAccess`.
`class`	`Unsigned2BitType` A `Type` with a bit depth of 2.
`class`	`Unsigned4BitType` A `Type` with a bit depth of 4.
`class`	`UnsignedByteLongAccessType`
`class`	`UnsignedByteType` TODO
`class`	`UnsignedIntLongAccessType`
`class`	`UnsignedIntType` TODO
`class`	`UnsignedLongLongAccessType` TODO
`class`	`UnsignedLongType` TODO
`class`	`UnsignedShortLongAccessType`
`class`	`UnsignedShortType` TODO
`class`	`UnsignedVariableBitLengthType` A `Type` with arbitrary bit depth up to maximum 64 bits.

Uses of IntegerType in net.imglib2.util

Methods in net.imglib2.util with type parameters of type IntegerType
Modifier and Type	Method and Description
`static <T extends IntegerType<T>> void`	ImgUtil.`copy(Img<T> src, int[] dest, int offset, int[] stride)`
`static <T extends IntegerType<T>> void`	ImgUtil.`copy(Img<T> src, long[] dest, int offset, int[] stride)`
`static <T extends IntegerType<T>> void`	ImgUtil.`copy(Img<T> src, short[] dest, int offset, int[] stride)`
`static <T extends IntegerType<T>> void`	ImgUtil.`copy(int[] src, int offset, int[] stride, Img<T> dest)`
`static <T extends IntegerType<T>> void`	ImgUtil.`copy(long[] src, int offset, int[] stride, Img<T> dest)`

Method parameters in net.imglib2.util with type arguments of type IntegerType
Modifier and Type	Method and Description
`static Collection<BigInteger>`	FlatCollections.`bigIntegerCollection(IterableInterval<? extends IntegerType<?>> image)` Wraps an `IntegerType` iterable image as a collection.
`static List<BigInteger>`	FlatCollections.`bigIntegerList(RandomAccessibleInterval<? extends IntegerType<?>> image)` Wraps a `IntegerType` random-accessible image as a list.
`static Collection<Integer>`	FlatCollections.`integerCollection(IterableInterval<? extends IntegerType<?>> image)` Wraps an `IntegerType` iterable image as a collection.
`static List<Integer>`	FlatCollections.`integerList(RandomAccessibleInterval<? extends IntegerType<?>> image)` Wraps an `IntegerType` random-accessible image as a list.
`static Collection<Long>`	FlatCollections.`longCollection(IterableInterval<? extends IntegerType<?>> image)` Wraps an `IntegerType` iterable image as a collection.
`static List<Long>`	FlatCollections.`longList(RandomAccessibleInterval<? extends IntegerType<?>> image)` Wraps an `IntegerType` random-accessible image as a list.

Uses of IntegerType in net.imglib2.view

Methods in net.imglib2.view with type parameters of type IntegerType
Modifier and Type	Method and Description
`static <T extends IntegerType<T>> IntervalView<T>`	Views.`expandValue(RandomAccessibleInterval<T> source, int value, long... border)` Expand a RandomAccessibleInterval as specified by border.
`static <T extends IntegerType<T>> IntervalView<T>`	Views.`expandValue(RandomAccessibleInterval<T> source, long value, long... border)` Expand a RandomAccessibleInterval as specified by border.
`static <T extends IntegerType<T>,F extends RandomAccessibleInterval<T>> ExtendedRandomAccessibleInterval<T,F>`	Views.`extendValue(F source, int value)` Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy.
`static <T extends IntegerType<T>,F extends RandomAccessibleInterval<T>> ExtendedRandomAccessibleInterval<T,F>`	Views.`extendValue(F source, long value)` Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy.

Uses of Interfacenet.imglib2.type.numeric.IntegerType

Uses of IntegerType in net.imglib2.algorithm.hough

Uses of IntegerType in net.imglib2.algorithm.labeling

Uses of IntegerType in net.imglib2.algorithm.math.abstractions

Uses of IntegerType in net.imglib2.algorithm.stats

Uses of IntegerType in net.imglib2.algorithm.util.unionfind

Uses of IntegerType in net.imglib2.histogram

Uses of IntegerType in net.imglib2.labeling

Uses of IntegerType in net.imglib2.roi.labeling

Uses of IntegerType in net.imglib2.test

Uses of IntegerType in net.imglib2.type.logic

Uses of IntegerType in net.imglib2.type.numeric

Uses of IntegerType in net.imglib2.type.numeric.integer

Uses of IntegerType in net.imglib2.util

Uses of IntegerType in net.imglib2.view

Uses of Interface
net.imglib2.type.numeric.IntegerType