| Package | Description |
|---|---|
| sc.fiji.analyzeSkeleton | |
| sc.fiji.analyzeSkeleton.ita |
| Modifier and Type | Method and Description |
|---|---|
Point |
Point.clone() |
| Modifier and Type | Method and Description |
|---|---|
ArrayList<Point> |
AnalyzeSkeleton_.getEndPoints()
Get the list of endpoints in the skeleton image.
|
ArrayList<Point> |
SkeletonResult.getListOfEndPoints() |
ArrayList<Point> |
SkeletonResult.getListOfJunctionVoxels() |
ArrayList<Point> |
SkeletonResult.getListOfSlabVoxels() |
ArrayList<Point> |
SkeletonResult.getListOfStartingSlabVoxels() |
ArrayList<Point> |
Vertex.getPoints()
Get list of points.
|
ArrayList<Point> |
Edge.getSlabs()
Get list of slab voxels belonging to the edge.
|
| Modifier and Type | Method and Description |
|---|---|
void |
Vertex.addPoint(Point p)
Add point to the vertex.
|
double |
AnalyzeSkeleton_.calculateDistance(Point point1,
Point point2)
Calculate Euclidean distance between two points in 3D.
|
Vertex |
AnalyzeSkeleton_.findPointVertex(Vertex[] vertex,
Point p)
Find vertex in an array given a specific vertex point.
|
static double |
AnalyzeSkeleton_.getAverageNeighborhoodValue(ij.ImageStack image,
Point p,
int x_offset,
int y_offset,
int z_offset)
Get average neighborhood pixel value of a given point.
|
static byte[] |
AnalyzeSkeleton_.getNeighborhood(ij.ImageStack image,
Point p,
int x_offset,
int y_offset,
int z_offset)
Get neighborhood of a pixel in a 3D image (0 border conditions).
|
boolean |
Vertex.isVertexPoint(Point p)
Check if a point belongs to the vertex list of points.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SkeletonResult.setListOfEndPoints(ArrayList<Point> listOfEndPoints) |
void |
SkeletonResult.setListOfJunctionVoxels(ArrayList<Point> listOfJunctionVoxels) |
void |
SkeletonResult.setListOfSlabVoxels(ArrayList<Point> listOfSlabVoxels) |
void |
SkeletonResult.setListOfStartingSlabVoxels(ArrayList<Point> listOfStartingSlabVoxels) |
| Constructor and Description |
|---|
Edge(Vertex v1,
Vertex v2,
ArrayList<Point> slabs,
double length)
Create an edge of specific vertices and list of slab voxels.
|
Edge(Vertex v1,
Vertex v2,
ArrayList<Point> slabs,
double length,
double color3rd,
double color,
double length_ra)
Create an edge of specific vertices and list of slab voxels.
|
| Modifier and Type | Method and Description |
|---|---|
static org.joml.Vector3d |
PointUtils.centroid(Collection<Point> points)
Returns the center of the given points.
|
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