| Package | Description |
|---|---|
| sc.fiji.snt.analysis.sholl |
Sholl analysis of Images, pre-sampled data and
Trees. |
| sc.fiji.snt.analysis.sholl.gui |
GUI customizations (image overlays, plots, etc.) required for Sholl Analysis.
|
| sc.fiji.snt.analysis.sholl.math |
Statistical analysis of Sholl data
|
| sc.fiji.snt.analysis.sholl.parsers |
Parsers to retrieve Profiles from multiple sources (2D/3D images, reconstructions, and tables)
|
| sc.fiji.snt.plugin |
SNT add-ons as IJ2 commands
|
| Modifier and Type | Method and Description |
|---|---|
static Profile |
ShollUtils.demoProfile() |
Profile |
Profile.duplicate() |
| Constructor and Description |
|---|
ShollOverlay(Profile profile) |
ShollOverlay(Profile profile,
ij.ImagePlus imp) |
ShollOverlay(Profile profile,
ij.ImagePlus imp,
boolean clearExistingROIs) |
ShollPlot(Profile... profiles) |
ShollPlot(Profile profile) |
ShollTable(Profile profile)
Instantiates a new table from a
Profile |
| Modifier and Type | Method and Description |
|---|---|
Profile |
ShollStats.getProfile() |
| Constructor and Description |
|---|
Comparator(Profile profile1,
Profile profile2) |
LinearProfileStats(Profile profile)
Instantiates the Linear Profile Statistics.
|
NormalizedProfileStats(Profile profile,
int normalizationFlag) |
NormalizedProfileStats(Profile profile,
int normalizationFlag,
int methodFlag) |
| Modifier and Type | Field and Description |
|---|---|
protected Profile |
ImageParser.profile |
| Modifier and Type | Method and Description |
|---|---|
Profile |
TreeParser.getProfile() |
Profile |
TabularParser.getProfile() |
Profile |
Parser.getProfile() |
Profile |
ImageParser.getProfile() |
| Modifier and Type | Method and Description |
|---|---|
protected Profile |
ShollAnalysisImgCmd.getProfile() |
| Modifier and Type | Method and Description |
|---|---|
protected void |
ShollAnalysisImgCmd.setProfile(Profile profile) |
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