| Package | Description |
|---|---|
| ini.trakem2.analysis | |
| ini.trakem2.imaging | |
| ini.trakem2.persistence | |
| ini.trakem2.utils | |
| lenscorrection |
| Modifier and Type | Method and Description |
|---|---|
static VectorString3D |
Compare.condense(Compare.CATAParameters cp,
VectorString3D[] vs,
Worker worker)
Do an all-to-all distance matrix of the given vs, then do a neighbor joining, do a weighted merge of the two VectorString3D being merged, and then finally output the resulting condensed unique VectorString3D with its source array full with all points that make each point in it.
|
static float[][] |
Compare.scoreAllToAll(VectorString3D[] vs,
int distance_type,
double delta,
boolean skip_ends,
int max_mut,
float min_chunk,
boolean direct,
boolean substring_matching,
Worker worker)
Returns the half matrix of scores, with values copied from one half matrix to the other, and a diagonal of zeros.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
StitchingTEM.montageWithPhaseCorrelation(List<Layer> layers,
Worker worker) |
| Modifier and Type | Method and Description |
|---|---|
static Worker |
ExportMultilevelTiles.exportFromMipMaps(TreeMap<Integer,Layer> indices,
int smallestIndex,
String dir,
Saver saver,
Rectangle srcRect,
int c_alphas,
int type,
Class<?> clazz,
int tileSide,
int directory_structure_type,
boolean use_layer_indices,
boolean skip_empty_tiles,
int n_threads) |
static Worker |
ExportMultilevelTiles.exportFromMipMapsLayerWise(TreeMap<Integer,Layer> indices,
int smallestIndex,
String dir,
Saver saver,
Rectangle srcRect,
int c_alphas,
int type,
Class<?> clazz,
int tileSide,
int directory_structure_type,
boolean use_layer_indices,
boolean skip_empty_tiles,
int n_threads)
When I/O limited, optimize parallel mipmap loading (so that no Thread is waiting on any other Thread to finish loading a mipmap)
by generating tiles Patch-wise, processing one Patch at a time, and one Layer per Thread.
|
static Worker |
ExportMultilevelTiles.exportFromOriginals(TreeMap<Integer,Layer> indices,
int smallestIndex,
String dir,
Saver saver,
Rectangle srcRect,
int c_alphas,
int type,
Class<?> clazz,
int tileSide,
int directory_structure_type,
boolean use_layer_indices,
boolean skip_empty_tiles,
int n_threads) |
| Modifier and Type | Class and Description |
|---|---|
static class |
Worker.Task
A class that calls run() wrapped properly for task monitoring;
Create it like this:
Bureaucrat b = Bureaucrat.createAndStart(new Worker.Task("Title") { public void exec() {
doSomething();
doSomethingElse();
}}, project);
|
| Modifier and Type | Method and Description |
|---|---|
Worker |
Bureaucrat.getWorker() |
| Modifier and Type | Method and Description |
|---|---|
static Bureaucrat |
Bureaucrat.create(Worker worker,
Project project)
Creates but does not start the Bureaucrat thread.
|
static Bureaucrat |
Bureaucrat.create(Worker worker,
Project[] project)
Creates but does not start the Bureaucrat thread.
|
static Bureaucrat |
Bureaucrat.createAndStart(Worker worker,
Project project)
Creates and start the Bureaucrat thread.
|
static Bureaucrat |
Bureaucrat.createAndStart(Worker worker,
Project[] project)
Creates and start the Bureaucrat thread.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
DistortionCorrectionTask.run(DistortionCorrectionTask.CorrectDistortionFromSelectionParam p,
List<Patch> patches,
Displayable active,
Layer layer,
Worker worker) |
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