| Package | Description |
|---|---|
| fiji.plugin.trackmate | |
| fiji.plugin.trackmate.features | |
| fiji.plugin.trackmate.features.edges |
Package for the classes that compute scalar features on links between
spots (edges), such as instantaneous velocities, etc....
|
| fiji.plugin.trackmate.features.manual | |
| fiji.plugin.trackmate.features.spot | |
| fiji.plugin.trackmate.features.track | |
| fiji.plugin.trackmate.util |
| Modifier and Type | Field and Description |
|---|---|
static Map<String,Dimension> |
Spot.FEATURE_DIMENSIONS
The 7 privileged spot feature dimensions.
|
| Modifier and Type | Method and Description |
|---|---|
static Dimension |
Dimension.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static Dimension[] |
Dimension.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
| Modifier and Type | Method and Description |
|---|---|
Map<String,Dimension> |
FeatureModel.getEdgeFeatureDimensions()
Returns the dimension mapping of the edge features that are dealt with in
this model.
|
Map<String,Dimension> |
FeatureModel.getSpotFeatureDimensions()
Returns the dimension mapping of the spot features that are dealt with in
this model.
|
Map<String,Dimension> |
FeatureModel.getTrackFeatureDimensions()
Returns the dimension mapping of the track features that are dealt with
in this model.
|
| Modifier and Type | Method and Description |
|---|---|
void |
FeatureModel.declareEdgeFeatures(Collection<String> features,
Map<String,String> featureNames,
Map<String,String> featureShortNames,
Map<String,Dimension> featureDimensions,
Map<String,Boolean> isIntFeature)
Declares edge features, by specifying their name, short name and
dimension.
|
void |
FeatureModel.declareSpotFeatures(Collection<String> features,
Map<String,String> featureNames,
Map<String,String> featureShortNames,
Map<String,Dimension> featureDimensions,
Map<String,Boolean> isIntFeature)
Declares spot features, by specifying their names, short name and
dimension.
|
void |
FeatureModel.declareTrackFeatures(Collection<String> features,
Map<String,String> featureNames,
Map<String,String> featureShortNames,
Map<String,Dimension> featureDimensions,
Map<String,Boolean> isIntFeature)
Declares track features, by specifying their names, short name and
dimension.
|
| Modifier and Type | Method and Description |
|---|---|
Map<String,Dimension> |
FeatureAnalyzer.getFeatureDimensions()
Returns the map of feature dimension this analyzer can compute.
|
| Constructor and Description |
|---|
AbstractFeatureGrapher(String xFeature,
List<String> yFeatures,
Dimension xDimension,
Map<String,Dimension> yDimensions,
Map<String,String> featureNames,
String spaceUnits,
String timeUnits) |
| Constructor and Description |
|---|
AbstractFeatureGrapher(String xFeature,
List<String> yFeatures,
Dimension xDimension,
Map<String,Dimension> yDimensions,
Map<String,String> featureNames,
String spaceUnits,
String timeUnits) |
| Modifier and Type | Field and Description |
|---|---|
static Map<String,Dimension> |
EdgeTimeLocationAnalyzer.FEATURE_DIMENSIONS |
static Map<String,Dimension> |
EdgeTargetAnalyzer.FEATURE_DIMENSIONS |
static Map<String,Dimension> |
EdgeSpeedAnalyzer.FEATURE_DIMENSIONS |
static Map<String,Dimension> |
DirectionalChangeAnalyzer.FEATURE_DIMENSIONS |
| Modifier and Type | Method and Description |
|---|---|
Map<String,Dimension> |
AbstractEdgeAnalyzer.getFeatureDimensions() |
| Constructor and Description |
|---|
AbstractEdgeAnalyzer(String key,
String name,
List<String> features,
Map<String,String> featureNames,
Map<String,String> featureShortNames,
Map<String,Dimension> featureDimensions,
Map<String,Boolean> isInts) |
| Modifier and Type | Method and Description |
|---|---|
Map<String,Dimension> |
ManualSpotColorAnalyzerFactory.getFeatureDimensions() |
Map<String,Dimension> |
ManualEdgeColorAnalyzer.getFeatureDimensions() |
| Modifier and Type | Method and Description |
|---|---|
Map<String,Dimension> |
SpotShapeAnalyzerFactory.getFeatureDimensions() |
Map<String,Dimension> |
SpotIntensityMultiCAnalyzerFactory.getFeatureDimensions() |
Map<String,Dimension> |
SpotFitEllipseAnalyzerFactory.getFeatureDimensions() |
Map<String,Dimension> |
SpotContrastAndSNRAnalyzerFactory.getFeatureDimensions() |
| Modifier and Type | Field and Description |
|---|---|
static Map<String,Dimension> |
TrackSpotQualityFeatureAnalyzer.FEATURE_DIMENSIONS |
static Map<String,Dimension> |
TrackSpeedStatisticsAnalyzer.FEATURE_DIMENSIONS |
static Map<String,Dimension> |
TrackMotilityAnalyzer.FEATURE_DIMENSIONS |
static Map<String,Dimension> |
TrackLocationAnalyzer.FEATURE_DIMENSIONS |
static Map<String,Dimension> |
TrackIndexAnalyzer.FEATURE_DIMENSIONS |
static Map<String,Dimension> |
TrackDurationAnalyzer.FEATURE_DIMENSIONS |
static Map<String,Dimension> |
TrackBranchingAnalyzer.FEATURE_DIMENSIONS |
| Modifier and Type | Method and Description |
|---|---|
Map<String,Dimension> |
TrackMotilityAnalyzer.getFeatureDimensions() |
Map<String,Dimension> |
TrackIndexAnalyzer.getFeatureDimensions() |
Map<String,Dimension> |
AbstractTrackAnalyzer.getFeatureDimensions() |
| Constructor and Description |
|---|
AbstractTrackAnalyzer(String key,
String name,
List<String> features,
Map<String,String> featureNames,
Map<String,String> featureShortNames,
Map<String,Dimension> featureDimensions,
Map<String,Boolean> isInts) |
| Modifier and Type | Method and Description |
|---|---|
static String |
TMUtils.getUnitsFor(Dimension dimension,
String spaceUnits,
String timeUnits)
Return a String unit for the given dimension.
|
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