Uses of Class mpicbg.imglib.image.ImageFactory (Fiji Javadocs 0-SNAPSHOT API)

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Packages that use ImageFactory
Package	Description
mpicbg.imglib.algorithm
mpicbg.imglib.algorithm.fft
mpicbg.imglib.algorithm.gauss
mpicbg.imglib.algorithm.labeling
mpicbg.imglib.algorithm.math
mpicbg.imglib.algorithm.roi
mpicbg.imglib.algorithm.scalespace
mpicbg.imglib.algorithm.transformation
mpicbg.imglib.image
mpicbg.imglib.io
mpicbg.imglib.labeling
mpicbg.spim.postprocessing.deconvolution2
mpicbg.stitching

Uses of ImageFactory in mpicbg.imglib.algorithm

Methods in mpicbg.imglib.algorithm with parameters of type ImageFactory
Modifier and Type	Method and Description
`void`	ROIAlgorithm.`setImageFactory(ImageFactory<S> factory)` Set the `ImageFactory` used to create the output `Image`

Uses of ImageFactory in mpicbg.imglib.algorithm.fft

Methods in mpicbg.imglib.algorithm.fft with parameters of type ImageFactory
Modifier and Type	Method and Description
`static <T extends RealType<T>> Image<T>`	FourierConvolution.`getGaussianKernel(ImageFactory<T> imgFactory, double[] sigma)`
`static <T extends RealType<T>> Image<T>`	FourierConvolution.`getGaussianKernel(ImageFactory<T> imgFactory, double sigma, int numDimensions)`

Uses of ImageFactory in mpicbg.imglib.algorithm.gauss

Constructors in mpicbg.imglib.algorithm.gauss with parameters of type ImageFactory
Constructor and Description
`GaussianConvolution2(Image<A> image, ImageFactory<B> factoryProcess, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, Converter<A,B> converterIn, double sigma)`
`GaussianConvolution2(Image<A> image, ImageFactory<B> factoryProcess, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, Converter<A,B> converterIn, double[] sigma)`
`GaussianConvolution3(Image<A> image, ImageFactory<B> factoryProcess, ImageFactory<C> factoryOut, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, Converter<A,B> converterIn, Converter<B,C> converterOut, double sigma)`
`GaussianConvolution3(Image<A> image, ImageFactory<B> factoryProcess, ImageFactory<C> factoryOut, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, Converter<A,B> converterIn, Converter<B,C> converterOut, double sigma)`
`GaussianConvolution3(Image<A> image, ImageFactory<B> factoryProcess, ImageFactory<C> factoryOut, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, Converter<A,B> converterIn, Converter<B,C> converterOut, double[] sigma)`
`GaussianConvolution3(Image<A> image, ImageFactory<B> factoryProcess, ImageFactory<C> factoryOut, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, Converter<A,B> converterIn, Converter<B,C> converterOut, double[] sigma)`
`GaussianConvolution4(Image<A> image, ImageFactory<B> factoryProcess, ImageFactory<C> factoryOut, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, Converter<A,B> converterIn, Converter<B,C> converterOut, B sigma)`
`GaussianConvolution4(Image<A> image, ImageFactory<B> factoryProcess, ImageFactory<C> factoryOut, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, Converter<A,B> converterIn, Converter<B,C> converterOut, B sigma)`
`GaussianConvolution4(Image<A> image, ImageFactory<B> factoryProcess, ImageFactory<C> factoryOut, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, Converter<A,B> converterIn, Converter<B,C> converterOut, B[] sigma)`
`GaussianConvolution4(Image<A> image, ImageFactory<B> factoryProcess, ImageFactory<C> factoryOut, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, Converter<A,B> converterIn, Converter<B,C> converterOut, B[] sigma)`

Uses of ImageFactory in mpicbg.imglib.algorithm.labeling

Fields in mpicbg.imglib.algorithm.labeling declared as ImageFactory
Modifier and Type	Field and Description
`protected ImageFactory<FloatType>`	GradientWatershed.`floatFactory`
`protected ImageFactory<LabelingType<L>>`	GradientWatershed.`labelingFactory`

Methods in mpicbg.imglib.algorithm.labeling that return ImageFactory
Modifier and Type	Method and Description
`protected ImageFactory<FloatType>`	GradientWatershed.`getFloatFactory()`
`ImageFactory<LabelingType<L>>`	GradientWatershed.`getOutputImageFactory()`

Methods in mpicbg.imglib.algorithm.labeling with parameters of type ImageFactory
Modifier and Type	Method and Description
`void`	GradientWatershed.`setOutputImageFactory(ImageFactory<LabelingType<L>> factory)` Set the image factory to use when creating the Labeling.

Uses of ImageFactory in mpicbg.imglib.algorithm.math

Methods in mpicbg.imglib.algorithm.math with parameters of type ImageFactory
Modifier and Type	Method and Description
`protected static <T extends Type<T>> Image<T>`	ImageConverter.`createImageFromFactory(ImageFactory<T> factory, int[] size)`
`protected static <U extends Type<U>> Image<U>`	ImageCalculator.`createImageFromFactory(ImageFactory<U> factory, int[] size)`

Constructors in mpicbg.imglib.algorithm.math with parameters of type ImageFactory
Constructor and Description
`ImageCalculator(Image<S> image1, Image<T> image2, ImageFactory<U> factory, Function<S,T,U> function)`
`ImageConverter(Image<S> image, ImageFactory<T> factory, Converter<S,T> converter)`

Uses of ImageFactory in mpicbg.imglib.algorithm.roi

Constructors in mpicbg.imglib.algorithm.roi with parameters of type ImageFactory
Constructor and Description
`StructuringElement(ImageFactory<BitType> factory, int[] dimensions, String name)`

Uses of ImageFactory in mpicbg.imglib.algorithm.scalespace

Fields in mpicbg.imglib.algorithm.scalespace declared as ImageFactory
Modifier and Type	Field and Description
`protected ImageFactory<B>`	DifferenceOfGaussian.`factory`

Methods in mpicbg.imglib.algorithm.scalespace with parameters of type ImageFactory
Modifier and Type	Method and Description
`protected Image<B>`	ScaleSpace.`convert(Image<A> input, ImageFactory<B> processFactory, Converter<A,B> converter)`
`protected static <T extends RealType<T>> T`	DifferenceOfGaussianReal.`createVariable(ImageFactory<T> img, double value)`
`protected Image<B>`	ScaleSpace.`upSample(Image<A> input, ImageFactory<B> processFactory, Converter<A,B> converter)` Upsamples the image by a factor of 2.

Constructors in mpicbg.imglib.algorithm.scalespace with parameters of type ImageFactory
Constructor and Description
`DifferenceOfGaussian(Image<A> img, ImageFactory<B> factory, Converter<A,B> converter, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, double[] sigma1, double[] sigma2, B minPeakValue, B normalizationFactor)` Extracts local minima and maxima of a certain size.
`DifferenceOfGaussian(Image<A> img, ImageFactory<B> factory, Converter<A,B> converter, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, double sigma1, double sigma2, B minPeakValue, B normalizationFactor)` Calls the DifferenceOfGaussian constructor with the given sigmas copied into double[] arrays, one entry per dimension.
`DifferenceOfGaussianReal(Image<A> img, ImageFactory<B> factory, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, double[] sigma1, double[] sigma2, double minPeakValue, double normalizationFactor)`
`DifferenceOfGaussianReal(Image<A> img, ImageFactory<B> factory, OutOfBoundsStrategyFactory<B> outOfBoundsFactory, double sigma1, double sigma2, double minPeakValue, double normalizationFactor)`
`ScaleSpace(Image<A> image, ImageFactory<B> processFactory, Converter<A,B> converter, double initialSigma)`

Uses of ImageFactory in mpicbg.imglib.algorithm.transformation

Methods in mpicbg.imglib.algorithm.transformation that return ImageFactory
Modifier and Type	Method and Description
`ImageFactory<T>`	ImageTransform.`getOutputImageFactory()`

Methods in mpicbg.imglib.algorithm.transformation with parameters of type ImageFactory
Modifier and Type	Method and Description
`void`	ImageTransform.`setOutputImageFactory(ImageFactory<T> outputImageFactory)`

Constructors in mpicbg.imglib.algorithm.transformation with parameters of type ImageFactory
Constructor and Description
`HoughLineTransform(Image<T> inputImage, ImageFactory<S> factory, int inNRho, int inNTheta)` Create a `HoughLineTransform` to operate against a given `Image`, with a specific `ImageFactory` for the vote space, and specific rho- and theta-resolution.
`HoughTransform(Image<T> inputImage, int[] voteSize, ImageFactory<S> voteFactory)` Constructor for a HoughTransform with a specific ImageFactory.

Uses of ImageFactory in mpicbg.imglib.image

Methods in mpicbg.imglib.image that return ImageFactory
Modifier and Type Method and Description

ImageFactory<T> Image.getImageFactory()
Returns the ImageFactory of this Image.

Constructors in mpicbg.imglib.image with parameters of type ImageFactory
Constructor and Description

Image(ImageFactory<T> imageFactory, int[] dim, String name)

Uses of ImageFactory in mpicbg.imglib.io

Methods in mpicbg.imglib.io with parameters of type ImageFactory
Modifier and Type	Method and Description
`<T extends RealType<T>> Image<T>`	ImageOpener.`openImage(IFormatReader r, ImageFactory<T> imageFactory)` Reads in an imglib `Image` from the given initialized `IFormatReader`, using the given `ImageFactory`.
`<T extends RealType<T>> Image<T>`	ImageOpener.`openImage(String id, ImageFactory<T> imageFactory)` Reads in an imglib `Image` from the given source (e.g., file on disk), using the given `ImageFactory` to construct the `Image`.
`static Image<ByteType>`	LOCI.`openLOCIByteType(String fileName, ImageFactory<ByteType> factory)`
`static Image<ByteType>`	LOCI.`openLOCIByteType(String path, String fileName, ImageFactory<ByteType> factory)`
`static Image<ByteType>`	LOCI.`openLOCIByteType(String path, String fileName, ImageFactory<ByteType> factory, int from, int to)`
`static Image<FloatType>`	LOCI.`openLOCIFloatType(String fileName, ImageFactory<FloatType> factory)`
`static Image<FloatType>`	LOCI.`openLOCIFloatType(String path, String fileName, ImageFactory<FloatType> factory)`
`static Image<FloatType>`	LOCI.`openLOCIFloatType(String path, String fileName, ImageFactory<FloatType> factory, int from, int to)`
`static Image<RGBALegacyType>`	LOCI.`openLOCIRGBALegacyType(String path, String fileName, ImageFactory<RGBALegacyType> factory)`
`static Image<RGBALegacyType>`	LOCI.`openLOCIRGBALegacyType(String path, String fileName, ImageFactory<RGBALegacyType> factory, int from, int to)`
`static Image<ShortType>`	LOCI.`openLOCIShortType(String fileName, ImageFactory<ShortType> factory)`
`static Image<ShortType>`	LOCI.`openLOCIShortType(String path, String fileName, ImageFactory<ShortType> factory)`
`static Image<ShortType>`	LOCI.`openLOCIShortType(String path, String fileName, ImageFactory<ShortType> factory, int from, int to)`
`static Image<Unsigned12BitType>`	LOCI.`openLOCIUnsigned12BitType(String fileName, ImageFactory<Unsigned12BitType> factory)`
`static Image<Unsigned12BitType>`	LOCI.`openLOCIUnsigned12BitType(String path, String fileName, ImageFactory<Unsigned12BitType> factory)`
`static Image<Unsigned12BitType>`	LOCI.`openLOCIUnsigned12BitType(String path, String fileName, ImageFactory<Unsigned12BitType> factory, int from, int to)`
`static Image<UnsignedByteType>`	LOCI.`openLOCIUnsignedByteType(String fileName, ImageFactory<UnsignedByteType> factory)`
`static Image<UnsignedByteType>`	LOCI.`openLOCIUnsignedByteType(String path, String fileName, ImageFactory<UnsignedByteType> factory)`
`static Image<UnsignedByteType>`	LOCI.`openLOCIUnsignedByteType(String path, String fileName, ImageFactory<UnsignedByteType> factory, int from, int to)`

Uses of ImageFactory in mpicbg.imglib.labeling

Constructors in mpicbg.imglib.labeling with parameters of type ImageFactory
Constructor and Description
`Labeling(ImageFactory<LabelingType<T>> imageFactory, int[] dim, String name)` Create a named labeling from an image factory

Uses of ImageFactory in mpicbg.spim.postprocessing.deconvolution2

Methods in mpicbg.spim.postprocessing.deconvolution2 with parameters of type ImageFactory
Modifier and Type	Method and Description
`protected static Thread`	LRFFTThreads.`getCPUThread1(AtomicInteger ai, Block[] blocks, int[] blockSize, ImageFactory<FloatType> factory, Image<FloatType> image, Image<FloatType> result, FourierConvolution<FloatType,FloatType> fftConvolution1)`
`protected static Thread`	LRFFTThreads.`getCPUThread2(AtomicInteger ai, Block[] blocks, int[] blockSize, ImageFactory<FloatType> factory, Image<FloatType> image, Image<FloatType> result, FourierConvolution<FloatType,FloatType> fftConvolution2)`
`protected static Thread`	LRFFTThreads.`getCUDAThread1(AtomicInteger ai, Block[] blocks, int[] blockSize, ImageFactory<FloatType> factory, Image<FloatType> image, Image<FloatType> result, int deviceId, Image<FloatType> kernel1)`
`protected static Thread`	LRFFTThreads.`getCUDAThread2(AtomicInteger ai, Block[] blocks, int[] blockSize, ImageFactory<FloatType> factory, Image<FloatType> image, Image<FloatType> result, int deviceId, Image<FloatType> kernel2)`
`protected static Image<FloatType>`	BayesMVDeconvolution.`loadInitialImage(String fileName, boolean checkNumbers, float minValue, int[] dimensions, ImageFactory<FloatType> imageFactory)`

Uses of ImageFactory in mpicbg.stitching

Methods in mpicbg.stitching with parameters of type ImageFactory
Modifier and Type	Method and Description
`static <T extends RealType<T>> Image<T>`	PairWiseStitchingImgLib.`getImage(ij.ImagePlus imp, Roi roi, ImageFactory<T> imgFactory, int channel, int timepoint)` return an `Image<T>` as input for the PhaseCorrelation.

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