Uses of Interface sc.fiji.snt.util.SNTPoint (Fiji Javadocs 0-SNAPSHOT API)

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Packages that use SNTPoint
Package	Description
sc.fiji.snt	SNT core classes
sc.fiji.snt.analysis	Analysis of `Tree`s.
sc.fiji.snt.annotation	Classes handling neuropil annotations and atlases metadata.
sc.fiji.snt.util	Miscellaneous SNT utilities, including classes defining reconstruction nodes.
sc.fiji.snt.viewer	Visualization of reconstructions

Uses of SNTPoint in sc.fiji.snt

Methods in sc.fiji.snt with parameters of type SNTPoint
Modifier and Type	Method and Description
`Path`	SNT.`autoTrace(SNTPoint start, SNTPoint end, PointInImage forkPoint)` Automatically traces a path from a point A to a point B.
`Path`	SNT.`autoTrace(SNTPoint start, SNTPoint end, PointInImage forkPoint, boolean headless)`

Method parameters in sc.fiji.snt with type arguments of type SNTPoint
Modifier and Type	Method and Description
`Path`	SNT.`autoTrace(List<SNTPoint> pointList, PointInImage forkPoint)` Automatically traces a path from a list of points and adds it to the active `PathAndFillManager` instance.
`Path`	SNT.`autoTrace(List<SNTPoint> pointList, PointInImage forkPoint, boolean headless)`

Uses of SNTPoint in sc.fiji.snt.analysis

Fields in sc.fiji.snt.analysis with type parameters of type SNTPoint
Modifier and Type Field and Description

protected Collection<? extends SNTPoint> AbstractConvexHull.points

Methods in sc.fiji.snt.analysis that return types with arguments of type SNTPoint
Modifier and Type Method and Description

Collection<? extends SNTPoint> NodeColorMapper.getNodes()

Uses of SNTPoint in sc.fiji.snt.annotation

Methods in sc.fiji.snt.annotation that return SNTPoint
Modifier and Type	Method and Description
`static SNTPoint`	ZBAtlasUtils.`brainBarycentre()` Returns the spatial centroid of the template brain.
`static SNTPoint`	VFBUtils.`brainBarycentre(String templateBrain)` Returns the spatial centroid of an adult Drosophila template brain.
`static SNTPoint`	AllenUtils.`brainCenter()` Returns the spatial centroid of the Allen CCF.

Methods in sc.fiji.snt.annotation with parameters of type SNTPoint
Modifier and Type	Method and Description
`static boolean`	AllenUtils.`isLeftHemisphere(SNTPoint point)` Checks the hemisphere a reconstruction node belongs to.

Uses of SNTPoint in sc.fiji.snt.util

Classes in sc.fiji.snt.util that implement SNTPoint
Modifier and Type	Class and Description
`class`	`PointInCanvas` Defines a Point in a tracing canvas in pixel coordinates.
`class`	`PointInImage` Defines a Point in an image, a node of a traced `Path`.
`class`	`ShollPoint` Convenience flavor of `PointInImage` defining 2D/3D points for Sholll Analysis.
`class`	`SWCPoint` Defines a node in an SWC reconstruction.

Methods in sc.fiji.snt.util with type parameters of type SNTPoint
Modifier and Type	Method and Description
`static <T extends SNTPoint> T`	SNTPoint.`average(Collection<T> points)`

Methods in sc.fiji.snt.util that return SNTPoint
Modifier and Type	Method and Description
`SNTPoint`	BoundingBox.`getCentroid()`

Methods in sc.fiji.snt.util with parameters of type SNTPoint
Modifier and Type	Method and Description
`boolean`	BoundingBox.`contains(SNTPoint point)`

Method parameters in sc.fiji.snt.util with type arguments of type SNTPoint
Modifier and Type	Method and Description
`void`	BoundingBox.`append(Iterator<? extends SNTPoint> iterator)` Computes the bounding box of the specified point cloud and appends it to this bounding box, resizing it as needed.
`void`	BoundingBox.`compute(Iterator<? extends SNTPoint> iterator)` Computes a new positioning so that this box encloses the specified point cloud.

Uses of SNTPoint in sc.fiji.snt.viewer

Methods in sc.fiji.snt.viewer that return SNTPoint
Modifier and Type	Method and Description
`SNTPoint`	Annotation3D.`getBarycentre()` Returns the center of this annotation bounding box.
`SNTPoint`	OBJMesh.`getCentroid(String hemihalf)` Returns the spatial centroid of the specified (hemi)mesh.

Methods in sc.fiji.snt.viewer that return types with arguments of type SNTPoint
Modifier and Type	Method and Description
`Collection<? extends SNTPoint>`	OBJMesh.`getVertices()` Returns the mesh vertices.
`Collection<? extends SNTPoint>`	OBJMesh.`getVertices(String hemihalf)` Returns the mesh vertices.

Methods in sc.fiji.snt.viewer with parameters of type SNTPoint
Modifier and Type	Method and Description
`Annotation3D`	Viewer3D.`annotatePoint(SNTPoint point, String label)` Adds an highlighting point annotation to this viewer.
`Annotation3D`	Viewer3D.`annotatePoint(SNTPoint node, String label, String color, float size)` Adds an highlighting point annotation to this viewer.
`void`	Viewer3D.`translate(Collection<String> treeLabels, SNTPoint offset)` Translates the specified collection of `Tree`s.
`void`	OBJMesh.`translate(SNTPoint offset)` Translates the vertices of this mesh by the specified offset.
`void`	Viewer3D.`translate(Tree tree, SNTPoint offset)` Translates the specified Tree.

Method parameters in sc.fiji.snt.viewer with type arguments of type SNTPoint
Modifier and Type	Method and Description
`Annotation3D`	Viewer3D.`annotateLine(Collection<? extends SNTPoint> points, String label)` Adds a line annotation to this viewer.
`Annotation3D`	Viewer3D.`annotatePoints(Collection<? extends SNTPoint> points, String label)` Adds a scatter (point cloud) annotation to this viewer.
`Annotation3D`	Viewer3D.`annotateSurface(Collection<? extends SNTPoint> points, String label)`
`Annotation3D`	Viewer3D.`annotateSurface(Collection<? extends SNTPoint> points, String label, boolean computeVolume)` Computes a convex hull from a collection of points and adds it to the scene as an annotation.

Constructors in sc.fiji.snt.viewer with parameters of type SNTPoint
Constructor and Description
`Annotation3D(Viewer3D viewer, SNTPoint point)`

Constructor parameters in sc.fiji.snt.viewer with type arguments of type SNTPoint
Constructor and Description
`Annotation3D(Viewer3D viewer, Collection<? extends SNTPoint> points, int type)`

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