| Package | Description |
|---|---|
| sc.fiji.snt.analysis |
Analysis of
Trees. |
| sc.fiji.snt.annotation |
Classes handling neuropil annotations and atlases metadata.
|
| sc.fiji.snt.io |
Classes for importing reconstructions into SNT.
|
| Modifier and Type | Method and Description |
|---|---|
void |
MultiTreeColorMapper.mapRootDistanceToCentroid(AllenCompartment compartment,
ColorTable colorTable) |
| Modifier and Type | Method and Description |
|---|---|
AllenCompartment |
AllenCompartment.getAncestor(int level)
Gets the nth ancestor of this compartment.
|
static AllenCompartment |
AllenUtils.getCompartment(int id)
Constructs a compartment from its CCF id
|
static AllenCompartment |
AllenUtils.getCompartment(String nameOrAcronym)
Constructs a compartment from its CCF name or acronym
|
AllenCompartment |
AllenCompartment.getParent()
Gets the parent of this compartment.
|
| Modifier and Type | Method and Description |
|---|---|
List<AllenCompartment> |
AllenCompartment.getAncestors()
Gets the ancestor ontologies of this compartment as a flat (non-hierarchical)
list.
|
List<AllenCompartment> |
AllenCompartment.getChildren()
Gets the child ontologies of this compartment as a flat (non-hierarchical)
list.
|
List<AllenCompartment> |
AllenCompartment.getChildren(int level)
Gets the child ontologies of this compartment as a flat (non-hierarchical)
list.
|
static List<AllenCompartment> |
AllenUtils.getOntologies()
Gets the Allen CCF as a flat (non-hierarchical) collection of ontologies.
|
static List<AllenCompartment> |
AllenUtils.getOntologies(int depth,
boolean meshes)
Gets a flat (non-hierarchical) list of all the compartments of the specified
ontology depth.
|
List<AllenCompartment> |
AllenCompartment.getTreePath()
Gets the tree path of this compartment.
|
| Modifier and Type | Method and Description |
|---|---|
AllenCompartment |
MouseLightLoader.getSomaCompartment() |
| Modifier and Type | Method and Description |
|---|---|
static List<String> |
MouseLightQuerier.getIDs(AllenCompartment compartment) |
| Modifier and Type | Method and Description |
|---|---|
static List<String> |
MouseLightQuerier.getIDs(Collection<AllenCompartment> compartments) |
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