| Package | Description |
|---|---|
| bunwarpj |
Provides the main and utility classes to run the ImageJ/Fiji plugin
bUnwarpJ_: consistent and elastic image registration. |
| Modifier and Type | Method and Description |
|---|---|
Mask |
MainDialog.getSourceMask()
Get source Mask.
|
Mask |
MainDialog.getSourceMsk()
Get source mask.
|
Mask |
MainDialog.getTargetMask()
Get target Mask.
|
Mask |
MainDialog.getTargetMsk()
Get target mask.
|
| Modifier and Type | Method and Description |
|---|---|
static double |
MiscTools.imageSimilarity(ij.ImagePlus targetImp,
ij.ImagePlus sourceImp,
Mask targetMsk,
boolean verbose)
Calculate image similarity between two images (target and source)
|
void |
FinalAction.setup(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel source,
BSplineModel target,
PointHandler sourcePh,
PointHandler targetPh,
Mask sourceMsk,
Mask targetMsk,
double[][] sourceAffineMatrix,
double[][] targetAffineMatrix,
int min_scale_deformation,
int max_scale_deformation,
int min_scale_image,
double divWeight,
double curlWeight,
double landmarkWeight,
double imageWeight,
double consistencyWeight,
double stopThreshold,
int outputLevel,
boolean showMarquardtOptim,
int accurate_mode)
Pass parameter from
MainDialog to
FinalAction. |
| Constructor and Description |
|---|
PointHandler(ij.ImagePlus imp,
PointToolbar tb,
Mask mask,
MainDialog dialog)
Constructor with graphical capabilities, create an instance of PointHandler.
|
Transformation(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel source,
BSplineModel target,
PointHandler sourcePh,
PointHandler targetPh,
Mask sourceMsk,
Mask targetMsk,
double[][] sourceAffineMatrix,
double[][] targetAffineMatrix,
int min_scale_deformation,
int max_scale_deformation,
int min_scale_image,
double divWeight,
double curlWeight,
double landmarkWeight,
double imageWeight,
double consistencyWeight,
double stopThreshold,
int outputLevel,
boolean showMarquardtOptim,
int accurate_mode,
String fn_tnf_1,
String fn_tnf_2,
ij.ImagePlus output_ip_1,
ij.ImagePlus output_ip_2,
MainDialog dialog)
Create an instance of Transformation.
|
Transformation(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel source,
BSplineModel target,
PointHandler sourcePh,
PointHandler targetPh,
Mask sourceMsk,
Mask targetMsk,
double[][] sourceAffineMatrix,
double[][] targetAffineMatrix,
int min_scale_deformation,
int max_scale_deformation,
int min_scale_image,
double divWeight,
double curlWeight,
double landmarkWeight,
double imageWeight,
double consistencyWeight,
double stopThreshold,
int outputLevel,
boolean showMarquardtOptim,
int accurate_mode,
String fn_tnf_1,
String fn_tnf_2,
ij.ImagePlus output_ip_1,
ij.ImagePlus output_ip_2,
MainDialog dialog,
ij.process.ImageProcessor originalSourceIP,
ij.process.ImageProcessor originalTargetIP)
Create an instance of Transformation.
|
Copyright © 2015–2021 Fiji. All rights reserved.